Wall clock time and date at job start Mon Mar 30 2020 03:46:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.08999 * 109.57340 * 2 1
4 4 C 1.53117 * 109.52025 * 239.84271 * 2 1 3
5 5 C 1.53045 * 109.31153 * 297.76634 * 4 2 1
6 6 N 1.46842 * 109.52326 * 300.80524 * 5 4 2
7 7 C 1.46898 * 111.00034 * 185.83766 * 6 5 4
8 8 C 1.53012 * 109.47033 * 67.91960 * 7 6 5
9 9 C 1.52994 * 109.46866 * 180.02562 * 8 7 6
10 10 C 1.50703 * 109.46934 * 180.02562 * 9 8 7
11 11 H 1.07994 * 120.00156 * 359.97438 * 10 9 8
12 12 C 1.37881 * 119.99762 * 180.02562 * 10 9 8
13 13 N 1.31513 * 120.00423 * 359.97438 * 12 10 9
14 14 Si 1.86807 * 119.99675 * 179.97438 * 12 10 9
15 15 H 1.48504 * 109.47107 * 359.97438 * 14 12 10
16 16 H 1.48494 * 109.47229 * 119.99786 * 14 12 10
17 17 H 1.48504 * 109.46853 * 240.00056 * 14 12 10
18 18 C 1.46843 * 111.20107 * 61.73694 * 6 5 4
19 19 H 1.09006 * 109.45938 * 58.27487 * 18 6 5
20 20 C 1.52997 * 109.46335 * 178.24059 * 18 6 5
21 21 C 1.53034 * 109.52561 * 298.26256 * 18 6 5
22 22 H 1.09004 * 109.47201 * 180.15986 * 1 2 3
23 23 H 1.08998 * 109.47373 * 300.15661 * 1 2 3
24 24 H 1.08998 * 109.47717 * 60.15778 * 1 2 3
25 25 H 1.08997 * 109.50405 * 177.81195 * 4 2 1
26 26 H 1.09000 * 109.50737 * 57.72796 * 4 2 1
27 27 H 1.09003 * 109.45750 * 60.82247 * 5 4 2
28 28 H 1.09002 * 109.46065 * 180.79451 * 5 4 2
29 29 H 1.09002 * 109.47502 * 187.91781 * 7 6 5
30 30 H 1.08994 * 109.46949 * 307.92449 * 7 6 5
31 31 H 1.09002 * 109.46830 * 300.00232 * 8 7 6
32 32 H 1.08997 * 109.46447 * 60.00120 * 8 7 6
33 33 H 1.09002 * 109.47398 * 299.99655 * 9 8 7
34 34 H 1.08994 * 109.47441 * 59.99921 * 9 8 7
35 35 H 0.96995 * 119.99866 * 180.02562 * 13 12 10
36 36 H 1.09004 * 109.47265 * 52.07361 * 20 18 6
37 37 H 1.09006 * 109.47120 * 172.07051 * 20 18 6
38 38 H 1.09002 * 109.47332 * 292.07081 * 20 18 6
39 39 H 1.09004 * 109.50193 * 179.12046 * 21 18 6
40 40 H 1.09000 * 109.50247 * 299.23472 * 21 18 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8951 1.0270 0.0000
4 6 2.0416 -0.7250 -1.2478
5 6 1.5765 -2.1827 -1.2126
6 7 2.0924 -2.8333 -0.0015
7 6 1.7822 -4.2691 -0.0025
8 6 2.5814 -4.9628 -1.1077
9 6 2.2579 -6.4581 -1.1090
10 6 3.0455 -7.1414 -2.1971
11 1 3.7099 -6.5666 -2.8251
12 6 2.9169 -8.5004 -2.3915
13 7 2.1074 -9.2004 -1.6272
14 14 3.8926 -9.3473 -3.7408
15 1 4.7236 -8.3446 -4.4546
16 1 4.7719 -10.3825 -3.1406
17 1 2.9575 -9.9877 -4.7003
18 6 1.5767 -2.1843 1.2106
19 1 0.4871 -2.2178 1.2049
20 6 2.1026 -2.9189 2.4453
21 6 2.0417 -0.7268 1.2477
22 1 -0.3634 -1.0277 0.0029
23 1 -0.3634 0.5162 0.8885
24 1 -0.3634 0.5113 -0.8913
25 1 3.1309 -0.6911 -1.2675
26 1 1.6462 -0.2383 -2.1394
27 1 0.4870 -2.2161 -1.2070
28 1 1.9513 -2.7048 -2.0930
29 1 2.0487 -4.6991 0.9631
30 1 0.7164 -4.4105 -0.1815
31 1 2.3149 -4.5328 -2.0732
32 1 3.6472 -4.8213 -0.9286
33 1 2.5241 -6.8884 -0.1435
34 1 1.1921 -6.5992 -1.2882
35 1 2.0173 -10.1565 -1.7638
36 1 3.1870 -3.0090 2.3800
37 1 1.8380 -2.3582 3.3419
38 1 1.6577 -3.9128 2.4938
39 1 1.6458 -0.2411 2.1397
40 1 3.1310 -0.6928 1.2673
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000225722434.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:46:38
Heat of formation + Delta-G solvation = -28.794629 kcal
Electronic energy + Delta-G solvation = -16130.788713 eV
Core-core repulsion = 13751.115450 eV
Total energy + Delta-G solvation = -2379.673262 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 225.179 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-39.57692 -35.25400 -33.38971 -32.38212 -30.87294 -28.01765 -26.69671 -26.02515
-23.71670 -22.25450 -20.85497 -19.79213 -18.50009 -16.31409 -15.70346 -15.25519
-14.58587 -14.50747 -14.34551 -14.08158 -13.47456 -13.30520 -12.59279 -12.29768
-12.00128 -11.78310 -11.70293 -11.52199 -11.45570 -11.28495 -10.88886 -10.84906
-10.62885 -10.50805 -10.48454 -10.12163 -9.97860 -9.47348 -9.25585 -8.98292
-8.30410 -7.88498 -5.95715 -3.97354 3.33845 3.41090 3.45866 4.16972
4.50600 4.75754 4.77516 4.91186 5.19559 5.33209 5.40150 5.41541
5.46754 5.52858 5.60140 5.67903 5.77992 5.84704 5.91530 5.98075
5.98988 5.99648 6.11232 6.18279 6.24971 6.27996 6.36442 6.44238
6.49434 6.79411 6.89449 7.20902 7.52395 7.54681 7.74278 7.89720
8.05518 8.49361 9.10270 9.66477 11.15853
Molecular weight = 225.18amu
Principal moments of inertia in cm(-1)
A = 0.046061 B = 0.005187 C = 0.004909
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 607.740926 B = 5396.882996 C = 5702.753910
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C -0.094 4.094
3 H 0.066 0.934
4 C -0.111 4.111
5 C 0.052 3.948
6 N -0.533 5.533
7 C 0.051 3.949
8 C -0.103 4.103
9 C 0.021 3.979
10 C -0.516 4.516
11 H 0.055 0.945
12 C 0.055 3.945
13 N -0.897 5.897
14 Si 0.891 3.109
15 H -0.273 1.273
16 H -0.284 1.284
17 H -0.285 1.285
18 C 0.079 3.921
19 H 0.037 0.963
20 C -0.149 4.149
21 C -0.105 4.105
22 H 0.058 0.942
23 H 0.050 0.950
24 H 0.052 0.948
25 H 0.069 0.931
26 H 0.061 0.939
27 H 0.030 0.970
28 H 0.080 0.920
29 H 0.075 0.925
30 H 0.025 0.975
31 H 0.045 0.955
32 H 0.054 0.946
33 H 0.015 0.985
34 H 0.012 0.988
35 H 0.259 0.741
36 H 0.065 0.935
37 H 0.054 0.946
38 H 0.058 0.942
39 H 0.060 0.940
40 H 0.069 0.931
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.329 17.444 5.226 18.359
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.112 4.112
3 H 0.085 0.915
4 C -0.149 4.149
5 C -0.076 4.076
6 N -0.258 5.258
7 C -0.076 4.076
8 C -0.141 4.141
9 C -0.016 4.016
10 C -0.554 4.554
11 H 0.073 0.927
12 C -0.145 4.145
13 N -0.537 5.537
14 Si 0.719 3.281
15 H -0.197 1.197
16 H -0.210 1.210
17 H -0.211 1.211
18 C -0.029 4.029
19 H 0.055 0.945
20 C -0.206 4.206
21 C -0.143 4.143
22 H 0.077 0.923
23 H 0.070 0.930
24 H 0.071 0.929
25 H 0.088 0.912
26 H 0.080 0.920
27 H 0.048 0.952
28 H 0.099 0.901
29 H 0.093 0.907
30 H 0.043 0.957
31 H 0.064 0.936
32 H 0.073 0.927
33 H 0.033 0.967
34 H 0.031 0.969
35 H 0.069 0.931
36 H 0.084 0.916
37 H 0.073 0.927
38 H 0.077 0.923
39 H 0.079 0.921
40 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges -1.887 17.323 5.260 18.202
hybrid contribution -0.458 -0.720 -0.739 1.129
sum -2.345 16.602 4.521 17.366
Atomic orbital electron populations
1.21940 0.95723 1.01991 1.01172 1.21166 0.95498 0.98916 0.95661
0.91527 1.21615 1.01456 0.94936 0.96883 1.22132 0.97003 0.94423
0.94033 1.62025 1.59481 1.03291 1.00983 1.22370 0.97809 0.86043
1.01347 1.21634 0.98994 0.97888 0.95581 1.19079 0.96671 0.88832
0.97062 1.21302 1.24922 0.92852 1.16355 0.92656 1.25029 0.95525
0.97640 0.96343 1.69977 1.37527 1.07040 1.39144 0.86557 0.79988
0.79566 0.82026 1.19725 1.21032 1.21085 1.21590 0.96585 0.93881
0.90857 0.94523 1.21929 1.02382 1.00204 0.96134 1.21659 1.01425
0.94278 0.96916 0.92349 0.93044 0.92936 0.91200 0.91986 0.95187
0.90128 0.90711 0.95700 0.93623 0.92703 0.96668 0.96916 0.93146
0.91607 0.92717 0.92269 0.92100 0.91190
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.52 8.62 37.16 0.32 -1.20 16
2 C -0.09 -0.99 3.22 -90.46 -0.29 -1.28 16
3 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16
4 C -0.11 -1.31 5.59 -26.65 -0.15 -1.46 16
5 C 0.05 0.75 5.05 -3.83 -0.02 0.73 16
6 N -0.53 -8.30 4.48 -226.69 -1.01 -9.31 16
7 C 0.05 0.93 4.71 -3.82 -0.02 0.91 16
8 C -0.10 -2.22 5.13 -26.73 -0.14 -2.35 16
9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16
10 C -0.52 -14.97 9.11 -34.44 -0.31 -15.29 16
11 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16
12 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16
13 N -0.90 -27.45 13.29 55.43 0.74 -26.71 16
14 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16
15 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16
16 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16
17 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16
18 C 0.08 1.05 2.20 -67.73 -0.15 0.90 16
19 H 0.04 0.50 6.51 -51.93 -0.34 0.16 16
20 C -0.15 -1.87 8.52 37.16 0.32 -1.55 16
21 C -0.10 -1.18 4.87 -26.61 -0.13 -1.31 16
22 H 0.06 0.66 4.92 -51.93 -0.26 0.41 16
23 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16
24 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16
25 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16
26 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16
27 H 0.03 0.43 6.52 -51.93 -0.34 0.09 16
28 H 0.08 1.26 6.30 -51.93 -0.33 0.93 16
29 H 0.07 1.35 5.73 -51.93 -0.30 1.05 16
30 H 0.02 0.46 8.10 -51.93 -0.42 0.04 16
31 H 0.05 0.97 6.50 -51.93 -0.34 0.63 16
32 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16
33 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16
34 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16
35 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16
36 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16
37 H 0.05 0.57 8.13 -51.93 -0.42 0.15 16
38 H 0.06 0.79 6.55 -51.93 -0.34 0.45 16
39 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16
40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16
LS Contribution 300.96 15.07 4.54 4.54
Total: -1.00 -30.00 300.96 -8.84 -38.84
By element:
Atomic # 1 Polarization: 2.87 SS G_CDS: -7.27 Total: -4.40 kcal
Atomic # 6 Polarization: -19.16 SS G_CDS: -0.81 Total: -19.96 kcal
Atomic # 7 Polarization: -35.74 SS G_CDS: -0.28 Total: -36.02 kcal
Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal
Total LS contribution 4.54 Total: 4.54 kcal
Total: -30.00 -8.84 -38.84 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000225722434.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 10.042 kcal
(2) G-P(sol) polarization free energy of solvation -29.998 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.955 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.839 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.837 kcal
(6) G-S(sol) free energy of system = (1) + (5) -28.795 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds