Wall clock time and date at job start Mon Mar 30 2020 03:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47114 * 2 1 4 4 C 1.50698 * 109.46783 * 120.00037 * 2 1 3 5 5 H 1.07996 * 120.00091 * 120.00357 * 4 2 1 6 6 C 1.37883 * 119.99829 * 299.99569 * 4 2 1 7 7 N 1.31512 * 120.00414 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99638 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47485 * 90.00059 * 8 6 4 10 10 H 1.48502 * 109.46905 * 210.00402 * 8 6 4 11 11 H 1.48500 * 109.47157 * 329.99980 * 8 6 4 12 12 N 1.46892 * 109.46931 * 240.00066 * 2 1 3 13 13 C 1.46896 * 111.00255 * 85.00172 * 12 2 1 14 14 H 1.08996 * 109.47194 * 325.00055 * 13 12 2 15 15 C 1.52997 * 109.47114 * 84.99887 * 13 12 2 16 16 C 1.53006 * 109.47127 * 180.02562 * 15 13 12 17 17 C 1.52999 * 109.46626 * 299.99539 * 16 15 13 18 18 C 1.52997 * 109.46991 * 60.00378 * 17 16 15 19 19 H 1.09000 * 109.47611 * 59.99933 * 18 17 16 20 20 C 1.53002 * 109.47143 * 179.97438 * 18 17 16 21 21 C 1.52996 * 109.47131 * 299.99311 * 18 17 16 22 22 H 1.08996 * 109.47452 * 300.00000 * 21 18 17 23 23 C 1.52997 * 109.47131 * 179.97438 * 21 18 17 24 24 H 1.08998 * 109.47114 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.47291 * 300.00337 * 1 2 3 26 26 H 1.09001 * 109.47055 * 59.99758 * 1 2 3 27 27 H 0.96997 * 119.99650 * 180.02562 * 7 6 4 28 28 H 1.00905 * 110.99760 * 208.95665 * 12 2 1 29 29 H 1.09001 * 109.47502 * 60.00479 * 15 13 12 30 30 H 1.09001 * 109.47289 * 300.00275 * 15 13 12 31 31 H 1.08993 * 109.46955 * 60.00011 * 16 15 13 32 32 H 1.09000 * 109.47050 * 179.97438 * 16 15 13 33 33 H 1.09002 * 109.46719 * 180.02562 * 17 16 15 34 34 H 1.08993 * 109.47839 * 299.99931 * 17 16 15 35 35 H 1.09000 * 109.47312 * 179.97438 * 20 18 17 36 36 H 1.09002 * 109.47593 * 300.00023 * 20 18 17 37 37 H 1.09004 * 109.46930 * 59.99935 * 20 18 17 38 38 H 1.09000 * 109.47611 * 300.00622 * 23 21 18 39 39 H 1.09001 * 109.47289 * 60.00050 * 23 21 18 40 40 H 1.09002 * 109.47153 * 180.02562 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9428 0.8298 2.6034 8 14 2.3224 -1.1195 4.0080 9 1 3.6304 -0.5441 4.4120 10 1 1.3442 -0.9489 5.1123 11 1 2.4878 -2.5653 3.7122 12 7 2.0196 -0.6925 -1.1994 13 6 2.0824 0.2226 -2.3468 14 1 1.2577 0.9329 -2.2906 15 6 3.4111 0.9808 -2.3223 16 6 3.4763 1.9344 -3.5171 17 6 3.3706 1.1325 -4.8158 18 6 2.0420 0.3742 -4.8403 19 1 1.2171 1.0845 -4.7838 20 6 1.9360 -0.4272 -6.1393 21 6 1.9768 -0.5793 -3.6456 22 1 2.8016 -1.2896 -3.7022 23 6 0.6479 -1.3370 -3.6698 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 0.7088 1.1613 3.4845 28 1 2.9173 -1.1205 -1.0287 29 1 4.2360 0.2705 -2.3786 30 1 3.4863 1.5524 -1.3972 31 1 2.6515 2.6447 -3.4605 32 1 4.4227 2.4749 -3.4994 33 1 3.4175 1.8117 -5.6670 34 1 4.1954 0.4222 -4.8725 35 1 0.9897 -0.9678 -6.1566 36 1 1.9823 0.2523 -6.9904 37 1 2.7609 -1.1376 -6.1963 38 1 -0.1767 -0.6265 -3.6130 39 1 0.5721 -1.9082 -4.5950 40 1 0.6013 -2.0160 -2.8183 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225156167.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:15 Heat of formation + Delta-G solvation = -36.982721 kcal Electronic energy + Delta-G solvation = -16594.764826 eV Core-core repulsion = 14214.736502 eV Total energy + Delta-G solvation = -2380.028325 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.09411 -35.37786 -32.82126 -32.49335 -30.32128 -27.77616 -26.10711 -25.21174 -24.72164 -21.12225 -20.67098 -19.54574 -19.31708 -16.44024 -14.95913 -14.67381 -14.36480 -14.28389 -13.98806 -13.62717 -13.22274 -12.62208 -12.34558 -12.17080 -11.63938 -11.62005 -11.47683 -11.28851 -11.17270 -10.92092 -10.76695 -10.54912 -10.53900 -10.32457 -10.18290 -10.07608 -9.96570 -9.71511 -9.40941 -8.77350 -8.43817 -7.11417 -5.99463 -4.05383 3.30706 3.37460 3.41423 4.42424 4.87100 4.94702 5.05902 5.31719 5.38199 5.39793 5.53548 5.67213 5.74355 5.80670 5.87455 5.92498 6.00382 6.03539 6.12951 6.19457 6.24494 6.36884 6.42812 6.49025 6.57313 6.59378 6.75413 6.90507 6.94458 6.99364 7.21602 7.31485 7.59546 7.82517 7.96281 8.32720 8.48189 8.75881 9.07126 9.60504 11.06806 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.042714 B = 0.006637 C = 0.006297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.361459 B = 4217.751112 C = 4445.504501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.213 3.787 3 H 0.000 1.000 4 C -0.516 4.516 5 H 0.058 0.942 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.895 3.105 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.681 5.681 13 C 0.094 3.906 14 H 0.068 0.932 15 C -0.147 4.147 16 C -0.115 4.115 17 C -0.111 4.111 18 C -0.089 4.089 19 H 0.066 0.934 20 C -0.146 4.146 21 C -0.070 4.070 22 H 0.061 0.939 23 C -0.135 4.135 24 H 0.030 0.970 25 H 0.078 0.922 26 H 0.003 0.997 27 H 0.260 0.740 28 H 0.328 0.672 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.047 0.953 37 H 0.051 0.949 38 H 0.044 0.956 39 H 0.040 0.960 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.791 0.047 -13.462 13.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.105 3.895 3 H 0.018 0.982 4 C -0.555 4.555 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.723 3.277 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.311 5.311 13 C -0.017 4.017 14 H 0.086 0.914 15 C -0.186 4.186 16 C -0.153 4.153 17 C -0.149 4.149 18 C -0.108 4.108 19 H 0.084 0.916 20 C -0.203 4.203 21 C -0.089 4.089 22 H 0.080 0.920 23 C -0.193 4.193 24 H 0.049 0.951 25 H 0.097 0.903 26 H 0.022 0.978 27 H 0.070 0.930 28 H 0.146 0.854 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.063 -0.099 -13.457 13.614 hybrid contribution 1.107 0.216 1.173 1.627 sum 3.169 0.116 -12.284 12.687 Atomic orbital electron populations 1.21711 0.98080 0.99176 0.99147 1.19067 0.92388 0.92368 0.85666 0.98196 1.21286 1.31216 1.12400 0.90568 0.92351 1.24917 0.95094 0.95025 0.98995 1.69901 1.36721 1.22996 1.23337 0.86554 0.78437 0.80091 0.82642 1.20838 1.21256 1.19888 1.60777 1.31799 1.32586 1.05895 1.21527 0.95344 0.93255 0.91530 0.91408 1.22289 0.99447 0.98896 0.98005 1.21480 1.01044 0.97952 0.94859 1.21574 0.97548 0.98590 0.97151 1.21184 0.97454 0.97239 0.94874 0.91583 1.21866 1.01776 0.99855 0.96808 1.21075 0.98297 0.96356 0.93216 0.92007 1.21717 0.96337 1.00211 1.01000 0.95106 0.90317 0.97819 0.93018 0.85440 0.92500 0.91811 0.92311 0.92768 0.92745 0.92344 0.92397 0.93401 0.93029 0.93732 0.94150 0.90991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.09 9.17 37.16 0.34 -2.75 16 2 C 0.21 5.38 2.41 -68.87 -0.17 5.21 16 3 H 0.00 0.01 7.11 -51.93 -0.37 -0.36 16 4 C -0.52 -14.20 8.59 -34.44 -0.30 -14.50 16 5 H 0.06 1.59 7.62 -52.49 -0.40 1.19 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -25.66 11.32 55.43 0.63 -25.04 16 8 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 12 N -0.68 -14.37 5.28 -100.96 -0.53 -14.91 16 13 C 0.09 1.69 1.72 -67.72 -0.12 1.57 16 14 H 0.07 1.34 7.11 -51.93 -0.37 0.97 16 15 C -0.15 -2.43 5.16 -26.73 -0.14 -2.57 16 16 C -0.12 -1.58 5.92 -26.73 -0.16 -1.74 16 17 C -0.11 -1.36 5.20 -26.73 -0.14 -1.50 16 18 C -0.09 -1.14 2.25 -90.62 -0.20 -1.34 16 19 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 20 C -0.15 -1.60 8.84 37.16 0.33 -1.27 16 21 C -0.07 -1.06 1.96 -90.62 -0.18 -1.24 16 22 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 23 C -0.14 -2.07 8.68 37.16 0.32 -1.74 16 24 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.08 2.16 6.07 -51.93 -0.32 1.85 16 26 H 0.00 0.07 7.43 -51.93 -0.39 -0.32 16 27 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 28 H 0.33 6.89 7.96 -39.29 -0.31 6.58 16 29 H 0.06 0.91 8.13 -51.93 -0.42 0.49 16 30 H 0.06 1.20 7.43 -51.93 -0.39 0.81 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.63 6.43 -51.93 -0.33 0.29 16 36 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.04 0.53 6.43 -51.93 -0.33 0.19 16 40 H 0.07 1.25 7.60 -51.93 -0.39 0.85 16 LS Contribution 301.73 15.07 4.55 4.55 Total: -1.00 -27.58 301.73 -8.26 -35.84 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -7.39 Total: 3.40 kcal Atomic # 6 Polarization: -19.75 SS G_CDS: -0.50 Total: -20.25 kcal Atomic # 7 Polarization: -40.03 SS G_CDS: 0.09 Total: -39.94 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -27.58 -8.26 -35.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225156167.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.142 kcal (2) G-P(sol) polarization free energy of solvation -27.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds