Wall clock time and date at job start Mon Mar 30 2020 03:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.47076 * 2 1 4 4 C 1.50702 * 109.47056 * 239.99674 * 2 1 3 5 5 H 1.07995 * 119.99998 * 268.41532 * 4 2 1 6 6 C 1.37873 * 119.99448 * 88.42001 * 4 2 1 7 7 N 1.31519 * 120.00683 * 353.33544 * 6 4 2 8 8 Si 1.86804 * 119.99872 * 173.33467 * 6 4 2 9 9 H 1.48498 * 109.46897 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47540 * 240.00099 * 8 6 4 11 11 H 1.48503 * 109.47043 * 119.99495 * 8 6 4 12 12 N 1.46905 * 109.46847 * 120.00279 * 2 1 3 13 13 C 1.46907 * 110.99540 * 274.99648 * 12 2 1 14 14 H 1.08994 * 108.85505 * 33.56360 * 13 12 2 15 15 C 1.54060 * 108.87834 * 275.00027 * 13 12 2 16 16 C 1.54065 * 112.82022 * 197.50803 * 15 13 12 17 17 C 1.50479 * 112.49633 * 318.28306 * 16 15 13 18 18 C 1.54244 * 108.51495 * 94.15162 * 17 16 15 19 19 H 1.09004 * 108.89253 * 40.76351 * 18 17 16 20 20 C 1.52998 * 108.89638 * 159.25480 * 18 17 16 21 21 C 1.45542 * 112.41009 * 280.00940 * 18 17 16 22 22 C 1.50478 * 108.87153 * 152.02658 * 13 12 2 23 23 H 1.09003 * 109.46998 * 299.42253 * 1 2 3 24 24 H 1.09000 * 109.46916 * 59.42189 * 1 2 3 25 25 H 1.09001 * 109.47170 * 179.42043 * 1 2 3 26 26 H 0.96995 * 119.99389 * 354.50283 * 7 6 4 27 27 H 1.00899 * 111.00288 * 38.95071 * 12 2 1 28 28 H 1.08998 * 108.81444 * 318.37181 * 15 13 12 29 29 H 1.08999 * 108.81302 * 76.75941 * 15 13 12 30 30 H 1.08998 * 108.87581 * 79.06098 * 16 15 13 31 31 H 1.09001 * 108.87844 * 197.50981 * 16 15 13 32 32 H 1.09000 * 109.62959 * 213.85778 * 17 16 15 33 33 H 1.09003 * 109.62802 * 334.44760 * 17 16 15 34 34 H 1.08999 * 109.46814 * 59.99634 * 20 18 17 35 35 H 1.08992 * 109.47196 * 180.02562 * 20 18 17 36 36 H 1.09000 * 109.46980 * 300.00212 * 20 18 17 37 37 H 1.08997 * 108.89641 * 182.69324 * 21 18 17 38 38 H 1.08998 * 108.89532 * 301.18634 * 21 18 17 39 39 H 1.08999 * 109.63093 * 334.63393 * 22 13 12 40 40 H 1.08995 * 109.62826 * 95.22131 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.2367 -1.7704 -1.1964 6 6 2.2311 -0.0072 -2.3996 7 7 1.8600 1.2519 -2.4809 8 14 3.0274 -0.8429 -3.8683 9 1 3.3494 -2.2506 -3.5223 10 1 4.2752 -0.1239 -4.2305 11 1 2.0900 -0.8188 -5.0198 12 7 2.0197 -0.6926 1.1995 13 6 2.0825 0.2226 2.3469 14 1 1.2692 0.9438 2.2672 15 6 3.4244 0.9783 2.3089 16 6 3.7827 1.6282 3.6591 17 6 2.5954 2.2750 4.3198 18 6 1.9679 1.2621 5.2993 19 1 2.7664 0.7335 5.8200 20 6 1.1279 2.0224 6.3275 21 6 1.1206 0.2898 4.6248 22 6 1.9042 -0.5711 3.6129 23 1 -0.3633 0.5049 0.8951 24 1 -0.3633 0.5228 -0.8848 25 1 -0.3633 -1.0276 -0.0104 26 1 1.3753 1.6629 -1.7481 27 1 1.4495 -1.4980 1.4101 28 1 4.2142 0.2787 2.0350 29 1 3.3674 1.7581 1.5495 30 1 4.1825 0.8626 4.3239 31 1 4.5497 2.3848 3.4939 32 1 2.9181 3.1611 4.8663 33 1 1.8625 2.5547 3.5629 34 1 0.3409 2.5762 5.8157 35 1 0.6800 1.3149 7.0253 36 1 1.7648 2.7177 6.8743 37 1 0.6709 -0.3647 5.3714 38 1 0.3266 0.8189 4.0977 39 1 1.3463 -1.4826 3.3982 40 1 2.8803 -0.8247 4.0265 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227308339.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:38 Heat of formation + Delta-G solvation = -51.259520 kcal Electronic energy + Delta-G solvation = -16527.773694 eV Core-core repulsion = 14147.126281 eV Total energy + Delta-G solvation = -2380.647413 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.48819 -37.72061 -35.09667 -33.63229 -32.46709 -29.53005 -27.69051 -26.89622 -25.12503 -23.87947 -22.44846 -21.14611 -20.04814 -18.85404 -17.10199 -16.12242 -16.03901 -15.65445 -15.40775 -15.23773 -14.89793 -14.16859 -13.86081 -13.66746 -13.46665 -13.35495 -13.25047 -13.01734 -12.91021 -12.59574 -12.43114 -12.03085 -11.92201 -11.73693 -11.62391 -11.40280 -11.26275 -11.19721 -11.09456 -10.57737 -10.51578 -8.98334 -8.57358 -6.27233 1.53261 1.62153 1.79421 2.58545 3.15653 3.48574 3.64727 3.84564 4.04990 4.11110 4.24963 4.33003 4.38040 4.44586 4.48048 4.54348 4.66406 4.75914 4.80514 4.82587 4.86451 4.94266 5.05764 5.07814 5.09698 5.17297 5.26279 5.29394 5.34894 5.39710 5.41341 5.49360 5.54587 5.59496 5.97415 6.20960 6.51965 6.78292 6.84212 7.50564 8.79770 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.045121 B = 0.006321 C = 0.006116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.402254 B = 4428.965162 C = 4577.278281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.198 3.802 3 H 0.005 0.995 4 C -0.582 4.582 5 H 0.044 0.956 6 C -0.034 4.034 7 N -0.943 5.943 8 Si 1.119 2.881 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.281 1.281 12 N -0.686 5.686 13 C 0.095 3.905 14 H 0.015 0.985 15 C -0.100 4.100 16 C -0.107 4.107 17 C -0.112 4.112 18 C -0.087 4.087 19 H 0.077 0.923 20 C -0.146 4.146 21 C -0.106 4.106 22 C -0.110 4.110 23 H 0.035 0.965 24 H 0.027 0.973 25 H 0.048 0.952 26 H 0.255 0.745 27 H 0.330 0.670 28 H 0.051 0.949 29 H 0.017 0.983 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.042 0.958 34 H 0.046 0.954 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.076 0.924 38 H 0.044 0.956 39 H 0.065 0.935 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.059 -0.545 16.795 16.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.089 3.911 3 H 0.023 0.977 4 C -0.621 4.621 5 H 0.062 0.938 6 C -0.232 4.232 7 N -0.582 5.582 8 Si 0.941 3.059 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.207 1.207 12 N -0.316 5.316 13 C -0.014 4.014 14 H 0.033 0.967 15 C -0.139 4.139 16 C -0.145 4.145 17 C -0.149 4.149 18 C -0.106 4.106 19 H 0.096 0.904 20 C -0.203 4.203 21 C -0.144 4.144 22 C -0.148 4.148 23 H 0.054 0.946 24 H 0.046 0.954 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.149 0.851 28 H 0.070 0.930 29 H 0.036 0.964 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.063 0.937 39 H 0.083 0.917 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.271 -0.209 15.110 15.164 hybrid contribution -1.673 0.145 1.173 2.048 sum -0.402 -0.064 16.282 16.288 Atomic orbital electron populations 1.22378 1.00326 1.00039 0.98556 1.19180 0.89492 0.93240 0.89188 0.97707 1.22235 1.46727 0.96636 0.96467 0.93773 1.27186 0.96469 0.95665 1.03834 1.70858 1.38644 1.13563 1.35090 0.82914 0.75902 0.74703 0.72343 1.19831 1.20799 1.20677 1.60806 1.57837 1.09404 1.03599 1.21283 0.95707 0.93670 0.90776 0.96682 1.21846 0.97182 0.97804 0.97023 1.21281 0.98270 0.99834 0.95130 1.21419 0.97047 0.98490 0.97985 1.20070 0.98543 0.95884 0.96068 0.90424 1.21907 0.99718 1.00357 0.98298 1.20498 0.98089 0.97708 0.98134 1.21532 1.01379 0.97727 0.94114 0.94599 0.95371 0.93282 0.93453 0.85146 0.93036 0.96363 0.90725 0.92064 0.90494 0.93902 0.93457 0.91879 0.91826 0.90522 0.93695 0.91658 0.90579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.20 9.04 71.98 0.65 -6.55 16 2 C 0.20 10.27 1.99 44.17 0.09 10.36 16 3 H 0.00 0.29 6.14 -2.39 -0.01 0.27 16 4 C -0.58 -33.64 8.64 25.60 0.22 -33.42 16 5 H 0.04 2.57 7.82 -2.91 -0.02 2.54 16 6 C -0.03 -2.02 5.45 84.65 0.46 -1.56 16 7 N -0.94 -58.96 13.55 21.45 0.29 -58.67 16 8 Si 1.12 52.12 29.91 68.60 2.05 54.17 16 9 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 10 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 11 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 12 N -0.69 -29.91 6.01 -475.64 -2.86 -32.77 16 13 C 0.10 3.44 1.83 44.46 0.08 3.52 16 14 H 0.02 0.60 5.53 -2.39 -0.01 0.58 16 15 C -0.10 -3.63 5.22 31.31 0.16 -3.46 16 16 C -0.11 -2.84 5.31 30.14 0.16 -2.68 16 17 C -0.11 -2.65 4.98 30.20 0.15 -2.50 16 18 C -0.09 -1.76 2.21 -12.65 -0.03 -1.79 16 19 H 0.08 1.43 7.47 -2.39 -0.02 1.41 16 20 C -0.15 -2.43 8.97 71.98 0.65 -1.78 16 21 C -0.11 -2.42 4.44 28.74 0.13 -2.29 16 22 C -0.11 -3.01 5.27 30.20 0.16 -2.85 16 23 H 0.04 1.49 7.42 -2.39 -0.02 1.47 16 24 H 0.03 1.41 7.67 -2.39 -0.02 1.39 16 25 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 26 H 0.26 16.15 6.37 -92.71 -0.59 15.56 16 27 H 0.33 13.33 7.51 -89.69 -0.67 12.66 16 28 H 0.05 2.00 8.12 -2.39 -0.02 1.98 16 29 H 0.02 0.75 7.71 -2.39 -0.02 0.73 16 30 H 0.07 1.73 6.63 -2.39 -0.02 1.72 16 31 H 0.06 1.53 8.14 -2.39 -0.02 1.52 16 32 H 0.08 1.55 7.97 -2.39 -0.02 1.53 16 33 H 0.04 1.21 6.97 -2.39 -0.02 1.19 16 34 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.06 0.92 8.11 -2.39 -0.02 0.90 16 36 H 0.06 0.93 8.12 -2.39 -0.02 0.91 16 37 H 0.08 1.45 8.08 -2.39 -0.02 1.43 16 38 H 0.04 1.15 7.47 -2.39 -0.02 1.13 16 39 H 0.06 1.76 7.26 -2.39 -0.02 1.74 16 40 H 0.08 1.97 6.98 -2.39 -0.02 1.95 16 Total: -1.00 -64.73 297.92 2.86 -61.87 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: 0.49 Total: 20.41 kcal Atomic # 6 Polarization: -47.88 SS G_CDS: 2.88 Total: -45.00 kcal Atomic # 7 Polarization: -88.88 SS G_CDS: -2.57 Total: -91.44 kcal Atomic # 14 Polarization: 52.12 SS G_CDS: 2.05 Total: 54.17 kcal Total: -64.73 2.86 -61.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227308339.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.614 kcal (2) G-P(sol) polarization free energy of solvation -64.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds