Wall clock time and date at job start Mon Mar 30 2020 03:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 109.47388 * 2 1 4 4 C 1.52996 * 109.47144 * 119.99809 * 2 1 3 5 5 C 1.53003 * 109.47027 * 179.97438 * 4 2 1 6 6 C 1.53003 * 109.47302 * 300.00159 * 5 4 2 7 7 H 1.09000 * 109.46837 * 180.02562 * 6 5 4 8 8 N 1.46901 * 109.47021 * 300.00274 * 6 5 4 9 9 C 1.46905 * 110.99870 * 274.99736 * 8 6 5 10 10 C 1.52993 * 109.47039 * 180.02562 * 9 8 6 11 11 C 1.50698 * 109.47393 * 180.02562 * 10 9 8 12 12 H 1.08010 * 119.99765 * 359.97438 * 11 10 9 13 13 C 1.37872 * 120.00736 * 179.97438 * 11 10 9 14 14 N 1.31523 * 119.99548 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 120.00627 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47183 * 59.99833 * 15 13 11 17 17 H 1.48504 * 109.47670 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.47006 * 300.00098 * 15 13 11 19 19 C 1.53000 * 109.46931 * 60.00174 * 6 5 4 20 20 H 1.08993 * 109.47185 * 59.99995 * 19 6 5 21 21 C 1.52997 * 109.47012 * 180.02562 * 19 6 5 22 22 C 1.52997 * 109.47276 * 240.00299 * 2 1 3 23 23 H 1.08993 * 109.47115 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47185 * 300.00189 * 1 2 3 25 25 H 1.09002 * 109.47252 * 59.99453 * 1 2 3 26 26 H 1.09001 * 109.47486 * 299.99949 * 4 2 1 27 27 H 1.09002 * 109.46901 * 60.00355 * 4 2 1 28 28 H 1.09007 * 109.47206 * 180.02562 * 5 4 2 29 29 H 1.08993 * 109.47138 * 60.00363 * 5 4 2 30 30 H 1.00901 * 111.00067 * 38.94911 * 8 6 5 31 31 H 1.09001 * 109.46798 * 300.00327 * 9 8 6 32 32 H 1.08998 * 109.46961 * 60.00043 * 9 8 6 33 33 H 1.09001 * 109.47393 * 299.99719 * 10 9 8 34 34 H 1.08998 * 109.47408 * 60.00073 * 10 9 8 35 35 H 0.97002 * 119.99722 * 180.02562 * 14 13 11 36 36 H 1.09002 * 109.47559 * 59.99679 * 21 19 6 37 37 H 1.08998 * 109.47336 * 180.02562 * 21 19 6 38 38 H 1.09009 * 109.46669 * 299.99651 * 21 19 6 39 39 H 1.08998 * 109.47168 * 59.99648 * 22 2 1 40 40 H 1.09002 * 109.47046 * 299.99814 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 3.5700 -0.7217 1.2489 6 6 4.0795 -1.4434 -0.0004 7 1 5.1695 -1.4441 -0.0003 8 7 3.5893 -2.8282 -0.0001 9 6 4.4728 -3.6992 0.7865 10 6 3.9313 -5.1299 0.7629 11 6 4.8373 -6.0234 1.5703 12 1 5.7122 -5.6119 2.0518 13 6 4.5495 -7.3660 1.6944 14 7 3.4839 -7.8670 1.1085 15 14 5.6729 -8.4736 2.6946 16 1 5.7272 -7.9873 4.0966 17 1 5.1473 -9.8623 2.6718 18 1 7.0379 -8.4519 2.1099 19 6 3.5695 -0.7221 -1.2496 20 1 3.9332 0.3054 -1.2498 21 6 4.0784 -1.4440 -2.4988 22 6 2.0400 -0.7212 -1.2492 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3634 0.5139 -0.8899 26 1 1.6766 -0.2074 2.1392 27 1 1.6766 -1.7489 1.2492 28 1 3.9333 -1.2360 2.1387 29 1 3.9336 0.3057 1.2487 30 1 2.6399 -2.8756 0.3385 31 1 5.4747 -3.6831 0.3574 32 1 4.5126 -3.3423 1.8156 33 1 2.9293 -5.1463 1.1917 34 1 3.8919 -5.4866 -0.2663 35 1 3.2811 -8.8115 1.1961 36 1 3.7144 -2.4715 -2.4984 37 1 3.7155 -0.9300 -3.3888 38 1 5.1685 -1.4447 -2.4992 39 1 1.6766 -0.2073 -2.1392 40 1 1.6767 -1.7489 -1.2493 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226178253.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:25 Heat of formation + Delta-G solvation = -42.086002 kcal Electronic energy + Delta-G solvation = -16222.880236 eV Core-core repulsion = 13842.630616 eV Total energy + Delta-G solvation = -2380.249620 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.48014 -35.06514 -33.26409 -32.46267 -30.93424 -28.36222 -26.43573 -25.50681 -23.81444 -21.77650 -20.79849 -20.14420 -18.71641 -16.23650 -15.73779 -14.93959 -14.52071 -14.40618 -13.95483 -13.78921 -13.61396 -12.82395 -12.64910 -12.29544 -12.07409 -12.03635 -11.63519 -11.51847 -11.24760 -11.09688 -10.97391 -10.88853 -10.62804 -10.49909 -10.26434 -10.04174 -9.86202 -9.80072 -9.26361 -9.11009 -8.32098 -7.64323 -5.96903 -3.99253 3.34996 3.39259 3.41711 4.46325 4.73099 4.80194 4.85023 4.99140 5.26642 5.29854 5.38922 5.49158 5.52019 5.59017 5.66335 5.75190 5.79408 5.88820 6.01836 6.06595 6.09917 6.13444 6.17040 6.26516 6.33053 6.40949 6.48648 6.49484 6.58802 6.62992 6.82215 7.04971 7.58853 7.79349 7.89189 8.06276 8.15046 8.48054 9.08032 9.64292 11.14519 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.037216 B = 0.005622 C = 0.005440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.183399 B = 4978.904067 C = 5145.684689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.091 4.091 3 H 0.063 0.937 4 C -0.115 4.115 5 C -0.150 4.150 6 C 0.090 3.910 7 H 0.071 0.929 8 N -0.681 5.681 9 C 0.066 3.934 10 C 0.026 3.974 11 C -0.521 4.521 12 H 0.053 0.947 13 C 0.058 3.942 14 N -0.894 5.894 15 Si 0.892 3.108 16 H -0.278 1.278 17 H -0.287 1.287 18 H -0.277 1.277 19 C -0.076 4.076 20 H 0.059 0.941 21 C -0.138 4.138 22 C -0.108 4.108 23 H 0.056 0.944 24 H 0.050 0.950 25 H 0.051 0.949 26 H 0.057 0.943 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.336 0.664 31 H 0.055 0.945 32 H 0.013 0.987 33 H 0.012 0.988 34 H 0.024 0.976 35 H 0.261 0.739 36 H 0.073 0.927 37 H 0.040 0.960 38 H 0.045 0.955 39 H 0.054 0.946 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.138 16.146 -3.024 16.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.109 4.109 3 H 0.082 0.918 4 C -0.153 4.153 5 C -0.189 4.189 6 C -0.021 4.021 7 H 0.089 0.911 8 N -0.313 5.313 9 C -0.062 4.062 10 C -0.011 4.011 11 C -0.560 4.560 12 H 0.071 0.929 13 C -0.143 4.143 14 N -0.533 5.533 15 Si 0.720 3.280 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.095 4.095 20 H 0.077 0.923 21 C -0.195 4.195 22 C -0.146 4.146 23 H 0.075 0.925 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.156 0.844 31 H 0.074 0.926 32 H 0.031 0.969 33 H 0.030 0.970 34 H 0.043 0.957 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.059 0.941 38 H 0.064 0.936 39 H 0.073 0.927 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.938 15.800 -3.655 16.482 hybrid contribution 0.399 -0.386 1.568 1.663 sum -2.540 15.414 -2.087 15.761 Atomic orbital electron populations 1.21831 0.95593 1.01954 1.01086 1.21124 0.95086 0.99239 0.95453 0.91843 1.21580 0.95532 1.00884 0.97280 1.22194 0.96079 1.00901 0.99721 1.21545 0.98762 0.89113 0.92691 0.91123 1.60734 1.06241 1.05832 1.58521 1.22155 0.95902 0.95098 0.93069 1.19046 0.95927 0.88533 0.97617 1.21155 1.09904 0.93384 1.31539 0.92901 1.24995 0.95321 0.98166 0.95847 1.69969 1.26057 1.13436 1.43865 0.86662 0.81032 0.79664 0.80643 1.20334 1.21279 1.20245 1.21057 0.95293 0.97883 0.95269 0.92283 1.21696 1.00221 1.02004 0.95603 1.21613 0.95320 1.01254 0.96397 0.92466 0.93105 0.92993 0.92399 0.91590 0.92001 0.92207 0.84430 0.92601 0.96876 0.97004 0.95738 0.92984 0.90766 0.94125 0.93552 0.92714 0.90872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.19 37.15 0.34 -1.14 16 2 C -0.09 -1.00 2.72 -90.63 -0.25 -1.25 16 3 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 4 C -0.12 -1.42 4.95 -26.73 -0.13 -1.55 16 5 C -0.15 -1.98 5.52 -26.73 -0.15 -2.12 16 6 C 0.09 1.31 2.30 -67.71 -0.16 1.15 16 7 H 0.07 1.08 7.80 -51.93 -0.40 0.68 16 8 N -0.68 -12.04 5.00 -106.72 -0.53 -12.57 16 9 C 0.07 1.40 5.42 -3.82 -0.02 1.38 16 10 C 0.03 0.69 5.23 -27.89 -0.15 0.54 16 11 C -0.52 -14.98 9.11 -34.44 -0.31 -15.29 16 12 H 0.05 1.47 7.74 -52.48 -0.41 1.07 16 13 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 14 N -0.89 -27.22 13.29 55.43 0.74 -26.49 16 15 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 17 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 C -0.08 -0.97 2.54 -90.65 -0.23 -1.20 16 20 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 21 C -0.14 -1.84 9.03 37.16 0.34 -1.50 16 22 C -0.11 -1.31 4.24 -26.76 -0.11 -1.42 16 23 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.91 6.26 -51.93 -0.32 0.58 16 28 H 0.06 0.89 7.45 -51.92 -0.39 0.51 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.34 5.90 5.56 -39.29 -0.22 5.68 16 31 H 0.06 1.20 8.05 -51.93 -0.42 0.78 16 32 H 0.01 0.28 7.43 -51.93 -0.39 -0.11 16 33 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 36 H 0.07 1.15 7.60 -51.93 -0.39 0.75 16 37 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 39 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.07 1.00 7.21 -51.93 -0.37 0.63 16 LS Contribution 305.99 15.07 4.61 4.61 Total: -1.00 -29.19 305.99 -8.66 -37.84 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -7.52 Total: 0.54 kcal Atomic # 6 Polarization: -19.89 SS G_CDS: -0.93 Total: -20.81 kcal Atomic # 7 Polarization: -39.26 SS G_CDS: 0.20 Total: -39.06 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.19 -8.66 -37.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226178253.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.244 kcal (2) G-P(sol) polarization free energy of solvation -29.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds