Wall clock time and date at job start Mon Mar 30 2020 03:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.57340 * 2 1 4 4 C 1.53117 * 109.52025 * 239.84271 * 2 1 3 5 5 C 1.53045 * 109.31153 * 297.76634 * 4 2 1 6 6 N 1.46842 * 109.52326 * 300.80524 * 5 4 2 7 7 C 1.46898 * 111.00034 * 185.83766 * 6 5 4 8 8 C 1.53012 * 109.47033 * 67.91960 * 7 6 5 9 9 C 1.52994 * 109.46866 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.46934 * 180.02562 * 9 8 7 11 11 H 1.07994 * 120.00156 * 359.97438 * 10 9 8 12 12 C 1.37881 * 119.99762 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00423 * 359.97438 * 12 10 9 14 14 Si 1.86807 * 119.99675 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47107 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47229 * 119.99786 * 14 12 10 17 17 H 1.48504 * 109.46853 * 240.00056 * 14 12 10 18 18 C 1.46843 * 111.20107 * 61.73694 * 6 5 4 19 19 H 1.09006 * 109.45938 * 58.27487 * 18 6 5 20 20 C 1.52997 * 109.46335 * 178.24059 * 18 6 5 21 21 C 1.53034 * 109.52561 * 298.26256 * 18 6 5 22 22 H 1.09004 * 109.47201 * 180.15986 * 1 2 3 23 23 H 1.08998 * 109.47373 * 300.15661 * 1 2 3 24 24 H 1.08998 * 109.47717 * 60.15778 * 1 2 3 25 25 H 1.08997 * 109.50405 * 177.81195 * 4 2 1 26 26 H 1.09000 * 109.50737 * 57.72796 * 4 2 1 27 27 H 1.09003 * 109.45750 * 60.82247 * 5 4 2 28 28 H 1.09002 * 109.46065 * 180.79451 * 5 4 2 29 29 H 1.09002 * 109.47502 * 187.91781 * 7 6 5 30 30 H 1.08994 * 109.46949 * 307.92449 * 7 6 5 31 31 H 1.09002 * 109.46830 * 300.00232 * 8 7 6 32 32 H 1.08997 * 109.46447 * 60.00120 * 8 7 6 33 33 H 1.09002 * 109.47398 * 299.99655 * 9 8 7 34 34 H 1.08994 * 109.47441 * 59.99921 * 9 8 7 35 35 H 0.96995 * 119.99866 * 180.02562 * 13 12 10 36 36 H 1.09004 * 109.47265 * 52.07361 * 20 18 6 37 37 H 1.09006 * 109.47120 * 172.07051 * 20 18 6 38 38 H 1.09002 * 109.47332 * 292.07081 * 20 18 6 39 39 H 1.09004 * 109.50193 * 179.12046 * 21 18 6 40 40 H 1.09000 * 109.50247 * 299.23472 * 21 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8951 1.0270 0.0000 4 6 2.0416 -0.7250 -1.2478 5 6 1.5765 -2.1827 -1.2126 6 7 2.0924 -2.8333 -0.0015 7 6 1.7822 -4.2691 -0.0025 8 6 2.5814 -4.9628 -1.1077 9 6 2.2579 -6.4581 -1.1090 10 6 3.0455 -7.1414 -2.1971 11 1 3.7099 -6.5666 -2.8251 12 6 2.9169 -8.5004 -2.3915 13 7 2.1074 -9.2004 -1.6272 14 14 3.8926 -9.3473 -3.7408 15 1 4.7236 -8.3446 -4.4546 16 1 4.7719 -10.3825 -3.1406 17 1 2.9575 -9.9877 -4.7003 18 6 1.5767 -2.1843 1.2106 19 1 0.4871 -2.2178 1.2049 20 6 2.1026 -2.9189 2.4453 21 6 2.0417 -0.7268 1.2477 22 1 -0.3634 -1.0277 0.0029 23 1 -0.3634 0.5162 0.8885 24 1 -0.3634 0.5113 -0.8913 25 1 3.1309 -0.6911 -1.2675 26 1 1.6462 -0.2383 -2.1394 27 1 0.4870 -2.2161 -1.2070 28 1 1.9513 -2.7048 -2.0930 29 1 2.0487 -4.6991 0.9631 30 1 0.7164 -4.4105 -0.1815 31 1 2.3149 -4.5328 -2.0732 32 1 3.6472 -4.8213 -0.9286 33 1 2.5241 -6.8884 -0.1435 34 1 1.1921 -6.5992 -1.2882 35 1 2.0173 -10.1565 -1.7638 36 1 3.1870 -3.0090 2.3800 37 1 1.8380 -2.3582 3.3419 38 1 1.6577 -3.9128 2.4938 39 1 1.6458 -0.2411 2.1397 40 1 3.1310 -0.6928 1.2673 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225722434.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:38 Heat of formation + Delta-G solvation = -28.794629 kcal Electronic energy + Delta-G solvation = -16130.788713 eV Core-core repulsion = 13751.115450 eV Total energy + Delta-G solvation = -2379.673262 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.57692 -35.25400 -33.38971 -32.38212 -30.87294 -28.01765 -26.69671 -26.02515 -23.71670 -22.25450 -20.85497 -19.79213 -18.50009 -16.31409 -15.70346 -15.25519 -14.58587 -14.50747 -14.34551 -14.08158 -13.47456 -13.30520 -12.59279 -12.29768 -12.00128 -11.78310 -11.70293 -11.52199 -11.45570 -11.28495 -10.88886 -10.84906 -10.62885 -10.50805 -10.48454 -10.12163 -9.97860 -9.47348 -9.25585 -8.98292 -8.30410 -7.88498 -5.95715 -3.97354 3.33845 3.41090 3.45866 4.16972 4.50600 4.75754 4.77516 4.91186 5.19559 5.33209 5.40150 5.41541 5.46754 5.52858 5.60140 5.67903 5.77992 5.84704 5.91530 5.98075 5.98988 5.99648 6.11232 6.18279 6.24971 6.27996 6.36442 6.44238 6.49434 6.79411 6.89449 7.20902 7.52395 7.54681 7.74278 7.89720 8.05518 8.49361 9.10270 9.66477 11.15853 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.046061 B = 0.005187 C = 0.004909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.740926 B = 5396.882996 C = 5702.753910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.094 4.094 3 H 0.066 0.934 4 C -0.111 4.111 5 C 0.052 3.948 6 N -0.533 5.533 7 C 0.051 3.949 8 C -0.103 4.103 9 C 0.021 3.979 10 C -0.516 4.516 11 H 0.055 0.945 12 C 0.055 3.945 13 N -0.897 5.897 14 Si 0.891 3.109 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.285 1.285 18 C 0.079 3.921 19 H 0.037 0.963 20 C -0.149 4.149 21 C -0.105 4.105 22 H 0.058 0.942 23 H 0.050 0.950 24 H 0.052 0.948 25 H 0.069 0.931 26 H 0.061 0.939 27 H 0.030 0.970 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.025 0.975 31 H 0.045 0.955 32 H 0.054 0.946 33 H 0.015 0.985 34 H 0.012 0.988 35 H 0.259 0.741 36 H 0.065 0.935 37 H 0.054 0.946 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.329 17.444 5.226 18.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.112 4.112 3 H 0.085 0.915 4 C -0.149 4.149 5 C -0.076 4.076 6 N -0.258 5.258 7 C -0.076 4.076 8 C -0.141 4.141 9 C -0.016 4.016 10 C -0.554 4.554 11 H 0.073 0.927 12 C -0.145 4.145 13 N -0.537 5.537 14 Si 0.719 3.281 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.211 1.211 18 C -0.029 4.029 19 H 0.055 0.945 20 C -0.206 4.206 21 C -0.143 4.143 22 H 0.077 0.923 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.088 0.912 26 H 0.080 0.920 27 H 0.048 0.952 28 H 0.099 0.901 29 H 0.093 0.907 30 H 0.043 0.957 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.033 0.967 34 H 0.031 0.969 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.887 17.323 5.260 18.202 hybrid contribution -0.458 -0.720 -0.739 1.129 sum -2.345 16.602 4.521 17.366 Atomic orbital electron populations 1.21940 0.95723 1.01991 1.01172 1.21166 0.95498 0.98916 0.95661 0.91527 1.21615 1.01456 0.94936 0.96883 1.22132 0.97003 0.94423 0.94033 1.62025 1.59481 1.03291 1.00983 1.22370 0.97809 0.86043 1.01347 1.21634 0.98994 0.97888 0.95581 1.19079 0.96671 0.88832 0.97062 1.21302 1.24922 0.92852 1.16355 0.92656 1.25029 0.95525 0.97640 0.96343 1.69977 1.37527 1.07040 1.39144 0.86557 0.79988 0.79566 0.82026 1.19725 1.21032 1.21085 1.21590 0.96585 0.93881 0.90857 0.94523 1.21929 1.02382 1.00204 0.96134 1.21659 1.01425 0.94278 0.96916 0.92349 0.93044 0.92936 0.91200 0.91986 0.95187 0.90128 0.90711 0.95700 0.93623 0.92703 0.96668 0.96916 0.93146 0.91607 0.92717 0.92269 0.92100 0.91190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 8.62 37.16 0.32 -1.20 16 2 C -0.09 -0.99 3.22 -90.46 -0.29 -1.28 16 3 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 4 C -0.11 -1.31 5.59 -26.65 -0.15 -1.46 16 5 C 0.05 0.75 5.05 -3.83 -0.02 0.73 16 6 N -0.53 -8.30 4.48 -226.69 -1.01 -9.31 16 7 C 0.05 0.93 4.71 -3.82 -0.02 0.91 16 8 C -0.10 -2.22 5.13 -26.73 -0.14 -2.35 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.52 -14.97 9.11 -34.44 -0.31 -15.29 16 11 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 12 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 13 N -0.90 -27.45 13.29 55.43 0.74 -26.71 16 14 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 15 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 16 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 17 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 18 C 0.08 1.05 2.20 -67.73 -0.15 0.90 16 19 H 0.04 0.50 6.51 -51.93 -0.34 0.16 16 20 C -0.15 -1.87 8.52 37.16 0.32 -1.55 16 21 C -0.10 -1.18 4.87 -26.61 -0.13 -1.31 16 22 H 0.06 0.66 4.92 -51.93 -0.26 0.41 16 23 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.03 0.43 6.52 -51.93 -0.34 0.09 16 28 H 0.08 1.26 6.30 -51.93 -0.33 0.93 16 29 H 0.07 1.35 5.73 -51.93 -0.30 1.05 16 30 H 0.02 0.46 8.10 -51.93 -0.42 0.04 16 31 H 0.05 0.97 6.50 -51.93 -0.34 0.63 16 32 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.05 0.57 8.13 -51.93 -0.42 0.15 16 38 H 0.06 0.79 6.55 -51.93 -0.34 0.45 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 300.96 15.07 4.54 4.54 Total: -1.00 -30.00 300.96 -8.84 -38.84 By element: Atomic # 1 Polarization: 2.87 SS G_CDS: -7.27 Total: -4.40 kcal Atomic # 6 Polarization: -19.16 SS G_CDS: -0.81 Total: -19.96 kcal Atomic # 7 Polarization: -35.74 SS G_CDS: -0.28 Total: -36.02 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.00 -8.84 -38.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225722434.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.042 kcal (2) G-P(sol) polarization free energy of solvation -29.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds