Wall clock time and date at job start Mon Mar 30 2020 03:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47294 * 2 1 4 4 N 1.46497 * 109.47131 * 180.02562 * 3 2 1 5 5 C 1.36942 * 119.99978 * 270.00120 * 4 3 2 6 6 H 1.08000 * 119.99765 * 141.86642 * 5 4 3 7 7 C 1.38811 * 119.99471 * 321.86408 * 5 4 3 8 8 N 1.31617 * 120.00283 * 339.18072 * 7 5 4 9 9 Si 1.86804 * 119.99583 * 159.18589 * 7 5 4 10 10 H 1.48500 * 109.47145 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.46964 * 119.99779 * 9 7 5 12 12 H 1.48501 * 109.46872 * 239.99842 * 9 7 5 13 13 C 1.46499 * 120.00050 * 89.99396 * 4 3 2 14 14 H 1.09000 * 109.47368 * 5.07953 * 13 4 3 15 15 C 1.53008 * 109.46888 * 125.07203 * 13 4 3 16 16 C 1.53003 * 109.47084 * 179.97438 * 15 13 4 17 17 C 1.52999 * 109.47058 * 300.00464 * 16 15 13 18 18 C 1.52997 * 109.47371 * 60.00057 * 17 16 15 19 19 H 1.08997 * 109.47507 * 59.99889 * 18 17 16 20 20 C 1.53003 * 109.46862 * 179.97438 * 18 17 16 21 21 C 1.53001 * 109.47019 * 299.99432 * 18 17 16 22 22 H 1.08997 * 109.47022 * 60.00106 * 1 2 3 23 23 H 1.08994 * 109.47457 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46998 * 300.00407 * 1 2 3 25 25 H 1.08993 * 109.46703 * 239.99668 * 2 1 3 26 26 H 1.09007 * 109.46961 * 119.99887 * 2 1 3 27 27 H 1.09001 * 109.47431 * 59.99858 * 3 2 1 28 28 H 1.08997 * 109.47000 * 299.99908 * 3 2 1 29 29 H 0.97002 * 119.99908 * 180.02562 * 8 7 5 30 30 H 1.08998 * 109.46822 * 300.00178 * 15 13 4 31 31 H 1.09000 * 109.46504 * 60.00220 * 15 13 4 32 32 H 1.08999 * 109.46442 * 60.00225 * 16 15 13 33 33 H 1.08998 * 109.46809 * 180.02562 * 16 15 13 34 34 H 1.08997 * 109.46895 * 299.99571 * 17 16 15 35 35 H 1.09001 * 109.46771 * 180.02562 * 17 16 15 36 36 H 1.09000 * 109.46448 * 179.97438 * 20 18 17 37 37 H 1.08991 * 109.47459 * 60.00011 * 20 18 17 38 38 H 1.09001 * 109.47272 * 299.99509 * 20 18 17 39 39 H 1.09000 * 109.47242 * 179.97438 * 21 18 17 40 40 H 1.08997 * 109.47354 * 300.00551 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1902 1.4422 1.1850 6 1 5.0974 0.8646 1.2843 7 6 3.7188 2.1844 2.2591 8 7 2.8875 3.1840 2.0541 9 14 4.2644 1.7646 3.9957 10 1 5.1936 0.6069 3.9563 11 1 4.9558 2.9348 4.5938 12 1 3.0769 1.4180 4.8174 13 6 4.2370 1.4425 -1.2696 14 1 3.5319 1.5335 -2.0958 15 6 5.2099 2.6231 -1.2972 16 6 5.9748 2.6228 -2.6223 17 6 6.7562 1.3146 -2.7597 18 6 5.7834 0.1341 -2.7323 19 1 5.0785 0.2248 -3.5587 20 6 6.5649 -1.1740 -2.8704 21 6 5.0185 0.1343 -1.4071 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 1.8934 -0.5139 0.8901 27 1 1.6767 1.9564 0.8900 28 1 1.6768 1.9563 -0.8900 29 1 2.5583 3.7029 2.8046 30 1 4.6531 3.5550 -1.1988 31 1 5.9150 2.5321 -0.4710 32 1 5.2699 2.7135 -3.4486 33 1 6.6682 3.4636 -2.6416 34 1 7.4611 1.2239 -1.9333 35 1 7.3015 1.3147 -3.7035 36 1 5.8718 -2.0150 -2.8503 37 1 7.2700 -1.2650 -2.0443 38 1 7.1095 -1.1740 -3.8146 39 1 4.3251 -0.7065 -1.3877 40 1 5.7234 0.0436 -0.5807 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000223982577.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:35 Heat of formation + Delta-G solvation = -20.762667 kcal Electronic energy + Delta-G solvation = -16767.424853 eV Core-core repulsion = 14388.099883 eV Total energy + Delta-G solvation = -2379.324970 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.35695 -35.46136 -32.49730 -31.83196 -30.94130 -28.19180 -25.81983 -25.44899 -23.23323 -21.23698 -20.58895 -19.61265 -19.09079 -16.25400 -15.06931 -14.44984 -14.10122 -13.90211 -13.81795 -13.54607 -13.15619 -12.81553 -12.54465 -11.88336 -11.84603 -11.45997 -11.28346 -11.19267 -10.90371 -10.84443 -10.75056 -10.49373 -10.35286 -10.27594 -10.09608 -9.96830 -9.73904 -9.43415 -9.32728 -9.13604 -8.37171 -6.42502 -5.68189 -3.26665 3.38680 3.47693 3.50174 4.53795 5.14894 5.20513 5.34970 5.42808 5.59589 5.71847 5.83726 5.90596 5.96150 6.02194 6.08102 6.13573 6.17934 6.26613 6.33764 6.34043 6.39891 6.51134 6.56839 6.60354 6.67109 6.72324 6.81098 6.92368 6.98003 7.02671 7.06502 7.32256 7.38702 7.43924 7.82911 7.93010 8.63580 9.30913 9.93902 10.53097 11.30668 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.021007 B = 0.010018 C = 0.008304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.554139 B = 2794.350961 C = 3370.945717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.140 4.140 3 C 0.148 3.852 4 N -0.582 5.582 5 C -0.246 4.246 6 H 0.058 0.942 7 C 0.011 3.989 8 N -0.888 5.888 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.291 1.291 12 H -0.289 1.289 13 C 0.177 3.823 14 H 0.042 0.958 15 C -0.117 4.117 16 C -0.118 4.118 17 C -0.109 4.109 18 C -0.091 4.091 19 H 0.060 0.940 20 C -0.144 4.144 21 C -0.119 4.119 22 H 0.044 0.956 23 H 0.038 0.962 24 H 0.049 0.951 25 H 0.039 0.961 26 H 0.055 0.945 27 H 0.092 0.908 28 H 0.018 0.982 29 H 0.251 0.749 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.050 0.950 34 H 0.058 0.942 35 H 0.048 0.952 36 H 0.049 0.951 37 H 0.051 0.949 38 H 0.045 0.955 39 H 0.050 0.950 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.579 -4.607 -8.159 9.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.180 4.180 3 C 0.022 3.978 4 N -0.301 5.301 5 C -0.376 4.376 6 H 0.075 0.925 7 C -0.189 4.189 8 N -0.531 5.531 9 Si 0.720 3.280 10 H -0.202 1.202 11 H -0.218 1.218 12 H -0.216 1.216 13 C 0.070 3.930 14 H 0.060 0.940 15 C -0.156 4.156 16 C -0.156 4.156 17 C -0.147 4.147 18 C -0.110 4.110 19 H 0.079 0.921 20 C -0.201 4.201 21 C -0.158 4.158 22 H 0.063 0.937 23 H 0.057 0.943 24 H 0.068 0.932 25 H 0.058 0.942 26 H 0.074 0.926 27 H 0.109 0.891 28 H 0.037 0.963 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.497 -4.473 -8.030 9.525 hybrid contribution 0.226 -0.198 1.003 1.047 sum 2.723 -4.671 -7.027 8.866 Atomic orbital electron populations 1.21704 0.97768 0.99809 1.01003 1.22132 0.93442 1.01909 1.00510 1.20944 0.83727 0.92006 1.01140 1.43893 1.00556 1.85175 1.00519 1.18926 1.08429 1.21700 0.88582 0.92453 1.25154 0.99902 0.94997 0.98852 1.70007 1.35583 1.17764 1.29738 0.86431 0.78057 0.77918 0.85621 1.20183 1.21816 1.21606 1.20356 0.92097 0.91729 0.88818 0.93972 1.21836 0.98757 0.99712 0.95265 1.21573 0.98615 0.96430 0.99002 1.21547 0.97713 0.94930 1.00466 1.21143 0.96949 0.94008 0.98935 0.92104 1.21817 0.99952 0.97583 1.00751 1.22040 0.98912 0.99608 0.95245 0.93721 0.94287 0.93155 0.94199 0.92601 0.89055 0.96332 0.93850 0.92593 0.91693 0.93015 0.93144 0.92307 0.93304 0.93145 0.92974 0.93553 0.93143 0.92108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.91 37.16 0.37 -2.12 16 2 C -0.14 -2.86 6.26 -26.73 -0.17 -3.03 16 3 C 0.15 3.49 5.28 -4.04 -0.02 3.47 16 4 N -0.58 -14.25 2.36 -165.66 -0.39 -14.64 16 5 C -0.25 -6.59 8.06 -15.06 -0.12 -6.71 16 6 H 0.06 1.56 7.07 -52.49 -0.37 1.19 16 7 C 0.01 0.29 4.96 -17.43 -0.09 0.21 16 8 N -0.89 -25.47 11.47 55.49 0.64 -24.83 16 9 Si 0.89 21.66 29.60 -169.99 -5.03 16.63 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 C 0.18 3.71 2.64 -67.92 -0.18 3.54 16 14 H 0.04 0.87 7.77 -51.93 -0.40 0.47 16 15 C -0.12 -2.37 5.09 -26.73 -0.14 -2.50 16 16 C -0.12 -1.90 5.92 -26.73 -0.16 -2.06 16 17 C -0.11 -1.61 5.20 -26.73 -0.14 -1.75 16 18 C -0.09 -1.39 2.72 -90.62 -0.25 -1.63 16 19 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 20 C -0.14 -1.90 9.19 37.16 0.34 -1.55 16 21 C -0.12 -2.21 4.53 -26.73 -0.12 -2.33 16 22 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.06 1.23 8.14 -51.92 -0.42 0.80 16 27 H 0.09 2.44 5.54 -51.93 -0.29 2.16 16 28 H 0.02 0.42 7.88 -51.93 -0.41 0.01 16 29 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.06 1.44 7.56 -51.93 -0.39 1.05 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.06 1.23 7.19 -51.93 -0.37 0.86 16 LS Contribution 307.96 15.07 4.64 4.64 Total: -1.00 -27.53 307.96 -8.53 -36.05 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -7.71 Total: -1.38 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: -0.67 Total: -16.48 kcal Atomic # 7 Polarization: -39.71 SS G_CDS: 0.25 Total: -39.47 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -27.53 -8.53 -36.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223982577.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.289 kcal (2) G-P(sol) polarization free energy of solvation -27.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds