Wall clock time and date at job start Mon Mar 30 2020 03:46:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.08999 * 109.57340 * 2 1
4 4 C 1.53117 * 109.52025 * 239.84271 * 2 1 3
5 5 C 1.53045 * 109.31153 * 297.76634 * 4 2 1
6 6 N 1.46842 * 109.52326 * 300.80524 * 5 4 2
7 7 C 1.46898 * 111.00034 * 185.83766 * 6 5 4
8 8 C 1.53012 * 109.47033 * 67.91960 * 7 6 5
9 9 C 1.52994 * 109.46866 * 180.02562 * 8 7 6
10 10 C 1.50703 * 109.46934 * 180.02562 * 9 8 7
11 11 H 1.07994 * 120.00156 * 359.97438 * 10 9 8
12 12 C 1.37881 * 119.99762 * 180.02562 * 10 9 8
13 13 N 1.31513 * 120.00423 * 359.97438 * 12 10 9
14 14 Si 1.86807 * 119.99675 * 179.97438 * 12 10 9
15 15 H 1.48504 * 109.47107 * 359.97438 * 14 12 10
16 16 H 1.48494 * 109.47229 * 119.99786 * 14 12 10
17 17 H 1.48504 * 109.46853 * 240.00056 * 14 12 10
18 18 C 1.46843 * 111.20107 * 61.73694 * 6 5 4
19 19 H 1.09006 * 109.45938 * 58.27487 * 18 6 5
20 20 C 1.52997 * 109.46335 * 178.24059 * 18 6 5
21 21 C 1.53034 * 109.52561 * 298.26256 * 18 6 5
22 22 H 1.09004 * 109.47201 * 180.15986 * 1 2 3
23 23 H 1.08998 * 109.47373 * 300.15661 * 1 2 3
24 24 H 1.08998 * 109.47717 * 60.15778 * 1 2 3
25 25 H 1.08997 * 109.50405 * 177.81195 * 4 2 1
26 26 H 1.09000 * 109.50737 * 57.72796 * 4 2 1
27 27 H 1.09003 * 109.45750 * 60.82247 * 5 4 2
28 28 H 1.09002 * 109.46065 * 180.79451 * 5 4 2
29 29 H 1.09002 * 109.47502 * 187.91781 * 7 6 5
30 30 H 1.08994 * 109.46949 * 307.92449 * 7 6 5
31 31 H 1.09002 * 109.46830 * 300.00232 * 8 7 6
32 32 H 1.08997 * 109.46447 * 60.00120 * 8 7 6
33 33 H 1.09002 * 109.47398 * 299.99655 * 9 8 7
34 34 H 1.08994 * 109.47441 * 59.99921 * 9 8 7
35 35 H 0.96995 * 119.99866 * 180.02562 * 13 12 10
36 36 H 1.09004 * 109.47265 * 52.07361 * 20 18 6
37 37 H 1.09006 * 109.47120 * 172.07051 * 20 18 6
38 38 H 1.09002 * 109.47332 * 292.07081 * 20 18 6
39 39 H 1.09004 * 109.50193 * 179.12046 * 21 18 6
40 40 H 1.09000 * 109.50247 * 299.23472 * 21 18 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8951 1.0270 0.0000
4 6 2.0416 -0.7250 -1.2478
5 6 1.5765 -2.1827 -1.2126
6 7 2.0924 -2.8333 -0.0015
7 6 1.7822 -4.2691 -0.0025
8 6 2.5814 -4.9628 -1.1077
9 6 2.2579 -6.4581 -1.1090
10 6 3.0455 -7.1414 -2.1971
11 1 3.7099 -6.5666 -2.8251
12 6 2.9169 -8.5004 -2.3915
13 7 2.1074 -9.2004 -1.6272
14 14 3.8926 -9.3473 -3.7408
15 1 4.7236 -8.3446 -4.4546
16 1 4.7719 -10.3825 -3.1406
17 1 2.9575 -9.9877 -4.7003
18 6 1.5767 -2.1843 1.2106
19 1 0.4871 -2.2178 1.2049
20 6 2.1026 -2.9189 2.4453
21 6 2.0417 -0.7268 1.2477
22 1 -0.3634 -1.0277 0.0029
23 1 -0.3634 0.5162 0.8885
24 1 -0.3634 0.5113 -0.8913
25 1 3.1309 -0.6911 -1.2675
26 1 1.6462 -0.2383 -2.1394
27 1 0.4870 -2.2161 -1.2070
28 1 1.9513 -2.7048 -2.0930
29 1 2.0487 -4.6991 0.9631
30 1 0.7164 -4.4105 -0.1815
31 1 2.3149 -4.5328 -2.0732
32 1 3.6472 -4.8213 -0.9286
33 1 2.5241 -6.8884 -0.1435
34 1 1.1921 -6.5992 -1.2882
35 1 2.0173 -10.1565 -1.7638
36 1 3.1870 -3.0090 2.3800
37 1 1.8380 -2.3582 3.3419
38 1 1.6577 -3.9128 2.4938
39 1 1.6458 -0.2411 2.1397
40 1 3.1310 -0.6928 1.2673
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000225722434.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:46:38
Heat of formation + Delta-G solvation = -46.137915 kcal
Electronic energy + Delta-G solvation = -16131.540774 eV
Core-core repulsion = 13751.115450 eV
Total energy + Delta-G solvation = -2380.425324 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 225.179 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-40.66817 -36.70808 -35.16081 -33.70643 -32.54873 -29.31110 -27.77553 -27.51467
-25.19957 -23.76920 -22.04554 -21.50892 -19.46403 -18.48728 -16.96052 -16.48021
-16.39723 -15.82338 -15.48912 -15.33221 -14.75696 -14.45653 -14.22426 -13.71874
-13.54824 -13.11597 -12.96617 -12.76813 -12.70335 -12.56644 -12.45155 -12.33039
-12.20770 -11.87829 -11.62615 -11.41068 -11.39864 -11.25481 -10.95127 -10.83556
-10.55759 -9.14247 -8.20736 -6.31874 1.39402 1.39832 1.53622 2.40559
2.96639 3.12256 3.83441 3.84138 3.97569 4.11980 4.26832 4.34343
4.40901 4.46587 4.50928 4.59505 4.71962 4.77233 4.80168 4.87651
4.89101 4.97241 5.03122 5.08542 5.13364 5.18204 5.21561 5.25117
5.33535 5.35053 5.45906 5.52197 5.55548 5.73915 5.85131 6.17026
6.28638 6.34340 6.84845 7.37420 8.91543
Molecular weight = 225.18amu
Principal moments of inertia in cm(-1)
A = 0.046061 B = 0.005187 C = 0.004909
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 607.740926 B = 5396.882996 C = 5702.753910
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.092 4.092
3 H 0.087 0.913
4 C -0.106 4.106
5 C 0.049 3.951
6 N -0.538 5.538
7 C 0.063 3.937
8 C -0.086 4.086
9 C 0.026 3.974
10 C -0.542 4.542
11 H 0.058 0.942
12 C -0.001 4.001
13 N -0.934 5.934
14 Si 0.966 3.034
15 H -0.263 1.263
16 H -0.276 1.276
17 H -0.277 1.277
18 C 0.076 3.924
19 H 0.035 0.965
20 C -0.147 4.147
21 C -0.101 4.101
22 H 0.040 0.960
23 H 0.064 0.936
24 H 0.059 0.941
25 H 0.064 0.936
26 H 0.077 0.923
27 H 0.029 0.971
28 H 0.062 0.938
29 H 0.074 0.926
30 H 0.016 0.984
31 H 0.046 0.954
32 H 0.050 0.950
33 H -0.008 1.008
34 H -0.012 1.012
35 H 0.264 0.736
36 H 0.057 0.943
37 H 0.079 0.921
38 H 0.044 0.956
39 H 0.082 0.918
40 H 0.065 0.935
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.834 19.072 4.990 19.799
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.110 4.110
3 H 0.105 0.895
4 C -0.144 4.144
5 C -0.079 4.079
6 N -0.263 5.263
7 C -0.064 4.064
8 C -0.124 4.124
9 C -0.011 4.011
10 C -0.580 4.580
11 H 0.076 0.924
12 C -0.198 4.198
13 N -0.575 5.575
14 Si 0.791 3.209
15 H -0.187 1.187
16 H -0.202 1.202
17 H -0.202 1.202
18 C -0.032 4.032
19 H 0.053 0.947
20 C -0.205 4.205
21 C -0.138 4.138
22 H 0.059 0.941
23 H 0.083 0.917
24 H 0.079 0.921
25 H 0.083 0.917
26 H 0.095 0.905
27 H 0.047 0.953
28 H 0.080 0.920
29 H 0.092 0.908
30 H 0.034 0.966
31 H 0.065 0.935
32 H 0.069 0.931
33 H 0.010 0.990
34 H 0.006 0.994
35 H 0.073 0.927
36 H 0.076 0.924
37 H 0.098 0.902
38 H 0.063 0.937
39 H 0.100 0.900
40 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges -1.393 18.973 5.029 19.677
hybrid contribution -0.647 -1.222 -0.635 1.521
sum -2.039 17.751 4.394 18.400
Atomic orbital electron populations
1.21911 0.95263 1.01121 1.02269 1.21188 0.95819 0.99594 0.94410
0.89508 1.21596 1.01182 0.93115 0.98515 1.22182 0.96912 0.96006
0.92783 1.62009 1.59949 1.01727 1.02600 1.22083 0.96503 0.88057
0.99797 1.21370 0.99126 0.94884 0.97065 1.18970 0.94817 0.92038
0.95315 1.21705 1.25453 0.93683 1.17126 0.92395 1.25995 0.96513
0.98405 0.98918 1.70105 1.38880 1.07586 1.40883 0.85382 0.78489
0.78385 0.78692 1.18653 1.20196 1.20249 1.21730 0.96516 0.95237
0.89728 0.94712 1.21922 1.01665 0.99853 0.97031 1.21655 1.01245
0.92671 0.98276 0.94135 0.91725 0.92146 0.91685 0.90492 0.95300
0.91963 0.90804 0.96569 0.93526 0.93132 0.98993 0.99363 0.92744
0.92391 0.90185 0.93675 0.89977 0.91578
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.61 8.62 71.98 0.62 -1.99 16
2 C -0.09 -1.68 3.22 -10.69 -0.03 -1.72 16
3 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16
4 C -0.11 -2.32 5.59 30.65 0.17 -2.15 16
5 C 0.05 1.39 5.05 86.33 0.44 1.82 16
6 N -0.54 -16.60 4.48 -871.10 -3.90 -20.50 16
7 C 0.06 2.35 4.71 86.31 0.41 2.76 16
8 C -0.09 -3.83 5.13 30.60 0.16 -3.67 16
9 C 0.03 1.45 4.97 29.85 0.15 1.60 16
10 C -0.54 -32.01 9.11 25.60 0.23 -31.78 16
11 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16
12 C 0.00 -0.05 5.46 84.66 0.46 0.41 16
13 N -0.93 -58.12 13.29 21.45 0.28 -57.84 16
14 Si 0.97 45.26 29.54 68.60 2.03 47.29 16
15 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16
16 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16
17 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16
18 C 0.08 1.91 2.20 44.94 0.10 2.01 16
19 H 0.03 0.91 6.51 -2.38 -0.02 0.89 16
20 C -0.15 -3.54 8.52 71.98 0.61 -2.93 16
21 C -0.10 -2.00 4.87 30.67 0.15 -1.85 16
22 H 0.04 0.86 4.92 -2.38 -0.01 0.84 16
23 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16
24 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16
25 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16
26 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16
27 H 0.03 0.82 6.52 -2.39 -0.02 0.81 16
28 H 0.06 1.97 6.30 -2.39 -0.02 1.95 16
29 H 0.07 2.74 5.73 -2.39 -0.01 2.73 16
30 H 0.02 0.62 8.10 -2.39 -0.02 0.60 16
31 H 0.05 2.03 6.50 -2.39 -0.02 2.01 16
32 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16
33 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16
34 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16
35 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16
36 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16
37 H 0.08 1.50 8.13 -2.38 -0.02 1.48 16
38 H 0.04 1.19 6.55 -2.39 -0.02 1.18 16
39 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16
40 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16
Total: -1.00 -64.61 300.96 2.85 -61.76
By element:
Atomic # 1 Polarization: 5.78 SS G_CDS: 0.97 Total: 6.76 kcal
Atomic # 6 Polarization: -40.94 SS G_CDS: 3.46 Total: -37.47 kcal
Atomic # 7 Polarization: -74.72 SS G_CDS: -3.61 Total: -78.33 kcal
Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal
Total: -64.61 2.85 -61.76 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000225722434.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 15.627 kcal
(2) G-P(sol) polarization free energy of solvation -64.612 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.986 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.848 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.765 kcal
(6) G-S(sol) free energy of system = (1) + (5) -46.138 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds