Wall clock time and date at job start Mon Mar 30 2020 03:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47643 * 2 1 4 4 C 1.50706 * 109.47093 * 120.00092 * 2 1 3 5 5 H 1.07991 * 120.00260 * 119.99230 * 4 2 1 6 6 C 1.37880 * 119.99853 * 299.99843 * 4 2 1 7 7 N 1.31515 * 119.99852 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00254 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.47077 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47550 * 119.99905 * 8 6 4 11 11 H 1.48501 * 109.47653 * 240.00180 * 8 6 4 12 12 N 1.46897 * 109.46970 * 239.99661 * 2 1 3 13 13 C 1.46901 * 111.00145 * 85.73039 * 12 2 1 14 14 H 1.09003 * 108.76697 * 327.87553 * 13 12 2 15 15 C 1.54066 * 108.87850 * 209.36386 * 13 12 2 16 16 C 1.54068 * 112.81732 * 197.50324 * 15 13 12 17 17 C 1.50476 * 112.49569 * 318.28148 * 16 15 13 18 18 C 1.54241 * 108.52118 * 94.14900 * 17 16 15 19 19 H 1.09001 * 108.82050 * 40.71939 * 18 17 16 20 20 C 1.53007 * 108.88955 * 159.25931 * 18 17 16 21 21 C 1.45538 * 112.40822 * 280.00923 * 18 17 16 22 22 C 1.50473 * 108.87836 * 86.38031 * 13 12 2 23 23 H 1.08999 * 109.46883 * 305.77325 * 1 2 3 24 24 H 1.09003 * 109.47050 * 65.76802 * 1 2 3 25 25 H 1.08999 * 109.47709 * 185.77299 * 1 2 3 26 26 H 0.97004 * 119.99962 * 179.97438 * 7 6 4 27 27 H 1.00906 * 110.99996 * 209.68138 * 12 2 1 28 28 H 1.08996 * 108.81492 * 76.63987 * 15 13 12 29 29 H 1.08996 * 108.72226 * 318.30324 * 15 13 12 30 30 H 1.08998 * 108.87703 * 197.50510 * 16 15 13 31 31 H 1.09000 * 108.87718 * 79.05617 * 16 15 13 32 32 H 1.08998 * 109.62932 * 334.43949 * 17 16 15 33 33 H 1.09001 * 109.62371 * 213.86173 * 17 16 15 34 34 H 1.09002 * 109.46849 * 182.88652 * 20 18 17 35 35 H 1.08998 * 109.47407 * 302.88485 * 20 18 17 36 36 H 1.08994 * 109.47290 * 62.89128 * 20 18 17 37 37 H 1.08992 * 108.89851 * 301.18898 * 21 18 17 38 38 H 1.08999 * 108.89545 * 182.68837 * 21 18 17 39 39 H 1.08998 * 109.62784 * 95.22316 * 22 13 12 40 40 H 1.08999 * 109.62843 * 334.64172 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6531 -1.5886 1.1315 6 6 1.6992 -0.2394 2.4828 7 7 0.9436 0.8302 2.6034 8 14 2.3212 -1.1203 4.0080 9 1 3.1453 -2.2877 3.6039 10 1 3.1465 -0.1874 4.8166 11 1 1.1659 -1.5866 4.8162 12 7 2.0196 -0.6926 -1.1994 13 6 2.0988 0.2266 -2.3426 14 1 1.3078 0.9707 -2.2497 15 6 1.8809 -0.5732 -3.6412 16 6 2.3595 0.1824 -4.8957 17 6 1.9940 1.6418 -4.8632 18 6 3.1847 2.4323 -4.2831 19 1 4.1097 2.0236 -4.6899 20 6 3.0614 3.8968 -4.7086 21 6 3.2391 2.3666 -2.8302 22 6 3.4308 0.9260 -2.3136 23 1 -0.3633 0.6008 0.8338 24 1 -0.3633 0.4218 -0.9371 25 1 -0.3634 -1.0224 0.1034 26 1 0.7089 1.1615 3.4844 27 1 2.9118 -1.1306 -1.0251 28 1 0.8180 -0.7906 -3.7460 29 1 2.4261 -1.5142 -3.5683 30 1 1.9082 -0.2746 -5.7763 31 1 3.4432 0.0919 -4.9699 32 1 1.1169 1.7856 -4.2324 33 1 1.7820 1.9887 -5.8746 34 1 3.9253 4.4542 -4.3466 35 1 3.0198 3.9570 -5.7961 36 1 2.1513 4.3225 -4.2861 37 1 2.3103 2.7666 -2.4237 38 1 4.0689 2.9805 -2.4800 39 1 4.1358 0.3976 -2.9554 40 1 3.8092 0.9507 -1.2917 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227308330.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:35 Heat of formation + Delta-G solvation = -30.711592 kcal Electronic energy + Delta-G solvation = -16516.450668 eV Core-core repulsion = 14136.694280 eV Total energy + Delta-G solvation = -2379.756388 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.18061 -35.78936 -33.28733 -32.24433 -30.59864 -28.01693 -26.38632 -25.11370 -23.65469 -22.70309 -20.11746 -19.71984 -18.82832 -16.39421 -15.31202 -14.97982 -14.68120 -14.18494 -14.02363 -13.58430 -13.03957 -12.78251 -12.53594 -12.24492 -12.12587 -11.74449 -11.48840 -11.25991 -11.04547 -10.90381 -10.61487 -10.48379 -10.36250 -10.19543 -10.12673 -10.07153 -10.03355 -9.85658 -9.53710 -8.75670 -8.45021 -7.12718 -5.99588 -4.04970 3.30115 3.38001 3.42257 4.42760 4.76126 4.85836 5.03531 5.28494 5.33345 5.37258 5.49656 5.56037 5.63823 5.71121 5.81049 5.83844 5.94003 6.01924 6.16138 6.24585 6.29015 6.33393 6.39453 6.47819 6.50269 6.62239 6.67439 6.82956 6.89075 6.97098 7.20559 7.31390 7.60294 7.83645 7.96241 8.30724 8.48994 8.77109 9.07903 9.60879 11.07222 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.039856 B = 0.006481 C = 0.006176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.355508 B = 4319.011557 C = 4532.795581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.212 3.788 3 H 0.002 0.998 4 C -0.517 4.517 5 H 0.059 0.941 6 C 0.061 3.939 7 N -0.890 5.890 8 Si 0.895 3.105 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.284 1.284 12 N -0.690 5.690 13 C 0.090 3.910 14 H 0.066 0.934 15 C -0.102 4.102 16 C -0.116 4.116 17 C -0.112 4.112 18 C -0.086 4.086 19 H 0.062 0.938 20 C -0.149 4.149 21 C -0.112 4.112 22 C -0.141 4.141 23 H 0.075 0.925 24 H 0.004 0.996 25 H 0.030 0.970 26 H 0.259 0.741 27 H 0.329 0.671 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.056 0.944 34 H 0.050 0.950 35 H 0.050 0.950 36 H 0.053 0.947 37 H 0.060 0.940 38 H 0.052 0.948 39 H 0.058 0.942 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.611 2.875 -13.169 13.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.105 3.895 3 H 0.020 0.980 4 C -0.555 4.555 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.723 3.277 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.210 1.210 12 N -0.320 5.320 13 C -0.021 4.021 14 H 0.084 0.916 15 C -0.140 4.140 16 C -0.155 4.155 17 C -0.150 4.150 18 C -0.105 4.105 19 H 0.081 0.919 20 C -0.207 4.207 21 C -0.150 4.150 22 C -0.180 4.180 23 H 0.094 0.906 24 H 0.023 0.977 25 H 0.050 0.950 26 H 0.069 0.931 27 H 0.147 0.853 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.889 2.741 -13.178 13.766 hybrid contribution 1.047 0.141 1.187 1.589 sum 3.936 2.883 -11.991 12.945 Atomic orbital electron populations 1.21696 0.98115 0.99901 0.98248 1.19077 0.92342 0.92452 0.85657 0.98039 1.21329 1.31266 1.12363 0.90571 0.92301 1.24921 0.95106 0.95002 0.99006 1.69927 1.36824 1.22947 1.23229 0.86499 0.78594 0.79629 0.83010 1.19791 1.21159 1.21021 1.60752 1.32540 1.32536 1.06208 1.21307 0.95441 0.93792 0.91554 0.91590 1.21870 1.00969 0.98441 0.92756 1.21337 1.00831 0.95432 0.97851 1.21408 0.98303 0.95078 1.00190 1.20074 0.98545 0.95365 0.96491 0.91922 1.21953 1.01644 0.96430 1.00631 1.20481 1.01933 0.97399 0.95139 1.22125 0.99200 0.95460 1.01237 0.90634 0.97745 0.95030 0.93085 0.85338 0.92514 0.92356 0.92896 0.92573 0.91479 0.92492 0.93071 0.93094 0.92739 0.92102 0.92883 0.92376 0.91350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.09 9.11 37.16 0.34 -2.75 16 2 C 0.21 5.42 2.22 -68.87 -0.15 5.27 16 3 H 0.00 0.05 7.48 -51.93 -0.39 -0.33 16 4 C -0.52 -14.31 8.59 -34.44 -0.30 -14.61 16 5 H 0.06 1.62 7.61 -52.49 -0.40 1.22 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.73 11.39 55.43 0.63 -25.10 16 8 Si 0.89 21.49 29.54 -169.99 -5.02 16.46 16 9 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 N -0.69 -14.88 5.93 -101.70 -0.60 -15.48 16 13 C 0.09 1.61 1.79 -68.42 -0.12 1.49 16 14 H 0.07 1.30 5.59 -51.93 -0.29 1.01 16 15 C -0.10 -1.56 5.45 -25.62 -0.14 -1.70 16 16 C -0.12 -1.46 5.31 -27.43 -0.15 -1.61 16 17 C -0.11 -1.37 4.98 -27.34 -0.14 -1.51 16 18 C -0.09 -1.06 2.22 -93.48 -0.21 -1.26 16 19 H 0.06 0.75 7.46 -51.93 -0.39 0.36 16 20 C -0.15 -1.61 8.99 37.16 0.33 -1.28 16 21 C -0.11 -1.62 4.44 -29.60 -0.13 -1.75 16 22 C -0.14 -2.31 4.82 -27.34 -0.13 -2.45 16 23 H 0.07 2.07 6.25 -51.93 -0.32 1.75 16 24 H 0.00 0.08 7.45 -51.93 -0.39 -0.30 16 25 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 27 H 0.33 6.99 7.85 -39.29 -0.31 6.69 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.90 8.12 -51.93 -0.42 0.48 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.68 6.63 -51.93 -0.34 0.34 16 32 H 0.07 0.91 6.98 -51.93 -0.36 0.55 16 33 H 0.06 0.61 7.93 -51.93 -0.41 0.20 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.05 0.49 8.07 -51.93 -0.42 0.07 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.97 7.47 -51.93 -0.39 0.58 16 38 H 0.05 0.74 8.11 -51.93 -0.42 0.32 16 39 H 0.06 0.87 6.98 -51.93 -0.36 0.51 16 40 H 0.07 1.29 7.49 -51.93 -0.39 0.90 16 LS Contribution 297.87 15.07 4.49 4.49 Total: -1.00 -27.99 297.87 -8.64 -36.63 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -7.25 Total: 3.55 kcal Atomic # 6 Polarization: -19.66 SS G_CDS: -0.89 Total: -20.55 kcal Atomic # 7 Polarization: -40.61 SS G_CDS: 0.03 Total: -40.58 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -27.99 -8.64 -36.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227308330.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.920 kcal (2) G-P(sol) polarization free energy of solvation -27.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds