Wall clock time and date at job start Mon Mar 30 2020 02:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47303 * 2 1 4 4 H 1.09004 * 109.47387 * 57.42150 * 3 2 1 5 5 C 1.50706 * 109.47077 * 177.42297 * 3 2 1 6 6 H 1.07998 * 119.99958 * 116.26870 * 5 3 2 7 7 C 1.37874 * 119.99896 * 296.26813 * 5 3 2 8 8 N 1.31513 * 120.00142 * 166.38276 * 7 5 3 9 9 Si 1.86800 * 120.00272 * 346.65527 * 7 5 3 10 10 H 1.48500 * 109.47323 * 272.78178 * 9 7 5 11 11 H 1.48505 * 109.46800 * 32.77837 * 9 7 5 12 12 H 1.48493 * 109.47507 * 152.77915 * 9 7 5 13 13 N 1.46902 * 109.46990 * 297.42160 * 3 2 1 14 14 C 1.46893 * 110.99997 * 156.44698 * 13 3 2 15 15 H 1.08997 * 110.01640 * 44.33550 * 14 13 3 16 16 C 1.54265 * 110.03239 * 282.89201 * 14 13 3 17 17 C 1.54883 * 104.19959 * 217.10526 * 16 14 13 18 18 C 1.54896 * 102.74585 * 37.94343 * 17 16 14 19 19 H 1.09001 * 110.48396 * 80.73845 * 18 17 16 20 20 C 1.53003 * 110.59846 * 203.32564 * 18 17 16 21 21 C 1.53876 * 110.03256 * 165.72839 * 14 13 3 22 22 H 1.09004 * 110.03053 * 238.57038 * 21 14 13 23 23 C 1.52999 * 110.03000 * 359.97438 * 21 14 13 24 24 H 1.08998 * 109.47572 * 185.11067 * 1 2 3 25 25 H 1.08998 * 109.47403 * 305.10864 * 1 2 3 26 26 H 1.08995 * 109.46919 * 65.10689 * 1 2 3 27 27 H 1.09000 * 109.47197 * 239.99303 * 2 1 3 28 28 H 1.09007 * 109.46721 * 119.99777 * 2 1 3 29 29 H 0.97001 * 120.00294 * 180.27919 * 8 7 5 30 30 H 1.00900 * 111.00007 * 280.40552 * 13 3 2 31 31 H 1.09001 * 110.48951 * 335.79032 * 16 14 13 32 32 H 1.09009 * 110.48641 * 98.42759 * 16 14 13 33 33 H 1.09000 * 110.75910 * 279.63189 * 17 16 14 34 34 H 1.08995 * 110.76108 * 156.25575 * 17 16 14 35 35 H 1.08994 * 109.47230 * 174.84098 * 20 18 17 36 36 H 1.09008 * 109.46841 * 294.84060 * 20 18 17 37 37 H 1.09001 * 109.47290 * 54.83523 * 20 18 17 38 38 H 1.09001 * 109.47312 * 52.95913 * 23 21 14 39 39 H 1.09007 * 109.46990 * 172.95720 * 23 21 14 40 40 H 1.09003 * 109.47303 * 292.95403 * 23 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6394 1.9695 0.8660 5 6 3.5457 1.4429 0.0639 6 1 4.1209 1.8444 -0.7573 7 6 4.1889 0.9307 1.1707 8 7 5.4794 0.6820 1.1248 9 14 3.2257 0.5830 2.7330 10 1 3.1740 1.8110 3.5664 11 1 1.8449 0.1654 2.3806 12 1 3.8925 -0.5039 3.4940 13 7 1.6019 2.1167 -1.2294 14 6 1.5633 3.5736 -1.0456 15 1 2.4605 3.9078 -0.5247 16 6 0.3065 3.9721 -0.2447 17 6 -0.1460 5.3068 -0.8872 18 6 0.1359 5.0743 -2.3925 19 1 -0.6683 4.4949 -2.8461 20 6 0.3088 6.4091 -3.1202 21 6 1.4548 4.2744 -2.4112 22 1 2.2989 4.9494 -2.5526 23 6 1.4216 3.2344 -3.5329 24 1 -0.3634 -1.0235 0.0915 25 1 -0.3634 0.5910 0.8407 26 1 -0.3633 0.4326 -0.9322 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 5.9312 0.3179 1.9022 30 1 2.1913 1.8660 -2.0090 31 1 -0.4700 3.2147 -0.3514 32 1 0.5549 4.1197 0.8064 33 1 0.4466 6.1390 -0.5073 34 1 -1.2087 5.4776 -0.7152 35 1 0.5961 6.2241 -4.1552 36 1 -0.6316 6.9600 -3.0970 37 1 1.0848 6.9942 -2.6266 38 1 0.6371 2.5055 -3.3295 39 1 1.2196 3.7303 -4.4823 40 1 2.3846 2.7265 -3.5860 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225114999.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:45 Heat of formation + Delta-G solvation = -21.775570 kcal Electronic energy + Delta-G solvation = -16743.166441 eV Core-core repulsion = 14363.797548 eV Total energy + Delta-G solvation = -2379.368893 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.90055 -35.64985 -32.32651 -31.65845 -30.92819 -29.05410 -26.56119 -24.59524 -23.48269 -22.40632 -20.30851 -19.45262 -18.36784 -16.89255 -15.38449 -14.83825 -14.74135 -14.25195 -13.76122 -13.49160 -13.02327 -12.72560 -12.55691 -12.31435 -12.05817 -11.76610 -11.44992 -11.32888 -11.07171 -10.90331 -10.64713 -10.52638 -10.39834 -10.28841 -10.16514 -10.05203 -9.86190 -9.61341 -9.39764 -9.05109 -8.43999 -7.21988 -6.11596 -4.07961 3.28420 3.37745 3.40921 4.41888 4.88510 4.96072 5.01945 5.20511 5.34777 5.64234 5.65041 5.70239 5.78334 5.87710 5.96617 5.99092 6.13292 6.14519 6.18165 6.21373 6.26329 6.32450 6.38655 6.43941 6.53225 6.63363 6.69055 6.79678 6.82289 6.85939 6.91838 7.12923 7.29318 7.43489 7.65904 8.17152 8.46822 8.58932 8.94965 9.55670 11.01639 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.031483 B = 0.008235 C = 0.007963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.166537 B = 3399.440932 C = 3515.260089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.115 4.115 3 C 0.185 3.815 4 H 0.027 0.973 5 C -0.548 4.548 6 H 0.069 0.931 7 C 0.077 3.923 8 N -0.895 5.895 9 Si 0.860 3.140 10 H -0.281 1.281 11 H -0.243 1.243 12 H -0.290 1.290 13 N -0.675 5.675 14 C 0.091 3.909 15 H 0.046 0.954 16 C -0.112 4.112 17 C -0.119 4.119 18 C -0.088 4.088 19 H 0.073 0.927 20 C -0.143 4.143 21 C -0.089 4.089 22 H 0.063 0.937 23 C -0.139 4.139 24 H 0.028 0.972 25 H 0.037 0.963 26 H 0.058 0.942 27 H 0.050 0.950 28 H 0.054 0.946 29 H 0.262 0.738 30 H 0.336 0.664 31 H 0.072 0.928 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.051 0.949 36 H 0.049 0.951 37 H 0.052 0.948 38 H 0.071 0.929 39 H 0.040 0.960 40 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.953 6.816 -5.497 14.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.154 4.154 3 C 0.076 3.924 4 H 0.045 0.955 5 C -0.586 4.586 6 H 0.087 0.913 7 C -0.126 4.126 8 N -0.532 5.532 9 Si 0.687 3.313 10 H -0.208 1.208 11 H -0.167 1.167 12 H -0.216 1.216 13 N -0.307 5.307 14 C -0.020 4.020 15 H 0.064 0.936 16 C -0.150 4.150 17 C -0.157 4.157 18 C -0.107 4.107 19 H 0.091 0.909 20 C -0.200 4.200 21 C -0.108 4.108 22 H 0.081 0.919 23 C -0.197 4.197 24 H 0.047 0.953 25 H 0.056 0.944 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.155 0.845 31 H 0.091 0.909 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.090 0.910 39 H 0.059 0.941 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.452 6.645 -5.267 14.250 hybrid contribution 0.842 0.000 1.041 1.339 sum -10.610 6.644 -4.226 13.213 Atomic orbital electron populations 1.21692 0.97986 0.98703 1.01203 1.21924 0.93388 0.99266 1.00801 1.19464 0.93499 0.90560 0.88871 0.95546 1.21732 0.90584 1.41508 1.04820 0.91317 1.24961 0.94640 0.94213 0.98807 1.69985 1.09689 1.43494 1.30065 0.87332 0.82125 0.78086 0.83713 1.20775 1.16705 1.21578 1.61100 1.56992 1.04922 1.07649 1.21946 0.96716 0.89562 0.93790 0.93561 1.22394 0.98216 0.96091 0.98343 1.22526 1.00072 0.97975 0.95160 1.21976 0.97690 0.95561 0.95478 0.90896 1.21810 1.01037 0.97063 1.00084 1.21885 0.96763 0.96557 0.95617 0.91867 1.21746 1.02473 0.98981 0.96483 0.95274 0.94411 0.92342 0.93079 0.92729 0.92783 0.84478 0.90897 0.92680 0.92022 0.92308 0.93018 0.93226 0.92879 0.90971 0.94052 0.92830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 9.71 37.16 0.36 -2.20 16 2 C -0.12 -2.53 4.94 -26.73 -0.13 -2.66 16 3 C 0.19 4.28 1.42 -68.86 -0.10 4.18 16 4 H 0.03 0.64 6.20 -51.93 -0.32 0.32 16 5 C -0.55 -15.09 8.67 -34.44 -0.30 -15.39 16 6 H 0.07 2.07 7.98 -52.49 -0.42 1.65 16 7 C 0.08 2.19 5.36 -17.82 -0.10 2.10 16 8 N -0.90 -27.29 13.96 55.43 0.77 -26.52 16 9 Si 0.86 21.20 25.86 -169.99 -4.40 16.81 16 10 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 11 H -0.24 -5.61 5.20 56.52 0.29 -5.32 16 12 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 13 N -0.67 -13.30 4.40 -99.78 -0.44 -13.74 16 14 C 0.09 1.64 3.08 -66.60 -0.21 1.44 16 15 H 0.05 0.98 7.73 -51.93 -0.40 0.58 16 16 C -0.11 -1.83 5.80 -25.08 -0.15 -1.98 16 17 C -0.12 -1.59 6.33 -24.74 -0.16 -1.75 16 18 C -0.09 -1.14 2.98 -88.96 -0.27 -1.41 16 19 H 0.07 0.94 7.86 -51.93 -0.41 0.53 16 20 C -0.14 -1.57 9.12 37.16 0.34 -1.23 16 21 C -0.09 -1.34 3.07 -89.50 -0.27 -1.62 16 22 H 0.06 0.96 7.84 -51.93 -0.41 0.55 16 23 C -0.14 -1.99 7.78 37.16 0.29 -1.70 16 24 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.06 1.04 7.83 -51.93 -0.41 0.63 16 27 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.05 1.26 4.43 -51.93 -0.23 1.03 16 29 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 30 H 0.34 6.74 5.92 -39.29 -0.23 6.50 16 31 H 0.07 1.22 8.05 -51.93 -0.42 0.80 16 32 H 0.05 0.93 8.14 -51.92 -0.42 0.51 16 33 H 0.06 0.80 8.05 -51.93 -0.42 0.39 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.05 0.49 8.14 -51.92 -0.42 0.06 16 37 H 0.05 0.59 8.12 -51.93 -0.42 0.16 16 38 H 0.07 1.07 7.46 -51.93 -0.39 0.68 16 39 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.05 0.81 7.07 -51.93 -0.37 0.44 16 LS Contribution 299.91 15.07 4.52 4.52 Total: -1.00 -28.53 299.91 -7.69 -36.22 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -7.46 Total: 4.94 kcal Atomic # 6 Polarization: -21.54 SS G_CDS: -0.68 Total: -22.22 kcal Atomic # 7 Polarization: -40.60 SS G_CDS: 0.33 Total: -40.26 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.40 Total: 16.81 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.53 -7.69 -36.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225114999.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.442 kcal (2) G-P(sol) polarization free energy of solvation -28.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds