Wall clock time and date at job start Mon Mar 30 2020 03:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.57340 * 2 1 4 4 C 1.53117 * 109.52025 * 239.84271 * 2 1 3 5 5 C 1.53045 * 109.31153 * 297.76634 * 4 2 1 6 6 N 1.46842 * 109.52326 * 300.80524 * 5 4 2 7 7 C 1.46898 * 111.00034 * 185.83766 * 6 5 4 8 8 C 1.53012 * 109.47033 * 67.91960 * 7 6 5 9 9 C 1.52994 * 109.46866 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.46934 * 180.02562 * 9 8 7 11 11 H 1.07994 * 120.00156 * 359.97438 * 10 9 8 12 12 C 1.37881 * 119.99762 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00423 * 359.97438 * 12 10 9 14 14 Si 1.86807 * 119.99675 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47107 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47229 * 119.99786 * 14 12 10 17 17 H 1.48504 * 109.46853 * 240.00056 * 14 12 10 18 18 C 1.46843 * 111.20107 * 61.73694 * 6 5 4 19 19 H 1.09006 * 109.45938 * 58.27487 * 18 6 5 20 20 C 1.52997 * 109.46335 * 178.24059 * 18 6 5 21 21 C 1.53034 * 109.52561 * 298.26256 * 18 6 5 22 22 H 1.09004 * 109.47201 * 180.15986 * 1 2 3 23 23 H 1.08998 * 109.47373 * 300.15661 * 1 2 3 24 24 H 1.08998 * 109.47717 * 60.15778 * 1 2 3 25 25 H 1.08997 * 109.50405 * 177.81195 * 4 2 1 26 26 H 1.09000 * 109.50737 * 57.72796 * 4 2 1 27 27 H 1.09003 * 109.45750 * 60.82247 * 5 4 2 28 28 H 1.09002 * 109.46065 * 180.79451 * 5 4 2 29 29 H 1.09002 * 109.47502 * 187.91781 * 7 6 5 30 30 H 1.08994 * 109.46949 * 307.92449 * 7 6 5 31 31 H 1.09002 * 109.46830 * 300.00232 * 8 7 6 32 32 H 1.08997 * 109.46447 * 60.00120 * 8 7 6 33 33 H 1.09002 * 109.47398 * 299.99655 * 9 8 7 34 34 H 1.08994 * 109.47441 * 59.99921 * 9 8 7 35 35 H 0.96995 * 119.99866 * 180.02562 * 13 12 10 36 36 H 1.09004 * 109.47265 * 52.07361 * 20 18 6 37 37 H 1.09006 * 109.47120 * 172.07051 * 20 18 6 38 38 H 1.09002 * 109.47332 * 292.07081 * 20 18 6 39 39 H 1.09004 * 109.50193 * 179.12046 * 21 18 6 40 40 H 1.09000 * 109.50247 * 299.23472 * 21 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8951 1.0270 0.0000 4 6 2.0416 -0.7250 -1.2478 5 6 1.5765 -2.1827 -1.2126 6 7 2.0924 -2.8333 -0.0015 7 6 1.7822 -4.2691 -0.0025 8 6 2.5814 -4.9628 -1.1077 9 6 2.2579 -6.4581 -1.1090 10 6 3.0455 -7.1414 -2.1971 11 1 3.7099 -6.5666 -2.8251 12 6 2.9169 -8.5004 -2.3915 13 7 2.1074 -9.2004 -1.6272 14 14 3.8926 -9.3473 -3.7408 15 1 4.7236 -8.3446 -4.4546 16 1 4.7719 -10.3825 -3.1406 17 1 2.9575 -9.9877 -4.7003 18 6 1.5767 -2.1843 1.2106 19 1 0.4871 -2.2178 1.2049 20 6 2.1026 -2.9189 2.4453 21 6 2.0417 -0.7268 1.2477 22 1 -0.3634 -1.0277 0.0029 23 1 -0.3634 0.5162 0.8885 24 1 -0.3634 0.5113 -0.8913 25 1 3.1309 -0.6911 -1.2675 26 1 1.6462 -0.2383 -2.1394 27 1 0.4870 -2.2161 -1.2070 28 1 1.9513 -2.7048 -2.0930 29 1 2.0487 -4.6991 0.9631 30 1 0.7164 -4.4105 -0.1815 31 1 2.3149 -4.5328 -2.0732 32 1 3.6472 -4.8213 -0.9286 33 1 2.5241 -6.8884 -0.1435 34 1 1.1921 -6.5992 -1.2882 35 1 2.0173 -10.1565 -1.7638 36 1 3.1870 -3.0090 2.3800 37 1 1.8380 -2.3582 3.3419 38 1 1.6577 -3.9128 2.4938 39 1 1.6458 -0.2411 2.1397 40 1 3.1310 -0.6928 1.2673 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000225722434.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:38 Heat of formation + Delta-G solvation = -46.137915 kcal Electronic energy + Delta-G solvation = -16131.540774 eV Core-core repulsion = 13751.115450 eV Total energy + Delta-G solvation = -2380.425324 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.66817 -36.70808 -35.16081 -33.70643 -32.54873 -29.31110 -27.77553 -27.51467 -25.19957 -23.76920 -22.04554 -21.50892 -19.46403 -18.48728 -16.96052 -16.48021 -16.39723 -15.82338 -15.48912 -15.33221 -14.75696 -14.45653 -14.22426 -13.71874 -13.54824 -13.11597 -12.96617 -12.76813 -12.70335 -12.56644 -12.45155 -12.33039 -12.20770 -11.87829 -11.62615 -11.41068 -11.39864 -11.25481 -10.95127 -10.83556 -10.55759 -9.14247 -8.20736 -6.31874 1.39402 1.39832 1.53622 2.40559 2.96639 3.12256 3.83441 3.84138 3.97569 4.11980 4.26832 4.34343 4.40901 4.46587 4.50928 4.59505 4.71962 4.77233 4.80168 4.87651 4.89101 4.97241 5.03122 5.08542 5.13364 5.18204 5.21561 5.25117 5.33535 5.35053 5.45906 5.52197 5.55548 5.73915 5.85131 6.17026 6.28638 6.34340 6.84845 7.37420 8.91543 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.046061 B = 0.005187 C = 0.004909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.740926 B = 5396.882996 C = 5702.753910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.092 4.092 3 H 0.087 0.913 4 C -0.106 4.106 5 C 0.049 3.951 6 N -0.538 5.538 7 C 0.063 3.937 8 C -0.086 4.086 9 C 0.026 3.974 10 C -0.542 4.542 11 H 0.058 0.942 12 C -0.001 4.001 13 N -0.934 5.934 14 Si 0.966 3.034 15 H -0.263 1.263 16 H -0.276 1.276 17 H -0.277 1.277 18 C 0.076 3.924 19 H 0.035 0.965 20 C -0.147 4.147 21 C -0.101 4.101 22 H 0.040 0.960 23 H 0.064 0.936 24 H 0.059 0.941 25 H 0.064 0.936 26 H 0.077 0.923 27 H 0.029 0.971 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.016 0.984 31 H 0.046 0.954 32 H 0.050 0.950 33 H -0.008 1.008 34 H -0.012 1.012 35 H 0.264 0.736 36 H 0.057 0.943 37 H 0.079 0.921 38 H 0.044 0.956 39 H 0.082 0.918 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.834 19.072 4.990 19.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.110 4.110 3 H 0.105 0.895 4 C -0.144 4.144 5 C -0.079 4.079 6 N -0.263 5.263 7 C -0.064 4.064 8 C -0.124 4.124 9 C -0.011 4.011 10 C -0.580 4.580 11 H 0.076 0.924 12 C -0.198 4.198 13 N -0.575 5.575 14 Si 0.791 3.209 15 H -0.187 1.187 16 H -0.202 1.202 17 H -0.202 1.202 18 C -0.032 4.032 19 H 0.053 0.947 20 C -0.205 4.205 21 C -0.138 4.138 22 H 0.059 0.941 23 H 0.083 0.917 24 H 0.079 0.921 25 H 0.083 0.917 26 H 0.095 0.905 27 H 0.047 0.953 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.034 0.966 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.010 0.990 34 H 0.006 0.994 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.098 0.902 38 H 0.063 0.937 39 H 0.100 0.900 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.393 18.973 5.029 19.677 hybrid contribution -0.647 -1.222 -0.635 1.521 sum -2.039 17.751 4.394 18.400 Atomic orbital electron populations 1.21911 0.95263 1.01121 1.02269 1.21188 0.95819 0.99594 0.94410 0.89508 1.21596 1.01182 0.93115 0.98515 1.22182 0.96912 0.96006 0.92783 1.62009 1.59949 1.01727 1.02600 1.22083 0.96503 0.88057 0.99797 1.21370 0.99126 0.94884 0.97065 1.18970 0.94817 0.92038 0.95315 1.21705 1.25453 0.93683 1.17126 0.92395 1.25995 0.96513 0.98405 0.98918 1.70105 1.38880 1.07586 1.40883 0.85382 0.78489 0.78385 0.78692 1.18653 1.20196 1.20249 1.21730 0.96516 0.95237 0.89728 0.94712 1.21922 1.01665 0.99853 0.97031 1.21655 1.01245 0.92671 0.98276 0.94135 0.91725 0.92146 0.91685 0.90492 0.95300 0.91963 0.90804 0.96569 0.93526 0.93132 0.98993 0.99363 0.92744 0.92391 0.90185 0.93675 0.89977 0.91578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 8.62 71.98 0.62 -1.99 16 2 C -0.09 -1.68 3.22 -10.69 -0.03 -1.72 16 3 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 4 C -0.11 -2.32 5.59 30.65 0.17 -2.15 16 5 C 0.05 1.39 5.05 86.33 0.44 1.82 16 6 N -0.54 -16.60 4.48 -871.10 -3.90 -20.50 16 7 C 0.06 2.35 4.71 86.31 0.41 2.76 16 8 C -0.09 -3.83 5.13 30.60 0.16 -3.67 16 9 C 0.03 1.45 4.97 29.85 0.15 1.60 16 10 C -0.54 -32.01 9.11 25.60 0.23 -31.78 16 11 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 12 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 13 N -0.93 -58.12 13.29 21.45 0.28 -57.84 16 14 Si 0.97 45.26 29.54 68.60 2.03 47.29 16 15 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 16 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 17 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 18 C 0.08 1.91 2.20 44.94 0.10 2.01 16 19 H 0.03 0.91 6.51 -2.38 -0.02 0.89 16 20 C -0.15 -3.54 8.52 71.98 0.61 -2.93 16 21 C -0.10 -2.00 4.87 30.67 0.15 -1.85 16 22 H 0.04 0.86 4.92 -2.38 -0.01 0.84 16 23 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 24 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.03 0.82 6.52 -2.39 -0.02 0.81 16 28 H 0.06 1.97 6.30 -2.39 -0.02 1.95 16 29 H 0.07 2.74 5.73 -2.39 -0.01 2.73 16 30 H 0.02 0.62 8.10 -2.39 -0.02 0.60 16 31 H 0.05 2.03 6.50 -2.39 -0.02 2.01 16 32 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 33 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 34 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 35 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 36 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.08 1.50 8.13 -2.38 -0.02 1.48 16 38 H 0.04 1.19 6.55 -2.39 -0.02 1.18 16 39 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -64.61 300.96 2.85 -61.76 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: 0.97 Total: 6.76 kcal Atomic # 6 Polarization: -40.94 SS G_CDS: 3.46 Total: -37.47 kcal Atomic # 7 Polarization: -74.72 SS G_CDS: -3.61 Total: -78.33 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -64.61 2.85 -61.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225722434.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.627 kcal (2) G-P(sol) polarization free energy of solvation -64.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds