Wall clock time and date at job start Mon Mar 30 2020 02:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47128 * 2 1 4 4 H 1.09007 * 109.47427 * 54.99507 * 3 2 1 5 5 C 1.50701 * 109.47419 * 174.99846 * 3 2 1 6 6 H 1.08002 * 119.99761 * 119.99343 * 5 3 2 7 7 C 1.37871 * 119.99694 * 300.27906 * 5 3 2 8 8 N 1.31523 * 119.99908 * 179.72112 * 7 5 3 9 9 Si 1.86800 * 120.00405 * 359.71709 * 7 5 3 10 10 H 1.48500 * 109.47210 * 90.00069 * 9 7 5 11 11 H 1.48504 * 109.47424 * 210.00300 * 9 7 5 12 12 H 1.48502 * 109.46888 * 330.00390 * 9 7 5 13 13 N 1.46904 * 109.47027 * 295.00059 * 3 2 1 14 14 C 1.46845 * 110.99832 * 299.21033 * 13 3 2 15 15 C 1.53036 * 109.52162 * 174.16110 * 14 13 3 16 16 H 1.08995 * 109.50739 * 299.23389 * 15 14 13 17 17 C 1.53009 * 109.50052 * 179.11814 * 15 14 13 18 18 C 1.53118 * 109.27860 * 59.18118 * 15 14 13 19 19 C 1.53118 * 109.15953 * 302.34119 * 18 15 14 20 20 H 1.09003 * 109.50021 * 177.59333 * 19 18 15 21 21 C 1.53001 * 109.53653 * 297.69767 * 19 18 15 22 22 C 1.46847 * 110.99797 * 175.00148 * 13 3 2 23 23 H 1.09000 * 109.47556 * 180.02562 * 1 2 3 24 24 H 1.09008 * 109.47356 * 300.00124 * 1 2 3 25 25 H 1.09002 * 109.47262 * 59.99916 * 1 2 3 26 26 H 1.08995 * 109.47276 * 239.99767 * 2 1 3 27 27 H 1.09008 * 109.46821 * 119.99529 * 2 1 3 28 28 H 0.96995 * 120.00181 * 179.97438 * 8 7 5 29 29 H 1.09009 * 109.46335 * 294.17651 * 14 13 3 30 30 H 1.09000 * 109.46154 * 54.14260 * 14 13 3 31 31 H 1.08993 * 109.47030 * 300.19597 * 17 15 14 32 32 H 1.08996 * 109.46789 * 60.19978 * 17 15 14 33 33 H 1.09000 * 109.46672 * 180.19564 * 17 15 14 34 34 H 1.09008 * 109.52322 * 182.43726 * 18 15 14 35 35 H 1.09003 * 109.52576 * 62.24940 * 18 15 14 36 36 H 1.08999 * 109.46522 * 179.82468 * 21 19 18 37 37 H 1.08998 * 109.46479 * 299.81991 * 21 19 18 38 38 H 1.08993 * 109.47084 * 59.82089 * 21 19 18 39 39 H 1.09001 * 109.46280 * 305.85058 * 22 13 3 40 40 H 1.08999 * 109.46528 * 65.82128 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1471 1.8889 -0.6523 7 6 4.1434 0.8734 1.2252 8 7 5.4544 0.8701 1.3307 9 14 3.0965 0.1045 2.5677 10 1 2.8695 -1.3300 2.2579 11 1 3.7971 0.2245 3.8716 12 1 1.7906 0.8077 2.6408 13 7 1.6513 2.0993 -1.2553 14 6 2.2354 1.4097 -2.4127 15 6 1.6947 2.0292 -3.7034 16 1 0.6113 1.9144 -3.7361 17 6 2.3204 1.3249 -4.9091 18 6 2.0525 3.5175 -3.7384 19 6 1.4734 4.2029 -2.4977 20 1 1.7611 5.2543 -2.4951 21 6 -0.0523 4.0907 -2.5163 22 6 2.0206 3.5205 -1.2418 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 5.8776 0.4688 2.1058 29 1 3.3204 1.5125 -2.3872 30 1 1.9700 0.3531 -2.3779 31 1 3.4038 1.4388 -4.8745 32 1 2.0654 0.2655 -4.8837 33 1 1.9375 1.7688 -5.8281 34 1 1.6320 3.9723 -4.6354 35 1 3.1365 3.6316 -3.7451 36 1 -0.4631 4.5762 -1.6311 37 1 -0.4414 4.5769 -3.4109 38 1 -0.3393 3.0392 -2.5203 39 1 1.5991 3.9969 -0.3567 40 1 3.1065 3.6134 -1.2218 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221888528.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:18 Heat of formation + Delta-G solvation = -32.721610 kcal Electronic energy + Delta-G solvation = -17160.084344 eV Core-core repulsion = 14780.240795 eV Total energy + Delta-G solvation = -2379.843549 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.57537 -37.11165 -34.21461 -33.99908 -32.70609 -29.04107 -27.53645 -27.36554 -25.36023 -23.89259 -22.19582 -21.18613 -19.76732 -18.51178 -17.41278 -16.31967 -15.83168 -15.44563 -15.32272 -15.04421 -14.75283 -14.58546 -13.97931 -13.64014 -13.54125 -13.36799 -13.06808 -12.80345 -12.60994 -12.51707 -12.37089 -12.24102 -12.02894 -11.69104 -11.55965 -11.45767 -11.28283 -11.17690 -10.91586 -10.80524 -10.62671 -8.84471 -8.32962 -6.36631 1.27610 1.33107 1.43860 2.28981 3.02503 3.31406 3.89901 3.98157 4.11928 4.28474 4.35993 4.44213 4.49632 4.62986 4.64029 4.77676 4.81581 4.86970 4.91775 4.94622 5.01616 5.06896 5.11893 5.15984 5.21742 5.26275 5.29018 5.31325 5.38342 5.45681 5.49318 5.52562 5.58433 5.65893 5.76779 6.17456 6.43357 6.57223 6.72936 7.31695 8.83776 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.029415 B = 0.009663 C = 0.009258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.673437 B = 2896.989256 C = 3023.739990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.123 4.123 3 C 0.183 3.817 4 H 0.028 0.972 5 C -0.535 4.535 6 H 0.031 0.969 7 C 0.013 3.987 8 N -0.950 5.950 9 Si 0.949 3.051 10 H -0.267 1.267 11 H -0.302 1.302 12 H -0.245 1.245 13 N -0.507 5.507 14 C 0.068 3.932 15 C -0.084 4.084 16 H 0.088 0.912 17 C -0.141 4.141 18 C -0.105 4.105 19 C -0.085 4.085 20 H 0.074 0.926 21 C -0.127 4.127 22 C 0.067 3.933 23 H 0.057 0.943 24 H 0.044 0.956 25 H 0.070 0.930 26 H 0.056 0.944 27 H 0.032 0.968 28 H 0.264 0.736 29 H -0.002 1.002 30 H 0.064 0.936 31 H 0.038 0.962 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.037 0.963 36 H 0.046 0.954 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.057 0.943 40 H -0.001 1.001 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.226 2.582 -9.071 15.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.160 4.160 3 C 0.074 3.926 4 H 0.046 0.954 5 C -0.574 4.574 6 H 0.049 0.951 7 C -0.184 4.184 8 N -0.590 5.590 9 Si 0.777 3.223 10 H -0.193 1.193 11 H -0.230 1.230 12 H -0.169 1.169 13 N -0.230 5.230 14 C -0.060 4.060 15 C -0.103 4.103 16 H 0.106 0.894 17 C -0.199 4.199 18 C -0.143 4.143 19 C -0.104 4.104 20 H 0.092 0.908 21 C -0.184 4.184 22 C -0.062 4.062 23 H 0.076 0.924 24 H 0.063 0.937 25 H 0.089 0.911 26 H 0.075 0.925 27 H 0.051 0.949 28 H 0.073 0.927 29 H 0.016 0.984 30 H 0.083 0.917 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.103 0.897 35 H 0.056 0.944 36 H 0.066 0.934 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.017 0.983 Dipole moment (debyes) X Y Z Total from point charges -12.610 2.514 -9.013 15.703 hybrid contribution 1.724 -0.385 1.206 2.139 sum -10.887 2.129 -7.807 13.565 Atomic orbital electron populations 1.21639 0.94074 1.01118 1.02220 1.21875 0.96927 0.97408 0.99823 1.19604 0.91261 0.92121 0.89601 0.95401 1.21901 0.93025 1.36939 1.05552 0.95075 1.25853 0.95766 0.96273 1.00534 1.70078 1.10889 1.47141 1.30930 0.85836 0.79564 0.79560 0.77362 1.19298 1.22973 1.16919 1.62336 1.56929 1.01612 1.02122 1.22016 0.95208 0.98052 0.90736 1.21210 1.01127 0.94794 0.93145 0.89395 1.21761 0.99956 1.00543 0.97594 1.21632 0.99295 0.95288 0.98050 1.21184 0.97403 0.98440 0.93385 0.90754 1.21651 0.93218 1.02501 1.01079 1.21935 0.96268 0.89621 0.98355 0.92424 0.93712 0.91052 0.92519 0.94941 0.92742 0.98369 0.91718 0.94283 0.92435 0.90601 0.89740 0.94381 0.93449 0.91791 0.91984 0.92449 0.98271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.42 9.80 71.98 0.71 -3.72 16 2 C -0.12 -5.15 4.72 30.59 0.14 -5.01 16 3 C 0.18 8.52 1.34 44.17 0.06 8.58 16 4 H 0.03 1.37 7.15 -2.38 -0.02 1.35 16 5 C -0.54 -30.59 7.77 25.60 0.20 -30.39 16 6 H 0.03 2.01 6.08 -2.91 -0.02 1.99 16 7 C 0.01 0.77 5.45 84.65 0.46 1.24 16 8 N -0.95 -60.40 13.96 21.45 0.30 -60.10 16 9 Si 0.95 45.83 24.41 68.60 1.67 47.51 16 10 H -0.27 -12.28 6.82 99.48 0.68 -11.61 16 11 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 12 H -0.25 -11.00 6.54 99.48 0.65 -10.35 16 13 N -0.51 -20.23 3.38 -875.48 -2.96 -23.19 16 14 C 0.07 2.61 4.09 86.33 0.35 2.97 16 15 C -0.08 -2.41 2.53 -10.74 -0.03 -2.44 16 16 H 0.09 2.32 6.58 -2.39 -0.02 2.31 16 17 C -0.14 -3.48 9.20 71.99 0.66 -2.82 16 18 C -0.11 -2.90 4.79 30.67 0.15 -2.75 16 19 C -0.09 -2.48 3.21 -10.74 -0.03 -2.51 16 20 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 21 C -0.13 -3.13 8.76 71.98 0.63 -2.50 16 22 C 0.07 2.59 4.56 86.33 0.39 2.99 16 23 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 24 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 25 H 0.07 2.24 7.75 -2.39 -0.02 2.22 16 26 H 0.06 2.38 6.05 -2.39 -0.01 2.37 16 27 H 0.03 1.45 3.19 -2.38 -0.01 1.44 16 28 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 29 H 0.00 -0.10 6.63 -2.38 -0.02 -0.11 16 30 H 0.06 2.48 5.93 -2.39 -0.01 2.47 16 31 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 35 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.06 1.65 6.01 -2.39 -0.01 1.63 16 39 H 0.06 2.23 8.08 -2.39 -0.02 2.21 16 40 H 0.00 -0.05 6.96 -2.39 -0.02 -0.07 16 Total: -1.00 -64.55 288.56 3.61 -60.94 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: 0.90 Total: 11.20 kcal Atomic # 6 Polarization: -40.05 SS G_CDS: 3.69 Total: -36.36 kcal Atomic # 7 Polarization: -80.63 SS G_CDS: -2.66 Total: -83.29 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 1.67 Total: 47.51 kcal Total: -64.55 3.61 -60.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221888528.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.221 kcal (2) G-P(sol) polarization free energy of solvation -64.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds