Wall clock time and date at job start Mon Mar 30 2020 02:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47128 * 2 1 4 4 H 1.09007 * 109.47427 * 54.99507 * 3 2 1 5 5 C 1.50701 * 109.47419 * 174.99846 * 3 2 1 6 6 H 1.08002 * 119.99761 * 119.99343 * 5 3 2 7 7 C 1.37871 * 119.99694 * 300.27906 * 5 3 2 8 8 N 1.31523 * 119.99908 * 179.72112 * 7 5 3 9 9 Si 1.86800 * 120.00405 * 359.71709 * 7 5 3 10 10 H 1.48500 * 109.47210 * 90.00069 * 9 7 5 11 11 H 1.48504 * 109.47424 * 210.00300 * 9 7 5 12 12 H 1.48502 * 109.46888 * 330.00390 * 9 7 5 13 13 N 1.46904 * 109.47027 * 295.00059 * 3 2 1 14 14 C 1.46845 * 110.99832 * 299.21033 * 13 3 2 15 15 C 1.53036 * 109.52162 * 174.16110 * 14 13 3 16 16 H 1.08995 * 109.50739 * 299.23389 * 15 14 13 17 17 C 1.53009 * 109.50052 * 179.11814 * 15 14 13 18 18 C 1.53118 * 109.27860 * 59.18118 * 15 14 13 19 19 C 1.53118 * 109.15953 * 302.34119 * 18 15 14 20 20 H 1.09003 * 109.50021 * 177.59333 * 19 18 15 21 21 C 1.53001 * 109.53653 * 297.69767 * 19 18 15 22 22 C 1.46847 * 110.99797 * 175.00148 * 13 3 2 23 23 H 1.09000 * 109.47556 * 180.02562 * 1 2 3 24 24 H 1.09008 * 109.47356 * 300.00124 * 1 2 3 25 25 H 1.09002 * 109.47262 * 59.99916 * 1 2 3 26 26 H 1.08995 * 109.47276 * 239.99767 * 2 1 3 27 27 H 1.09008 * 109.46821 * 119.99529 * 2 1 3 28 28 H 0.96995 * 120.00181 * 179.97438 * 8 7 5 29 29 H 1.09009 * 109.46335 * 294.17651 * 14 13 3 30 30 H 1.09000 * 109.46154 * 54.14260 * 14 13 3 31 31 H 1.08993 * 109.47030 * 300.19597 * 17 15 14 32 32 H 1.08996 * 109.46789 * 60.19978 * 17 15 14 33 33 H 1.09000 * 109.46672 * 180.19564 * 17 15 14 34 34 H 1.09008 * 109.52322 * 182.43726 * 18 15 14 35 35 H 1.09003 * 109.52576 * 62.24940 * 18 15 14 36 36 H 1.08999 * 109.46522 * 179.82468 * 21 19 18 37 37 H 1.08998 * 109.46479 * 299.81991 * 21 19 18 38 38 H 1.08993 * 109.47084 * 59.82089 * 21 19 18 39 39 H 1.09001 * 109.46280 * 305.85058 * 22 13 3 40 40 H 1.08999 * 109.46528 * 65.82128 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1471 1.8889 -0.6523 7 6 4.1434 0.8734 1.2252 8 7 5.4544 0.8701 1.3307 9 14 3.0965 0.1045 2.5677 10 1 2.8695 -1.3300 2.2579 11 1 3.7971 0.2245 3.8716 12 1 1.7906 0.8077 2.6408 13 7 1.6513 2.0993 -1.2553 14 6 2.2354 1.4097 -2.4127 15 6 1.6947 2.0292 -3.7034 16 1 0.6113 1.9144 -3.7361 17 6 2.3204 1.3249 -4.9091 18 6 2.0525 3.5175 -3.7384 19 6 1.4734 4.2029 -2.4977 20 1 1.7611 5.2543 -2.4951 21 6 -0.0523 4.0907 -2.5163 22 6 2.0206 3.5205 -1.2418 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 5.8776 0.4688 2.1058 29 1 3.3204 1.5125 -2.3872 30 1 1.9700 0.3531 -2.3779 31 1 3.4038 1.4388 -4.8745 32 1 2.0654 0.2655 -4.8837 33 1 1.9375 1.7688 -5.8281 34 1 1.6320 3.9723 -4.6354 35 1 3.1365 3.6316 -3.7451 36 1 -0.4631 4.5762 -1.6311 37 1 -0.4414 4.5769 -3.4109 38 1 -0.3393 3.0392 -2.5203 39 1 1.5991 3.9969 -0.3567 40 1 3.1065 3.6134 -1.2218 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221888528.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:19 Heat of formation + Delta-G solvation = -15.321778 kcal Electronic energy + Delta-G solvation = -17159.329831 eV Core-core repulsion = 14780.240795 eV Total energy + Delta-G solvation = -2379.089036 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.06567 -35.47703 -32.71086 -32.07798 -31.16768 -27.14495 -26.30717 -26.05790 -23.57132 -22.26468 -20.85632 -19.38299 -18.24789 -16.57799 -15.65554 -14.60931 -14.37698 -14.02142 -13.67263 -13.47251 -13.34245 -12.79837 -12.46055 -12.17606 -12.03317 -11.76987 -11.60864 -11.39406 -11.15633 -11.05307 -10.88802 -10.61368 -10.46672 -10.19844 -9.97393 -9.86149 -9.62873 -9.50541 -9.30780 -9.14943 -8.54337 -7.05624 -6.09911 -4.09943 3.26649 3.37785 3.40166 4.39007 4.90217 5.17183 5.19866 5.27644 5.41268 5.57575 5.74282 5.85040 5.99283 6.02318 6.04836 6.08600 6.13612 6.19537 6.22721 6.26026 6.30210 6.38673 6.52667 6.56555 6.57208 6.69995 6.75441 6.77696 6.84504 6.87496 6.96741 7.02669 7.15034 7.29951 7.61136 8.17886 8.25392 8.48335 8.93128 9.54164 11.03019 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.029415 B = 0.009663 C = 0.009258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.673437 B = 2896.989256 C = 3023.739990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.123 4.123 3 C 0.181 3.819 4 H 0.037 0.963 5 C -0.542 4.542 6 H 0.075 0.925 7 C 0.073 3.927 8 N -0.900 5.900 9 Si 0.887 3.113 10 H -0.279 1.279 11 H -0.299 1.299 12 H -0.264 1.264 13 N -0.523 5.523 14 C 0.065 3.935 15 C -0.092 4.092 16 H 0.072 0.928 17 C -0.144 4.144 18 C -0.106 4.106 19 C -0.090 4.090 20 H 0.060 0.940 21 C -0.135 4.135 22 C 0.068 3.932 23 H 0.032 0.968 24 H 0.041 0.959 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.046 0.954 28 H 0.263 0.737 29 H 0.041 0.959 30 H 0.067 0.933 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.047 0.953 34 H 0.051 0.949 35 H 0.056 0.944 36 H 0.045 0.955 37 H 0.036 0.964 38 H 0.070 0.930 39 H 0.061 0.939 40 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.032 2.662 -8.031 12.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.160 4.160 3 C 0.073 3.927 4 H 0.055 0.945 5 C -0.580 4.580 6 H 0.093 0.907 7 C -0.130 4.130 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.206 1.206 11 H -0.227 1.227 12 H -0.189 1.189 13 N -0.246 5.246 14 C -0.064 4.064 15 C -0.111 4.111 16 H 0.090 0.910 17 C -0.202 4.202 18 C -0.144 4.144 19 C -0.109 4.109 20 H 0.079 0.921 21 C -0.192 4.192 22 C -0.061 4.061 23 H 0.051 0.949 24 H 0.060 0.940 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.059 0.941 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.056 0.944 38 H 0.089 0.911 39 H 0.080 0.920 40 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -9.393 2.587 -7.950 12.575 hybrid contribution 0.643 -0.477 0.950 1.242 sum -8.750 2.110 -7.001 11.403 Atomic orbital electron populations 1.21731 0.97401 0.99256 1.01637 1.21958 0.94028 0.99459 1.00592 1.19697 0.94412 0.90416 0.88168 0.94500 1.21643 0.90734 1.38552 1.07089 0.90663 1.24992 0.94707 0.95402 0.97875 1.69922 1.08823 1.45169 1.29830 0.86851 0.80710 0.79798 0.80845 1.20613 1.22696 1.18884 1.62266 1.57902 1.01339 1.03087 1.21992 0.97694 0.97720 0.88975 1.21242 1.00422 0.94553 0.94838 0.90985 1.21784 1.00851 1.00154 0.97413 1.21620 1.00206 0.95523 0.97058 1.21196 0.96057 0.98203 0.95464 0.92126 1.21720 0.95080 1.02735 0.99648 1.21872 0.98602 0.89649 0.95948 0.94900 0.93995 0.91942 0.92216 0.93629 0.92742 0.94056 0.91470 0.92916 0.92936 0.93347 0.92985 0.92538 0.93570 0.94448 0.91127 0.92048 0.94157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 9.80 37.16 0.36 -2.24 16 2 C -0.12 -2.66 4.72 -26.73 -0.13 -2.78 16 3 C 0.18 4.19 1.34 -68.86 -0.09 4.10 16 4 H 0.04 0.91 7.15 -51.93 -0.37 0.54 16 5 C -0.54 -14.77 7.77 -34.44 -0.27 -15.04 16 6 H 0.08 2.25 6.08 -52.49 -0.32 1.93 16 7 C 0.07 2.07 5.45 -17.82 -0.10 1.97 16 8 N -0.90 -27.36 13.96 55.43 0.77 -26.59 16 9 Si 0.89 22.02 24.41 -169.99 -4.15 17.87 16 10 H -0.28 -6.78 6.82 56.52 0.39 -6.40 16 11 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 12 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 13 N -0.52 -10.41 3.38 -228.07 -0.77 -11.18 16 14 C 0.06 1.22 4.09 -3.84 -0.02 1.21 16 15 C -0.09 -1.40 2.53 -90.54 -0.23 -1.63 16 16 H 0.07 1.08 6.58 -51.93 -0.34 0.74 16 17 C -0.14 -1.93 9.20 37.16 0.34 -1.59 16 18 C -0.11 -1.57 4.79 -26.61 -0.13 -1.70 16 19 C -0.09 -1.39 3.21 -90.54 -0.29 -1.68 16 20 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 21 C -0.13 -1.89 8.76 37.16 0.33 -1.57 16 22 C 0.07 1.29 4.56 -3.83 -0.02 1.28 16 23 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.04 0.76 8.14 -51.92 -0.42 0.33 16 25 H 0.06 1.09 7.75 -51.93 -0.40 0.69 16 26 H 0.06 1.28 6.05 -51.93 -0.31 0.96 16 27 H 0.05 1.06 3.19 -51.92 -0.17 0.89 16 28 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.04 0.90 6.63 -51.92 -0.34 0.56 16 30 H 0.07 1.29 5.93 -51.93 -0.31 0.98 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.05 0.68 8.14 -51.92 -0.42 0.25 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 1.07 6.01 -51.93 -0.31 0.76 16 39 H 0.06 1.18 8.08 -51.93 -0.42 0.76 16 40 H 0.04 0.87 6.96 -51.93 -0.36 0.51 16 LS Contribution 288.56 15.07 4.35 4.35 Total: -1.00 -28.45 288.56 -7.10 -35.56 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -7.07 Total: -0.32 kcal Atomic # 6 Polarization: -19.44 SS G_CDS: -0.23 Total: -19.68 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: 0.00 Total: -37.77 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.15 Total: 17.87 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -28.45 -7.10 -35.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221888528.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.234 kcal (2) G-P(sol) polarization free energy of solvation -28.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds