Wall clock time and date at job start Mon Mar 30 2020 03:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47114 * 2 1 4 4 C 1.50698 * 109.46783 * 120.00037 * 2 1 3 5 5 H 1.07996 * 120.00091 * 120.00357 * 4 2 1 6 6 C 1.37883 * 119.99829 * 299.99569 * 4 2 1 7 7 N 1.31512 * 120.00414 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99638 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47485 * 90.00059 * 8 6 4 10 10 H 1.48502 * 109.46905 * 210.00402 * 8 6 4 11 11 H 1.48500 * 109.47157 * 329.99980 * 8 6 4 12 12 N 1.46892 * 109.46931 * 240.00066 * 2 1 3 13 13 C 1.46896 * 111.00255 * 85.00172 * 12 2 1 14 14 H 1.08996 * 109.47194 * 325.00055 * 13 12 2 15 15 C 1.52997 * 109.47114 * 84.99887 * 13 12 2 16 16 C 1.53006 * 109.47127 * 180.02562 * 15 13 12 17 17 C 1.52999 * 109.46626 * 299.99539 * 16 15 13 18 18 C 1.52997 * 109.46991 * 60.00378 * 17 16 15 19 19 H 1.09000 * 109.47611 * 59.99933 * 18 17 16 20 20 C 1.53002 * 109.47143 * 179.97438 * 18 17 16 21 21 C 1.52996 * 109.47131 * 299.99311 * 18 17 16 22 22 H 1.08996 * 109.47452 * 300.00000 * 21 18 17 23 23 C 1.52997 * 109.47131 * 179.97438 * 21 18 17 24 24 H 1.08998 * 109.47114 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.47291 * 300.00337 * 1 2 3 26 26 H 1.09001 * 109.47055 * 59.99758 * 1 2 3 27 27 H 0.96997 * 119.99650 * 180.02562 * 7 6 4 28 28 H 1.00905 * 110.99760 * 208.95665 * 12 2 1 29 29 H 1.09001 * 109.47502 * 60.00479 * 15 13 12 30 30 H 1.09001 * 109.47289 * 300.00275 * 15 13 12 31 31 H 1.08993 * 109.46955 * 60.00011 * 16 15 13 32 32 H 1.09000 * 109.47050 * 179.97438 * 16 15 13 33 33 H 1.09002 * 109.46719 * 180.02562 * 17 16 15 34 34 H 1.08993 * 109.47839 * 299.99931 * 17 16 15 35 35 H 1.09000 * 109.47312 * 179.97438 * 20 18 17 36 36 H 1.09002 * 109.47593 * 300.00023 * 20 18 17 37 37 H 1.09004 * 109.46930 * 59.99935 * 20 18 17 38 38 H 1.09000 * 109.47611 * 300.00622 * 23 21 18 39 39 H 1.09001 * 109.47289 * 60.00050 * 23 21 18 40 40 H 1.09002 * 109.47153 * 180.02562 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9428 0.8298 2.6034 8 14 2.3224 -1.1195 4.0080 9 1 3.6304 -0.5441 4.4120 10 1 1.3442 -0.9489 5.1123 11 1 2.4878 -2.5653 3.7122 12 7 2.0196 -0.6925 -1.1994 13 6 2.0824 0.2226 -2.3468 14 1 1.2577 0.9329 -2.2906 15 6 3.4111 0.9808 -2.3223 16 6 3.4763 1.9344 -3.5171 17 6 3.3706 1.1325 -4.8158 18 6 2.0420 0.3742 -4.8403 19 1 1.2171 1.0845 -4.7838 20 6 1.9360 -0.4272 -6.1393 21 6 1.9768 -0.5793 -3.6456 22 1 2.8016 -1.2896 -3.7022 23 6 0.6479 -1.3370 -3.6698 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 0.7088 1.1613 3.4845 28 1 2.9173 -1.1205 -1.0287 29 1 4.2360 0.2705 -2.3786 30 1 3.4863 1.5524 -1.3972 31 1 2.6515 2.6447 -3.4605 32 1 4.4227 2.4749 -3.4994 33 1 3.4175 1.8117 -5.6670 34 1 4.1954 0.4222 -4.8725 35 1 0.9897 -0.9678 -6.1566 36 1 1.9823 0.2523 -6.9904 37 1 2.7609 -1.1376 -6.1963 38 1 -0.1767 -0.6265 -3.6130 39 1 0.5721 -1.9082 -4.5950 40 1 0.6013 -2.0160 -2.8183 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000225156167.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:14 Heat of formation + Delta-G solvation = -52.216324 kcal Electronic energy + Delta-G solvation = -16595.425405 eV Core-core repulsion = 14214.736502 eV Total energy + Delta-G solvation = -2380.688903 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.38678 -37.11170 -34.55295 -33.79657 -31.95430 -29.36320 -27.45285 -27.16951 -26.06567 -22.66184 -21.87162 -21.23684 -20.61228 -18.46995 -16.87413 -16.08659 -15.78656 -15.58702 -15.28251 -15.05915 -14.66955 -14.38768 -13.65912 -13.54008 -13.36555 -12.86220 -12.80493 -12.76150 -12.62057 -12.55666 -12.46617 -12.21526 -12.05372 -12.02321 -11.75068 -11.65559 -11.22146 -10.98646 -10.91430 -10.70448 -10.55116 -8.88334 -8.12903 -6.26787 1.40797 1.42049 1.52787 2.41234 3.15532 3.57224 3.78734 3.93157 4.15886 4.19823 4.26291 4.51353 4.55674 4.65008 4.69749 4.80399 4.83257 4.86742 4.95648 5.04286 5.07958 5.09103 5.15900 5.17144 5.25463 5.31189 5.32576 5.36344 5.44621 5.48063 5.55891 5.69123 5.73022 5.73645 5.89826 6.23542 6.53662 6.83856 7.05977 7.43874 8.92817 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.042714 B = 0.006637 C = 0.006297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.361459 B = 4217.751112 C = 4445.504501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.220 3.780 3 H -0.033 1.033 4 C -0.535 4.535 5 H 0.058 0.942 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.962 3.038 9 H -0.276 1.276 10 H -0.283 1.283 11 H -0.268 1.268 12 N -0.677 5.677 13 C 0.094 3.906 14 H 0.044 0.956 15 C -0.142 4.142 16 C -0.112 4.112 17 C -0.106 4.106 18 C -0.086 4.086 19 H 0.059 0.941 20 C -0.141 4.141 21 C -0.063 4.063 22 H 0.065 0.935 23 C -0.131 4.131 24 H 0.026 0.974 25 H 0.054 0.946 26 H 0.016 0.984 27 H 0.262 0.738 28 H 0.329 0.671 29 H 0.064 0.936 30 H 0.030 0.970 31 H 0.052 0.948 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.057 0.943 38 H 0.036 0.964 39 H 0.066 0.934 40 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.699 -0.643 -15.019 15.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.112 3.888 3 H -0.016 1.016 4 C -0.574 4.574 5 H 0.076 0.924 6 C -0.187 4.187 7 N -0.559 5.559 8 Si 0.787 3.213 9 H -0.202 1.202 10 H -0.209 1.209 11 H -0.192 1.192 12 N -0.306 5.306 13 C -0.016 4.016 14 H 0.063 0.937 15 C -0.181 4.181 16 C -0.150 4.150 17 C -0.143 4.143 18 C -0.105 4.105 19 H 0.078 0.922 20 C -0.198 4.198 21 C -0.082 4.082 22 H 0.084 0.916 23 C -0.189 4.189 24 H 0.045 0.955 25 H 0.073 0.927 26 H 0.035 0.965 27 H 0.071 0.929 28 H 0.146 0.854 29 H 0.082 0.918 30 H 0.049 0.951 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.055 0.945 39 H 0.085 0.915 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.976 -0.791 -15.037 15.349 hybrid contribution 0.812 0.460 1.636 1.883 sum 3.787 -0.331 -13.402 13.930 Atomic orbital electron populations 1.21521 0.98122 0.98590 0.98565 1.18823 0.92291 0.90693 0.87037 1.01595 1.21610 1.31457 1.12575 0.91723 0.92385 1.25743 0.95204 0.95702 1.02067 1.70034 1.37578 1.24209 1.24065 0.85497 0.77954 0.79070 0.78731 1.20158 1.20889 1.19231 1.60722 1.31819 1.32925 1.05166 1.21600 0.95304 0.92961 0.91756 0.93739 1.22192 0.98722 0.99182 0.98050 1.21462 1.01641 0.97451 0.94420 1.21557 0.97265 0.98817 0.96683 1.21158 0.97753 0.96843 0.94737 0.92248 1.21822 1.02092 1.00008 0.95912 1.21022 0.98287 0.96494 0.92427 0.91634 1.21671 0.96162 0.99781 1.01258 0.95462 0.92729 0.96489 0.92926 0.85395 0.91762 0.95098 0.92903 0.91307 0.90481 0.91590 0.92311 0.91746 0.92408 0.94530 0.91547 0.93454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.68 9.17 71.98 0.66 -5.02 16 2 C 0.22 11.51 2.41 44.17 0.11 11.61 16 3 H -0.03 -1.95 7.11 -2.39 -0.02 -1.96 16 4 C -0.54 -30.00 8.59 25.60 0.22 -29.78 16 5 H 0.06 3.18 7.62 -2.91 -0.02 3.16 16 6 C 0.01 0.66 5.30 84.66 0.45 1.11 16 7 N -0.92 -54.10 11.32 21.45 0.24 -53.86 16 8 Si 0.96 44.17 29.54 68.60 2.03 46.20 16 9 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 10 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 11 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 12 N -0.68 -29.16 5.28 -473.34 -2.50 -31.66 16 13 C 0.09 3.40 1.72 44.92 0.08 3.48 16 14 H 0.04 1.81 7.11 -2.39 -0.02 1.79 16 15 C -0.14 -4.72 5.16 30.60 0.16 -4.56 16 16 C -0.11 -2.90 5.92 30.60 0.18 -2.72 16 17 C -0.11 -2.27 5.20 30.59 0.16 -2.11 16 18 C -0.09 -1.99 2.25 -10.79 -0.02 -2.02 16 19 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 20 C -0.14 -2.59 8.84 71.98 0.64 -1.95 16 21 C -0.06 -1.82 1.96 -10.79 -0.02 -1.84 16 22 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 23 C -0.13 -3.87 8.68 71.98 0.62 -3.24 16 24 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.05 3.09 6.07 -2.38 -0.01 3.08 16 26 H 0.02 0.78 7.43 -2.39 -0.02 0.76 16 27 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 28 H 0.33 14.00 7.96 -89.69 -0.71 13.28 16 29 H 0.06 2.01 8.13 -2.39 -0.02 1.99 16 30 H 0.03 1.20 7.43 -2.39 -0.02 1.18 16 31 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.06 1.07 6.43 -2.39 -0.02 1.06 16 36 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 38 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.07 1.59 6.43 -2.39 -0.02 1.58 16 40 H 0.05 1.62 7.60 -2.39 -0.02 1.60 16 Total: -1.00 -59.80 301.73 3.26 -56.54 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: 0.27 Total: 19.81 kcal Atomic # 6 Polarization: -40.27 SS G_CDS: 3.23 Total: -37.04 kcal Atomic # 7 Polarization: -83.26 SS G_CDS: -2.26 Total: -85.51 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -59.80 3.26 -56.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225156167.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.325 kcal (2) G-P(sol) polarization free energy of solvation -59.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds