Wall clock time and date at job start Mon Mar 30 2020 03:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.47076 * 2 1 4 4 C 1.50702 * 109.47056 * 239.99674 * 2 1 3 5 5 H 1.07995 * 119.99998 * 268.41532 * 4 2 1 6 6 C 1.37873 * 119.99448 * 88.42001 * 4 2 1 7 7 N 1.31519 * 120.00683 * 353.33544 * 6 4 2 8 8 Si 1.86804 * 119.99872 * 173.33467 * 6 4 2 9 9 H 1.48498 * 109.46897 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47540 * 240.00099 * 8 6 4 11 11 H 1.48503 * 109.47043 * 119.99495 * 8 6 4 12 12 N 1.46905 * 109.46847 * 120.00279 * 2 1 3 13 13 C 1.46907 * 110.99540 * 274.99648 * 12 2 1 14 14 H 1.08994 * 108.85505 * 33.56360 * 13 12 2 15 15 C 1.54060 * 108.87834 * 275.00027 * 13 12 2 16 16 C 1.54065 * 112.82022 * 197.50803 * 15 13 12 17 17 C 1.50479 * 112.49633 * 318.28306 * 16 15 13 18 18 C 1.54244 * 108.51495 * 94.15162 * 17 16 15 19 19 H 1.09004 * 108.89253 * 40.76351 * 18 17 16 20 20 C 1.52998 * 108.89638 * 159.25480 * 18 17 16 21 21 C 1.45542 * 112.41009 * 280.00940 * 18 17 16 22 22 C 1.50478 * 108.87153 * 152.02658 * 13 12 2 23 23 H 1.09003 * 109.46998 * 299.42253 * 1 2 3 24 24 H 1.09000 * 109.46916 * 59.42189 * 1 2 3 25 25 H 1.09001 * 109.47170 * 179.42043 * 1 2 3 26 26 H 0.96995 * 119.99389 * 354.50283 * 7 6 4 27 27 H 1.00899 * 111.00288 * 38.95071 * 12 2 1 28 28 H 1.08998 * 108.81444 * 318.37181 * 15 13 12 29 29 H 1.08999 * 108.81302 * 76.75941 * 15 13 12 30 30 H 1.08998 * 108.87581 * 79.06098 * 16 15 13 31 31 H 1.09001 * 108.87844 * 197.50981 * 16 15 13 32 32 H 1.09000 * 109.62959 * 213.85778 * 17 16 15 33 33 H 1.09003 * 109.62802 * 334.44760 * 17 16 15 34 34 H 1.08999 * 109.46814 * 59.99634 * 20 18 17 35 35 H 1.08992 * 109.47196 * 180.02562 * 20 18 17 36 36 H 1.09000 * 109.46980 * 300.00212 * 20 18 17 37 37 H 1.08997 * 108.89641 * 182.69324 * 21 18 17 38 38 H 1.08998 * 108.89532 * 301.18634 * 21 18 17 39 39 H 1.08999 * 109.63093 * 334.63393 * 22 13 12 40 40 H 1.08995 * 109.62826 * 95.22131 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.2367 -1.7704 -1.1964 6 6 2.2311 -0.0072 -2.3996 7 7 1.8600 1.2519 -2.4809 8 14 3.0274 -0.8429 -3.8683 9 1 3.3494 -2.2506 -3.5223 10 1 4.2752 -0.1239 -4.2305 11 1 2.0900 -0.8188 -5.0198 12 7 2.0197 -0.6926 1.1995 13 6 2.0825 0.2226 2.3469 14 1 1.2692 0.9438 2.2672 15 6 3.4244 0.9783 2.3089 16 6 3.7827 1.6282 3.6591 17 6 2.5954 2.2750 4.3198 18 6 1.9679 1.2621 5.2993 19 1 2.7664 0.7335 5.8200 20 6 1.1279 2.0224 6.3275 21 6 1.1206 0.2898 4.6248 22 6 1.9042 -0.5711 3.6129 23 1 -0.3633 0.5049 0.8951 24 1 -0.3633 0.5228 -0.8848 25 1 -0.3633 -1.0276 -0.0104 26 1 1.3753 1.6629 -1.7481 27 1 1.4495 -1.4980 1.4101 28 1 4.2142 0.2787 2.0350 29 1 3.3674 1.7581 1.5495 30 1 4.1825 0.8626 4.3239 31 1 4.5497 2.3848 3.4939 32 1 2.9181 3.1611 4.8663 33 1 1.8625 2.5547 3.5629 34 1 0.3409 2.5762 5.8157 35 1 0.6800 1.3149 7.0253 36 1 1.7648 2.7177 6.8743 37 1 0.6709 -0.3647 5.3714 38 1 0.3266 0.8189 4.0977 39 1 1.3463 -1.4826 3.3982 40 1 2.8803 -0.8247 4.0265 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227308339.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:38 Heat of formation + Delta-G solvation = -33.791285 kcal Electronic energy + Delta-G solvation = -16527.016215 eV Core-core repulsion = 14147.126281 eV Total energy + Delta-G solvation = -2379.889934 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.25573 -36.05904 -33.35928 -32.31454 -30.83169 -28.02616 -26.37459 -24.78960 -23.79374 -22.67133 -20.52781 -20.08653 -18.66300 -16.76237 -15.64566 -14.80643 -14.70976 -14.24184 -13.74013 -13.63232 -13.37510 -12.76395 -12.51421 -12.35238 -12.31906 -11.91515 -11.60172 -11.38806 -11.22646 -11.11506 -10.65580 -10.49418 -10.43225 -10.32434 -10.16904 -10.09167 -10.06803 -10.02416 -9.61824 -8.47653 -8.32330 -7.17870 -6.27531 -3.95965 3.49339 3.52829 3.67417 4.58625 4.67864 4.74087 4.97048 5.14989 5.32513 5.37510 5.45566 5.51306 5.59053 5.59576 5.72739 5.74900 5.87950 5.93863 6.06563 6.15737 6.23125 6.24208 6.33331 6.36820 6.42060 6.45292 6.52462 6.55912 6.61605 6.75534 6.84748 6.89930 7.13199 7.32122 8.02290 8.40147 8.56870 8.68167 8.98040 9.73653 11.10216 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.045121 B = 0.006321 C = 0.006116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.402254 B = 4428.965162 C = 4577.278281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.194 3.806 3 H 0.038 0.962 4 C -0.570 4.570 5 H 0.052 0.948 6 C 0.017 3.983 7 N -0.919 5.919 8 Si 1.072 2.928 9 H -0.289 1.289 10 H -0.287 1.287 11 H -0.291 1.291 12 N -0.678 5.678 13 C 0.090 3.910 14 H 0.030 0.970 15 C -0.103 4.103 16 C -0.116 4.116 17 C -0.112 4.112 18 C -0.088 4.088 19 H 0.065 0.935 20 C -0.149 4.149 21 C -0.112 4.112 22 C -0.115 4.115 23 H 0.014 0.986 24 H 0.050 0.950 25 H 0.038 0.962 26 H 0.268 0.732 27 H 0.322 0.678 28 H 0.068 0.932 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.053 0.947 35 H 0.050 0.950 36 H 0.051 0.949 37 H 0.054 0.946 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.142 0.316 14.933 14.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.086 3.914 3 H 0.056 0.944 4 C -0.609 4.609 5 H 0.070 0.930 6 C -0.187 4.187 7 N -0.556 5.556 8 Si 0.901 3.099 9 H -0.215 1.215 10 H -0.214 1.214 11 H -0.217 1.217 12 N -0.308 5.308 13 C -0.020 4.020 14 H 0.048 0.952 15 C -0.141 4.141 16 C -0.154 4.154 17 C -0.150 4.150 18 C -0.106 4.106 19 H 0.083 0.917 20 C -0.206 4.206 21 C -0.150 4.150 22 C -0.153 4.153 23 H 0.033 0.967 24 H 0.069 0.931 25 H 0.057 0.943 26 H 0.079 0.921 27 H 0.140 0.860 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.080 0.658 13.217 13.278 hybrid contribution -1.615 -0.124 1.711 2.356 sum -0.535 0.535 14.928 14.947 Atomic orbital electron populations 1.22592 1.01942 0.99519 0.98636 1.19415 0.88418 0.95139 0.88410 0.94363 1.21899 1.47019 0.96851 0.95095 0.93012 1.25777 0.96362 0.95737 1.00789 1.70741 1.37123 1.12467 1.35249 0.83513 0.76440 0.74842 0.75072 1.21532 1.21372 1.21738 1.60951 1.57908 1.08631 1.03308 1.21220 0.96211 0.94163 0.90381 0.95190 1.21869 0.97776 0.99108 0.95386 1.21338 0.97425 0.99347 0.97296 1.21415 0.98139 0.97347 0.98097 1.20076 0.98140 0.96292 0.96138 0.91678 1.21948 0.99941 1.00101 0.98645 1.20532 0.98566 0.97540 0.98386 1.21584 1.00354 0.97835 0.95553 0.96719 0.93112 0.94309 0.92145 0.86017 0.91357 0.92754 0.92512 0.92745 0.92384 0.91638 0.92837 0.93078 0.92949 0.92683 0.92361 0.92005 0.91516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.88 9.04 37.16 0.34 -3.55 16 2 C 0.19 4.90 1.99 -68.86 -0.14 4.77 16 3 H 0.04 1.06 6.14 -51.93 -0.32 0.74 16 4 C -0.57 -16.19 8.64 -34.44 -0.30 -16.48 16 5 H 0.05 1.50 7.82 -52.49 -0.41 1.09 16 6 C 0.02 0.48 5.45 -17.82 -0.10 0.38 16 7 N -0.92 -27.95 13.55 55.43 0.75 -27.20 16 8 Si 1.07 25.82 29.91 -169.99 -5.08 20.74 16 9 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 N -0.68 -14.65 6.01 -101.69 -0.61 -15.26 16 13 C 0.09 1.63 1.83 -68.42 -0.13 1.50 16 14 H 0.03 0.58 5.53 -51.93 -0.29 0.29 16 15 C -0.10 -1.83 5.22 -25.62 -0.13 -1.96 16 16 C -0.12 -1.61 5.31 -27.43 -0.15 -1.75 16 17 C -0.11 -1.43 4.98 -27.34 -0.14 -1.56 16 18 C -0.09 -1.02 2.21 -93.49 -0.21 -1.22 16 19 H 0.06 0.73 7.47 -51.93 -0.39 0.34 16 20 C -0.15 -1.48 8.97 37.16 0.33 -1.15 16 21 C -0.11 -1.42 4.44 -29.59 -0.13 -1.55 16 22 C -0.12 -1.69 5.27 -27.34 -0.14 -1.83 16 23 H 0.01 0.29 7.42 -51.93 -0.39 -0.09 16 24 H 0.05 1.26 7.67 -51.93 -0.40 0.86 16 25 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 26 H 0.27 8.09 6.37 -40.82 -0.26 7.83 16 27 H 0.32 6.59 7.51 -39.29 -0.30 6.29 16 28 H 0.07 1.30 8.12 -51.93 -0.42 0.88 16 29 H 0.05 1.08 7.71 -51.93 -0.40 0.68 16 30 H 0.06 0.74 6.63 -51.93 -0.34 0.39 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.66 7.97 -51.93 -0.41 0.24 16 33 H 0.06 0.93 6.97 -51.93 -0.36 0.57 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.05 0.47 8.11 -51.93 -0.42 0.04 16 36 H 0.05 0.47 8.12 -51.93 -0.42 0.05 16 37 H 0.05 0.62 8.08 -51.93 -0.42 0.20 16 38 H 0.06 0.79 7.47 -51.93 -0.39 0.40 16 39 H 0.06 0.90 7.26 -51.93 -0.38 0.52 16 40 H 0.07 0.95 6.98 -51.93 -0.36 0.59 16 LS Contribution 297.92 15.07 4.49 4.49 Total: -1.00 -29.53 297.92 -8.48 -38.01 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -7.14 Total: 3.63 kcal Atomic # 6 Polarization: -23.53 SS G_CDS: -0.89 Total: -24.41 kcal Atomic # 7 Polarization: -42.60 SS G_CDS: 0.14 Total: -42.46 kcal Atomic # 14 Polarization: 25.82 SS G_CDS: -5.08 Total: 20.74 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -29.53 -8.48 -38.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227308339.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.216 kcal (2) G-P(sol) polarization free energy of solvation -29.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds