Wall clock time and date at job start Mon Mar 30 2020 03:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47294 * 2 1 4 4 N 1.46497 * 109.47131 * 180.02562 * 3 2 1 5 5 C 1.36942 * 119.99978 * 270.00120 * 4 3 2 6 6 H 1.08000 * 119.99765 * 141.86642 * 5 4 3 7 7 C 1.38811 * 119.99471 * 321.86408 * 5 4 3 8 8 N 1.31617 * 120.00283 * 339.18072 * 7 5 4 9 9 Si 1.86804 * 119.99583 * 159.18589 * 7 5 4 10 10 H 1.48500 * 109.47145 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.46964 * 119.99779 * 9 7 5 12 12 H 1.48501 * 109.46872 * 239.99842 * 9 7 5 13 13 C 1.46499 * 120.00050 * 89.99396 * 4 3 2 14 14 H 1.09000 * 109.47368 * 5.07953 * 13 4 3 15 15 C 1.53008 * 109.46888 * 125.07203 * 13 4 3 16 16 C 1.53003 * 109.47084 * 179.97438 * 15 13 4 17 17 C 1.52999 * 109.47058 * 300.00464 * 16 15 13 18 18 C 1.52997 * 109.47371 * 60.00057 * 17 16 15 19 19 H 1.08997 * 109.47507 * 59.99889 * 18 17 16 20 20 C 1.53003 * 109.46862 * 179.97438 * 18 17 16 21 21 C 1.53001 * 109.47019 * 299.99432 * 18 17 16 22 22 H 1.08997 * 109.47022 * 60.00106 * 1 2 3 23 23 H 1.08994 * 109.47457 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46998 * 300.00407 * 1 2 3 25 25 H 1.08993 * 109.46703 * 239.99668 * 2 1 3 26 26 H 1.09007 * 109.46961 * 119.99887 * 2 1 3 27 27 H 1.09001 * 109.47431 * 59.99858 * 3 2 1 28 28 H 1.08997 * 109.47000 * 299.99908 * 3 2 1 29 29 H 0.97002 * 119.99908 * 180.02562 * 8 7 5 30 30 H 1.08998 * 109.46822 * 300.00178 * 15 13 4 31 31 H 1.09000 * 109.46504 * 60.00220 * 15 13 4 32 32 H 1.08999 * 109.46442 * 60.00225 * 16 15 13 33 33 H 1.08998 * 109.46809 * 180.02562 * 16 15 13 34 34 H 1.08997 * 109.46895 * 299.99571 * 17 16 15 35 35 H 1.09001 * 109.46771 * 180.02562 * 17 16 15 36 36 H 1.09000 * 109.46448 * 179.97438 * 20 18 17 37 37 H 1.08991 * 109.47459 * 60.00011 * 20 18 17 38 38 H 1.09001 * 109.47272 * 299.99509 * 20 18 17 39 39 H 1.09000 * 109.47242 * 179.97438 * 21 18 17 40 40 H 1.08997 * 109.47354 * 300.00551 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1902 1.4422 1.1850 6 1 5.0974 0.8646 1.2843 7 6 3.7188 2.1844 2.2591 8 7 2.8875 3.1840 2.0541 9 14 4.2644 1.7646 3.9957 10 1 5.1936 0.6069 3.9563 11 1 4.9558 2.9348 4.5938 12 1 3.0769 1.4180 4.8174 13 6 4.2370 1.4425 -1.2696 14 1 3.5319 1.5335 -2.0958 15 6 5.2099 2.6231 -1.2972 16 6 5.9748 2.6228 -2.6223 17 6 6.7562 1.3146 -2.7597 18 6 5.7834 0.1341 -2.7323 19 1 5.0785 0.2248 -3.5587 20 6 6.5649 -1.1740 -2.8704 21 6 5.0185 0.1343 -1.4071 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 1.8934 -0.5139 0.8901 27 1 1.6767 1.9564 0.8900 28 1 1.6768 1.9563 -0.8900 29 1 2.5583 3.7029 2.8046 30 1 4.6531 3.5550 -1.1988 31 1 5.9150 2.5321 -0.4710 32 1 5.2699 2.7135 -3.4486 33 1 6.6682 3.4636 -2.6416 34 1 7.4611 1.2239 -1.9333 35 1 7.3015 1.3147 -3.7035 36 1 5.8718 -2.0150 -2.8503 37 1 7.2700 -1.2650 -2.0443 38 1 7.1095 -1.1740 -3.8146 39 1 4.3251 -0.7065 -1.3877 40 1 5.7234 0.0436 -0.5807 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000223982577.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:35 Heat of formation + Delta-G solvation = -33.659058 kcal Electronic energy + Delta-G solvation = -16767.984083 eV Core-core repulsion = 14388.099883 eV Total energy + Delta-G solvation = -2379.884200 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.88156 -37.18098 -34.18438 -33.50667 -32.53245 -29.84448 -27.38508 -27.07701 -24.96857 -22.69868 -22.15560 -21.37906 -20.52449 -18.21044 -16.94198 -16.09170 -15.72063 -15.65661 -15.25021 -14.96586 -14.72456 -14.35417 -14.02713 -13.35338 -13.18890 -13.11959 -13.06288 -12.79435 -12.57101 -12.47886 -12.30925 -12.16157 -12.01767 -11.79135 -11.67827 -11.57512 -11.34708 -11.12729 -10.92892 -10.73153 -10.42192 -8.44766 -7.74678 -5.37544 1.41943 1.45734 1.54822 2.52272 3.28895 3.59943 3.92984 4.06126 4.21836 4.33699 4.41141 4.46679 4.51649 4.62972 4.70898 4.75452 4.85684 4.87234 4.88286 4.93184 5.00138 5.10353 5.12972 5.19840 5.27178 5.28128 5.35700 5.39306 5.44590 5.53162 5.57341 5.61282 5.70351 5.77088 5.79092 5.92984 6.54857 7.25258 7.96587 8.49016 9.19662 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.021007 B = 0.010018 C = 0.008304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.554139 B = 2794.350961 C = 3370.945717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.147 3.853 4 N -0.598 5.598 5 C -0.242 4.242 6 H 0.049 0.951 7 C -0.038 4.038 8 N -0.918 5.918 9 Si 0.946 3.054 10 H -0.270 1.270 11 H -0.293 1.293 12 H -0.290 1.290 13 C 0.171 3.829 14 H 0.048 0.952 15 C -0.109 4.109 16 C -0.110 4.110 17 C -0.105 4.105 18 C -0.087 4.087 19 H 0.072 0.928 20 C -0.139 4.139 21 C -0.106 4.106 22 H 0.057 0.943 23 H 0.064 0.936 24 H 0.041 0.959 25 H 0.049 0.951 26 H 0.034 0.966 27 H 0.059 0.941 28 H 0.020 0.980 29 H 0.248 0.752 30 H 0.024 0.976 31 H 0.036 0.964 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.049 0.951 35 H 0.081 0.919 36 H 0.052 0.948 37 H 0.046 0.954 38 H 0.070 0.930 39 H 0.044 0.956 40 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.201 -5.904 -9.889 11.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.021 3.979 4 N -0.318 5.318 5 C -0.373 4.373 6 H 0.067 0.933 7 C -0.235 4.235 8 N -0.563 5.563 9 Si 0.775 3.225 10 H -0.195 1.195 11 H -0.220 1.220 12 H -0.217 1.217 13 C 0.065 3.935 14 H 0.066 0.934 15 C -0.148 4.148 16 C -0.148 4.148 17 C -0.143 4.143 18 C -0.106 4.106 19 H 0.090 0.910 20 C -0.197 4.197 21 C -0.146 4.146 22 H 0.077 0.923 23 H 0.083 0.917 24 H 0.060 0.940 25 H 0.068 0.932 26 H 0.053 0.947 27 H 0.077 0.923 28 H 0.038 0.962 29 H 0.057 0.943 30 H 0.043 0.957 31 H 0.055 0.945 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.099 0.901 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.089 0.911 39 H 0.063 0.937 40 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 3.129 -5.789 -9.778 11.786 hybrid contribution 0.027 0.222 1.491 1.508 sum 3.156 -5.566 -8.287 10.470 Atomic orbital electron populations 1.21639 0.95050 1.01594 1.01282 1.21938 0.95781 0.99183 0.99881 1.20882 0.83568 0.93823 0.99578 1.44146 1.01087 1.85391 1.01183 1.19013 1.07949 1.20627 0.89731 0.93327 1.25764 1.00661 0.95197 1.01884 1.70130 1.37111 1.18857 1.30211 0.85539 0.77551 0.77603 0.81790 1.19466 1.21996 1.21721 1.20563 0.92324 0.93272 0.87375 0.93417 1.21711 0.98073 0.97913 0.97117 1.21513 0.98811 0.98083 0.96424 1.21537 0.97355 0.93569 1.01818 1.21121 0.97152 0.95567 0.96758 0.90962 1.21769 0.99806 0.96230 1.01859 1.21868 0.98240 0.97659 0.96822 0.92350 0.91708 0.94013 0.93207 0.94685 0.92309 0.96157 0.94293 0.95665 0.94468 0.91622 0.91845 0.93178 0.90078 0.92855 0.93485 0.91125 0.93712 0.94421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.53 9.91 71.98 0.71 -3.81 16 2 C -0.13 -5.17 6.26 30.59 0.19 -4.98 16 3 C 0.15 7.09 5.28 86.38 0.46 7.55 16 4 N -0.60 -29.93 2.36 -678.02 -1.60 -31.53 16 5 C -0.24 -13.32 8.06 84.03 0.68 -12.65 16 6 H 0.05 2.73 7.07 -2.91 -0.02 2.70 16 7 C -0.04 -2.16 4.96 84.86 0.42 -1.74 16 8 N -0.92 -54.43 11.47 21.65 0.25 -54.18 16 9 Si 0.95 45.56 29.60 68.60 2.03 47.59 16 10 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 12 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 13 C 0.17 7.18 2.64 45.00 0.12 7.30 16 14 H 0.05 1.94 7.77 -2.39 -0.02 1.92 16 15 C -0.11 -4.48 5.09 30.60 0.16 -4.33 16 16 C -0.11 -3.34 5.92 30.59 0.18 -3.16 16 17 C -0.11 -2.81 5.20 30.59 0.16 -2.65 16 18 C -0.09 -2.41 2.72 -10.79 -0.03 -2.44 16 19 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 20 C -0.14 -3.23 9.19 71.98 0.66 -2.56 16 21 C -0.11 -3.89 4.53 30.60 0.14 -3.75 16 22 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 23 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 24 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.03 1.53 8.14 -2.38 -0.02 1.51 16 27 H 0.06 3.26 5.54 -2.39 -0.01 3.24 16 28 H 0.02 0.94 7.88 -2.39 -0.02 0.92 16 29 H 0.25 14.25 8.31 -92.71 -0.77 13.47 16 30 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.04 1.70 7.56 -2.39 -0.02 1.68 16 32 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.04 1.53 7.19 -2.39 -0.02 1.51 16 Total: -1.00 -60.61 307.96 5.48 -55.14 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: 0.95 Total: 10.20 kcal Atomic # 6 Polarization: -31.07 SS G_CDS: 3.85 Total: -27.22 kcal Atomic # 7 Polarization: -84.35 SS G_CDS: -1.35 Total: -85.70 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -60.61 5.48 -55.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223982577.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.477 kcal (2) G-P(sol) polarization free energy of solvation -60.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds