Wall clock time and date at job start Mon Mar 30 2020 03:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47643 * 2 1 4 4 C 1.50706 * 109.47093 * 120.00092 * 2 1 3 5 5 H 1.07991 * 120.00260 * 119.99230 * 4 2 1 6 6 C 1.37880 * 119.99853 * 299.99843 * 4 2 1 7 7 N 1.31515 * 119.99852 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00254 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.47077 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47550 * 119.99905 * 8 6 4 11 11 H 1.48501 * 109.47653 * 240.00180 * 8 6 4 12 12 N 1.46897 * 109.46970 * 239.99661 * 2 1 3 13 13 C 1.46901 * 111.00145 * 85.73039 * 12 2 1 14 14 H 1.09003 * 108.76697 * 327.87553 * 13 12 2 15 15 C 1.54066 * 108.87850 * 209.36386 * 13 12 2 16 16 C 1.54068 * 112.81732 * 197.50324 * 15 13 12 17 17 C 1.50476 * 112.49569 * 318.28148 * 16 15 13 18 18 C 1.54241 * 108.52118 * 94.14900 * 17 16 15 19 19 H 1.09001 * 108.82050 * 40.71939 * 18 17 16 20 20 C 1.53007 * 108.88955 * 159.25931 * 18 17 16 21 21 C 1.45538 * 112.40822 * 280.00923 * 18 17 16 22 22 C 1.50473 * 108.87836 * 86.38031 * 13 12 2 23 23 H 1.08999 * 109.46883 * 305.77325 * 1 2 3 24 24 H 1.09003 * 109.47050 * 65.76802 * 1 2 3 25 25 H 1.08999 * 109.47709 * 185.77299 * 1 2 3 26 26 H 0.97004 * 119.99962 * 179.97438 * 7 6 4 27 27 H 1.00906 * 110.99996 * 209.68138 * 12 2 1 28 28 H 1.08996 * 108.81492 * 76.63987 * 15 13 12 29 29 H 1.08996 * 108.72226 * 318.30324 * 15 13 12 30 30 H 1.08998 * 108.87703 * 197.50510 * 16 15 13 31 31 H 1.09000 * 108.87718 * 79.05617 * 16 15 13 32 32 H 1.08998 * 109.62932 * 334.43949 * 17 16 15 33 33 H 1.09001 * 109.62371 * 213.86173 * 17 16 15 34 34 H 1.09002 * 109.46849 * 182.88652 * 20 18 17 35 35 H 1.08998 * 109.47407 * 302.88485 * 20 18 17 36 36 H 1.08994 * 109.47290 * 62.89128 * 20 18 17 37 37 H 1.08992 * 108.89851 * 301.18898 * 21 18 17 38 38 H 1.08999 * 108.89545 * 182.68837 * 21 18 17 39 39 H 1.08998 * 109.62784 * 95.22316 * 22 13 12 40 40 H 1.08999 * 109.62843 * 334.64172 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6531 -1.5886 1.1315 6 6 1.6992 -0.2394 2.4828 7 7 0.9436 0.8302 2.6034 8 14 2.3212 -1.1203 4.0080 9 1 3.1453 -2.2877 3.6039 10 1 3.1465 -0.1874 4.8166 11 1 1.1659 -1.5866 4.8162 12 7 2.0196 -0.6926 -1.1994 13 6 2.0988 0.2266 -2.3426 14 1 1.3078 0.9707 -2.2497 15 6 1.8809 -0.5732 -3.6412 16 6 2.3595 0.1824 -4.8957 17 6 1.9940 1.6418 -4.8632 18 6 3.1847 2.4323 -4.2831 19 1 4.1097 2.0236 -4.6899 20 6 3.0614 3.8968 -4.7086 21 6 3.2391 2.3666 -2.8302 22 6 3.4308 0.9260 -2.3136 23 1 -0.3633 0.6008 0.8338 24 1 -0.3633 0.4218 -0.9371 25 1 -0.3634 -1.0224 0.1034 26 1 0.7089 1.1615 3.4844 27 1 2.9118 -1.1306 -1.0251 28 1 0.8180 -0.7906 -3.7460 29 1 2.4261 -1.5142 -3.5683 30 1 1.9082 -0.2746 -5.7763 31 1 3.4432 0.0919 -4.9699 32 1 1.1169 1.7856 -4.2324 33 1 1.7820 1.9887 -5.8746 34 1 3.9253 4.4542 -4.3466 35 1 3.0198 3.9570 -5.7961 36 1 2.1513 4.3225 -4.2861 37 1 2.3103 2.7666 -2.4237 38 1 4.0689 2.9805 -2.4800 39 1 4.1358 0.3976 -2.9554 40 1 3.8092 0.9507 -1.2917 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227308330.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:35 Heat of formation + Delta-G solvation = -46.571332 kcal Electronic energy + Delta-G solvation = -16517.138398 eV Core-core repulsion = 14136.694280 eV Total energy + Delta-G solvation = -2380.444118 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.43485 -37.43861 -34.99559 -33.58920 -32.25819 -29.58578 -27.77064 -27.16553 -24.95385 -23.92715 -21.78372 -21.13962 -20.16750 -18.40388 -16.90087 -16.61156 -16.00589 -15.63713 -15.27302 -15.07352 -14.65399 -14.20869 -13.82591 -13.54128 -13.49304 -13.32120 -12.90699 -12.82713 -12.68583 -12.57236 -12.36016 -12.23087 -12.13289 -11.68701 -11.50029 -11.38244 -11.21828 -11.05475 -11.00895 -10.82665 -10.58340 -8.92923 -8.13808 -6.27286 1.39942 1.41645 1.53610 2.40943 3.15062 3.56568 3.67571 3.90659 4.09621 4.21968 4.28363 4.38474 4.46538 4.54984 4.68795 4.79054 4.83967 4.87878 4.92979 5.02259 5.05645 5.08585 5.12720 5.20664 5.23721 5.30303 5.33783 5.41961 5.47424 5.49877 5.55071 5.58612 5.66137 5.73116 5.87596 6.20968 6.53065 6.83766 7.06061 7.43325 8.92630 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.039856 B = 0.006481 C = 0.006176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.355508 B = 4319.011557 C = 4532.795581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.220 3.780 3 H -0.031 1.031 4 C -0.536 4.536 5 H 0.058 0.942 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.963 3.037 9 H -0.266 1.266 10 H -0.280 1.280 11 H -0.280 1.280 12 N -0.690 5.690 13 C 0.092 3.908 14 H 0.043 0.957 15 C -0.096 4.096 16 C -0.110 4.110 17 C -0.112 4.112 18 C -0.086 4.086 19 H 0.076 0.924 20 C -0.147 4.147 21 C -0.105 4.105 22 C -0.135 4.135 23 H 0.052 0.948 24 H 0.019 0.981 25 H 0.025 0.975 26 H 0.262 0.738 27 H 0.331 0.669 28 H 0.048 0.952 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.047 0.953 33 H 0.080 0.920 34 H 0.054 0.946 35 H 0.069 0.931 36 H 0.045 0.955 37 H 0.037 0.963 38 H 0.057 0.943 39 H 0.079 0.921 40 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.591 2.424 -14.626 15.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.111 3.889 3 H -0.013 1.013 4 C -0.574 4.574 5 H 0.076 0.924 6 C -0.187 4.187 7 N -0.559 5.559 8 Si 0.788 3.212 9 H -0.190 1.190 10 H -0.206 1.206 11 H -0.206 1.206 12 N -0.320 5.320 13 C -0.018 4.018 14 H 0.061 0.939 15 C -0.134 4.134 16 C -0.148 4.148 17 C -0.149 4.149 18 C -0.104 4.104 19 H 0.094 0.906 20 C -0.204 4.204 21 C -0.143 4.143 22 C -0.174 4.174 23 H 0.071 0.929 24 H 0.038 0.962 25 H 0.044 0.956 26 H 0.071 0.929 27 H 0.148 0.852 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.065 0.935 33 H 0.098 0.902 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.065 0.935 37 H 0.056 0.944 38 H 0.076 0.924 39 H 0.097 0.903 40 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 3.873 2.288 -14.657 15.332 hybrid contribution 0.724 0.303 1.622 1.802 sum 4.597 2.591 -13.035 14.063 Atomic orbital electron populations 1.21522 0.98204 0.98985 0.98052 1.18832 0.92213 0.90845 0.86985 1.01303 1.21639 1.31541 1.12538 0.91730 0.92406 1.25752 0.95204 0.95685 1.02090 1.70055 1.37645 1.24142 1.24030 0.85438 0.78111 0.78603 0.79042 1.19039 1.20607 1.20592 1.60713 1.32662 1.33004 1.05631 1.21373 0.95599 0.93218 0.91573 0.93883 1.21807 1.00693 0.98431 0.92491 1.21304 1.01554 0.95252 0.96698 1.21415 0.97400 0.95021 1.01062 1.20056 0.99219 0.96683 0.94431 0.90569 1.21921 1.01465 0.95182 1.01812 1.20441 1.00913 0.95861 0.97066 1.22001 0.98472 0.96948 0.99967 0.92899 0.96250 0.95629 0.92919 0.85195 0.93325 0.92190 0.90872 0.91490 0.93461 0.90174 0.92666 0.91208 0.93543 0.94374 0.92445 0.90272 0.94466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.72 9.11 71.98 0.66 -5.06 16 2 C 0.22 11.58 2.22 44.17 0.10 11.68 16 3 H -0.03 -1.78 7.48 -2.39 -0.02 -1.80 16 4 C -0.54 -30.21 8.59 25.60 0.22 -29.99 16 5 H 0.06 3.20 7.61 -2.91 -0.02 3.17 16 6 C 0.01 0.66 5.30 84.66 0.45 1.11 16 7 N -0.92 -54.19 11.39 21.45 0.24 -53.95 16 8 Si 0.96 44.27 29.54 68.60 2.03 46.30 16 9 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 10 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 11 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 12 N -0.69 -30.24 5.93 -475.66 -2.82 -33.06 16 13 C 0.09 3.34 1.79 44.46 0.08 3.42 16 14 H 0.04 1.75 5.59 -2.39 -0.01 1.74 16 15 C -0.10 -2.81 5.45 31.32 0.17 -2.64 16 16 C -0.11 -2.44 5.31 30.14 0.16 -2.28 16 17 C -0.11 -2.46 4.98 30.20 0.15 -2.31 16 18 C -0.09 -1.91 2.22 -12.65 -0.03 -1.94 16 19 H 0.08 1.55 7.46 -2.39 -0.02 1.53 16 20 C -0.15 -2.83 8.99 71.98 0.65 -2.18 16 21 C -0.10 -3.02 4.44 28.74 0.13 -2.89 16 22 C -0.13 -4.42 4.82 30.20 0.15 -4.27 16 23 H 0.05 2.99 6.25 -2.39 -0.01 2.98 16 24 H 0.02 0.90 7.45 -2.39 -0.02 0.88 16 25 H 0.02 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 27 H 0.33 14.22 7.85 -89.69 -0.70 13.51 16 28 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.06 1.74 8.12 -2.39 -0.02 1.72 16 30 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.07 1.37 6.63 -2.39 -0.02 1.36 16 32 H 0.05 1.24 6.98 -2.39 -0.02 1.22 16 33 H 0.08 1.43 7.93 -2.39 -0.02 1.41 16 34 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.07 1.10 8.07 -2.39 -0.02 1.08 16 36 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.04 1.25 7.47 -2.39 -0.02 1.24 16 38 H 0.06 1.58 8.11 -2.39 -0.02 1.56 16 39 H 0.08 2.24 6.98 -2.39 -0.02 2.22 16 40 H 0.04 1.44 7.49 -2.39 -0.02 1.42 16 Total: -1.00 -60.51 297.87 2.61 -57.90 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: 0.28 Total: 20.17 kcal Atomic # 6 Polarization: -40.23 SS G_CDS: 2.88 Total: -37.36 kcal Atomic # 7 Polarization: -84.44 SS G_CDS: -2.58 Total: -87.01 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -60.51 2.61 -57.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227308330.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.331 kcal (2) G-P(sol) polarization free energy of solvation -60.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds