Wall clock time and date at job start Mon Mar 30 2020 03:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 109.47388 * 2 1 4 4 C 1.52996 * 109.47144 * 119.99809 * 2 1 3 5 5 C 1.53003 * 109.47027 * 179.97438 * 4 2 1 6 6 C 1.53003 * 109.47302 * 300.00159 * 5 4 2 7 7 H 1.09000 * 109.46837 * 180.02562 * 6 5 4 8 8 N 1.46901 * 109.47021 * 300.00274 * 6 5 4 9 9 C 1.46905 * 110.99870 * 274.99736 * 8 6 5 10 10 C 1.52993 * 109.47039 * 180.02562 * 9 8 6 11 11 C 1.50698 * 109.47393 * 180.02562 * 10 9 8 12 12 H 1.08010 * 119.99765 * 359.97438 * 11 10 9 13 13 C 1.37872 * 120.00736 * 179.97438 * 11 10 9 14 14 N 1.31523 * 119.99548 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 120.00627 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47183 * 59.99833 * 15 13 11 17 17 H 1.48504 * 109.47670 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.47006 * 300.00098 * 15 13 11 19 19 C 1.53000 * 109.46931 * 60.00174 * 6 5 4 20 20 H 1.08993 * 109.47185 * 59.99995 * 19 6 5 21 21 C 1.52997 * 109.47012 * 180.02562 * 19 6 5 22 22 C 1.52997 * 109.47276 * 240.00299 * 2 1 3 23 23 H 1.08993 * 109.47115 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47185 * 300.00189 * 1 2 3 25 25 H 1.09002 * 109.47252 * 59.99453 * 1 2 3 26 26 H 1.09001 * 109.47486 * 299.99949 * 4 2 1 27 27 H 1.09002 * 109.46901 * 60.00355 * 4 2 1 28 28 H 1.09007 * 109.47206 * 180.02562 * 5 4 2 29 29 H 1.08993 * 109.47138 * 60.00363 * 5 4 2 30 30 H 1.00901 * 111.00067 * 38.94911 * 8 6 5 31 31 H 1.09001 * 109.46798 * 300.00327 * 9 8 6 32 32 H 1.08998 * 109.46961 * 60.00043 * 9 8 6 33 33 H 1.09001 * 109.47393 * 299.99719 * 10 9 8 34 34 H 1.08998 * 109.47408 * 60.00073 * 10 9 8 35 35 H 0.97002 * 119.99722 * 180.02562 * 14 13 11 36 36 H 1.09002 * 109.47559 * 59.99679 * 21 19 6 37 37 H 1.08998 * 109.47336 * 180.02562 * 21 19 6 38 38 H 1.09009 * 109.46669 * 299.99651 * 21 19 6 39 39 H 1.08998 * 109.47168 * 59.99648 * 22 2 1 40 40 H 1.09002 * 109.47046 * 299.99814 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 3.5700 -0.7217 1.2489 6 6 4.0795 -1.4434 -0.0004 7 1 5.1695 -1.4441 -0.0003 8 7 3.5893 -2.8282 -0.0001 9 6 4.4728 -3.6992 0.7865 10 6 3.9313 -5.1299 0.7629 11 6 4.8373 -6.0234 1.5703 12 1 5.7122 -5.6119 2.0518 13 6 4.5495 -7.3660 1.6944 14 7 3.4839 -7.8670 1.1085 15 14 5.6729 -8.4736 2.6946 16 1 5.7272 -7.9873 4.0966 17 1 5.1473 -9.8623 2.6718 18 1 7.0379 -8.4519 2.1099 19 6 3.5695 -0.7221 -1.2496 20 1 3.9332 0.3054 -1.2498 21 6 4.0784 -1.4440 -2.4988 22 6 2.0400 -0.7212 -1.2492 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3634 0.5139 -0.8899 26 1 1.6766 -0.2074 2.1392 27 1 1.6766 -1.7489 1.2492 28 1 3.9333 -1.2360 2.1387 29 1 3.9336 0.3057 1.2487 30 1 2.6399 -2.8756 0.3385 31 1 5.4747 -3.6831 0.3574 32 1 4.5126 -3.3423 1.8156 33 1 2.9293 -5.1463 1.1917 34 1 3.8919 -5.4866 -0.2663 35 1 3.2811 -8.8115 1.1961 36 1 3.7144 -2.4715 -2.4984 37 1 3.7155 -0.9300 -3.3888 38 1 5.1685 -1.4447 -2.4992 39 1 1.6766 -0.2073 -2.1392 40 1 1.6767 -1.7489 -1.2493 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226178253.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:24 Heat of formation + Delta-G solvation = -58.299826 kcal Electronic energy + Delta-G solvation = -16223.583320 eV Core-core repulsion = 13842.630616 eV Total energy + Delta-G solvation = -2380.952704 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.59595 -36.59423 -34.96876 -33.82897 -32.34533 -30.07691 -27.39979 -26.84157 -25.62119 -22.94426 -22.44440 -21.30906 -19.86099 -18.43240 -17.04421 -16.46567 -16.09517 -15.75853 -15.15924 -14.87209 -14.71332 -14.41778 -14.33850 -13.70630 -13.28313 -13.13363 -13.02366 -12.87269 -12.61835 -12.55163 -12.49940 -12.32959 -12.07705 -11.82981 -11.67280 -11.42554 -11.27999 -11.14828 -10.90453 -10.78232 -10.56071 -9.10632 -8.20464 -6.32206 1.39356 1.42852 1.50825 2.40246 3.12687 3.44942 3.80727 3.82853 3.89340 4.26075 4.26717 4.45946 4.49428 4.51920 4.60527 4.64205 4.71700 4.79450 4.88982 4.93740 5.01394 5.06973 5.10450 5.13848 5.14904 5.21895 5.30121 5.33661 5.44387 5.48913 5.53498 5.59708 5.69716 5.72916 5.82197 6.17925 6.37419 6.63799 6.85251 7.37076 8.91554 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.037216 B = 0.005622 C = 0.005440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.183399 B = 4978.904067 C = 5145.684689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 H 0.080 0.920 4 C -0.114 4.114 5 C -0.145 4.145 6 C 0.087 3.913 7 H 0.064 0.936 8 N -0.683 5.683 9 C 0.086 3.914 10 C 0.034 3.966 11 C -0.546 4.546 12 H 0.059 0.941 13 C 0.001 3.999 14 N -0.932 5.932 15 Si 0.967 3.033 16 H -0.267 1.267 17 H -0.282 1.282 18 H -0.267 1.267 19 C -0.071 4.071 20 H 0.082 0.918 21 C -0.136 4.136 22 C -0.106 4.106 23 H 0.044 0.956 24 H 0.059 0.941 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.044 0.956 28 H 0.045 0.955 29 H 0.082 0.918 30 H 0.336 0.664 31 H 0.053 0.947 32 H 0.014 0.986 33 H -0.012 1.012 34 H -0.007 1.007 35 H 0.264 0.736 36 H 0.045 0.955 37 H 0.059 0.941 38 H 0.044 0.956 39 H 0.070 0.930 40 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.558 17.772 -2.612 18.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.103 4.103 3 H 0.098 0.902 4 C -0.152 4.152 5 C -0.184 4.184 6 C -0.023 4.023 7 H 0.083 0.917 8 N -0.316 5.316 9 C -0.043 4.043 10 C -0.003 4.003 11 C -0.584 4.584 12 H 0.077 0.923 13 C -0.197 4.197 14 N -0.572 5.572 15 Si 0.791 3.209 16 H -0.191 1.191 17 H -0.207 1.207 18 H -0.192 1.192 19 C -0.090 4.090 20 H 0.100 0.900 21 C -0.193 4.193 22 C -0.144 4.144 23 H 0.063 0.937 24 H 0.078 0.922 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.101 0.899 30 H 0.156 0.844 31 H 0.071 0.929 32 H 0.032 0.968 33 H 0.006 0.994 34 H 0.011 0.989 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.063 0.937 39 H 0.088 0.912 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.356 17.450 -3.246 17.905 hybrid contribution 0.186 -0.868 1.395 1.654 sum -2.171 16.582 -1.851 16.826 Atomic orbital electron populations 1.21815 0.94831 1.01508 1.02162 1.21093 0.95710 0.99550 0.93958 0.90191 1.21579 0.94892 1.00015 0.98724 1.22134 0.96644 1.01653 0.97945 1.21664 0.98488 0.87446 0.94741 0.91747 1.60663 1.05698 1.07631 1.57575 1.21744 0.95945 0.92902 0.93663 1.18888 0.94731 0.91617 0.95080 1.21591 1.10471 0.94338 1.32018 0.92301 1.25978 0.96899 0.99886 0.96917 1.70110 1.27910 1.13992 1.45185 0.85476 0.78924 0.77324 0.79157 1.19146 1.20701 1.19165 1.21053 0.95787 0.98519 0.93643 0.89955 1.21663 1.00097 1.00639 0.96927 1.21588 0.94728 1.00298 0.97748 0.93707 0.92170 0.91804 0.91173 0.93764 0.93646 0.89922 0.84426 0.92867 0.96791 0.99412 0.98899 0.92738 0.93619 0.92208 0.93716 0.91175 0.93202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 9.19 71.98 0.66 -1.99 16 2 C -0.08 -1.68 2.72 -10.80 -0.03 -1.71 16 3 H 0.08 1.38 8.14 -2.38 -0.02 1.37 16 4 C -0.11 -2.66 4.95 30.59 0.15 -2.51 16 5 C -0.14 -3.60 5.52 30.60 0.17 -3.43 16 6 C 0.09 2.46 2.30 44.92 0.10 2.56 16 7 H 0.06 1.91 7.80 -2.39 -0.02 1.90 16 8 N -0.68 -24.71 5.00 -491.56 -2.46 -27.17 16 9 C 0.09 3.77 5.42 86.30 0.47 4.24 16 10 C 0.03 1.89 5.23 29.85 0.16 2.04 16 11 C -0.55 -31.96 9.11 25.60 0.23 -31.72 16 12 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 13 C 0.00 0.07 5.46 84.65 0.46 0.53 16 14 N -0.93 -57.97 13.29 21.45 0.28 -57.68 16 15 Si 0.97 44.97 29.54 68.60 2.03 46.99 16 16 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 17 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 18 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 19 C -0.07 -1.68 2.54 -10.81 -0.03 -1.71 16 20 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 21 C -0.14 -3.48 9.03 71.98 0.65 -2.83 16 22 C -0.11 -2.38 4.24 30.58 0.13 -2.25 16 23 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.04 1.22 6.26 -2.39 -0.01 1.21 16 28 H 0.04 1.27 7.45 -2.38 -0.02 1.26 16 29 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.34 12.24 5.56 -89.69 -0.50 11.74 16 31 H 0.05 2.33 8.05 -2.39 -0.02 2.31 16 32 H 0.01 0.60 7.43 -2.39 -0.02 0.58 16 33 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 34 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 35 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 36 H 0.04 1.42 7.60 -2.39 -0.02 1.41 16 37 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.04 1.13 8.14 -2.38 -0.02 1.12 16 39 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.05 1.36 7.21 -2.39 -0.02 1.34 16 Total: -1.00 -63.40 305.99 3.45 -59.94 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: 0.47 Total: 16.70 kcal Atomic # 6 Polarization: -41.91 SS G_CDS: 3.13 Total: -38.78 kcal Atomic # 7 Polarization: -82.68 SS G_CDS: -2.17 Total: -84.85 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 46.99 kcal Total: -63.40 3.45 -59.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226178253.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.643 kcal (2) G-P(sol) polarization free energy of solvation -63.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds