Wall clock time and date at job start Mon Mar 30 2020 03:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08989 * 110.43821 * 2 1 4 4 C 1.54267 * 110.48234 * 122.54407 * 2 1 3 5 5 C 1.53882 * 106.59823 * 142.28379 * 4 2 1 6 6 C 1.54272 * 106.59782 * 0.02562 * 5 4 2 7 7 H 1.08997 * 110.48879 * 95.19777 * 6 5 4 8 8 C 1.52997 * 110.48546 * 217.71116 * 6 5 4 9 9 N 1.46903 * 109.47135 * 291.75905 * 8 6 5 10 10 C 1.46893 * 111.00119 * 180.02562 * 9 8 6 11 11 C 1.53000 * 109.47186 * 179.97438 * 10 9 8 12 12 C 1.53001 * 109.47355 * 179.97438 * 11 10 9 13 13 C 1.50694 * 109.47168 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00563 * 0.02562 * 13 12 11 15 15 C 1.37885 * 119.99902 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99913 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99766 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47353 * 269.99586 * 17 15 13 19 19 H 1.48501 * 109.47293 * 30.00037 * 17 15 13 20 20 H 1.48504 * 109.46680 * 149.99835 * 17 15 13 21 21 C 1.54891 * 104.30994 * 336.45385 * 6 5 4 22 22 H 1.09005 * 109.46855 * 298.91397 * 1 2 3 23 23 H 1.09004 * 109.46681 * 58.90888 * 1 2 3 24 24 H 1.08995 * 109.47091 * 178.91064 * 1 2 3 25 25 H 1.08996 * 110.03457 * 23.00336 * 4 2 1 26 26 H 1.08997 * 110.07321 * 261.58907 * 4 2 1 27 27 H 1.08993 * 110.03367 * 240.71223 * 5 4 2 28 28 H 1.09004 * 110.02759 * 119.27912 * 5 4 2 29 29 H 1.08998 * 109.47455 * 171.75821 * 8 6 5 30 30 H 1.09002 * 109.47053 * 51.75104 * 8 6 5 31 31 H 1.00899 * 111.00178 * 56.04251 * 9 8 6 32 32 H 1.09002 * 109.47091 * 59.99841 * 10 9 8 33 33 H 1.08992 * 109.47497 * 299.99732 * 10 9 8 34 34 H 1.09002 * 109.46807 * 60.00192 * 11 10 9 35 35 H 1.08998 * 109.47285 * 299.99794 * 11 10 9 36 36 H 1.09007 * 109.46922 * 59.99890 * 12 11 10 37 37 H 1.09003 * 109.46836 * 300.00646 * 12 11 10 38 38 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 39 39 H 1.08998 * 110.75603 * 156.19362 * 21 6 5 40 40 H 1.09006 * 110.75461 * 279.56183 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0213 0.0000 4 6 2.0698 -0.7774 1.2182 5 6 3.3165 -1.5398 0.7359 6 6 3.4910 -1.1986 -0.7584 7 1 4.1921 -0.3731 -0.8819 8 6 3.9694 -2.4265 -1.5357 9 7 5.3423 -2.7577 -1.1314 10 6 5.8362 -3.9341 -1.8594 11 6 7.2657 -4.2471 -1.4129 12 6 7.7799 -5.4728 -2.1706 13 6 9.1877 -5.7814 -1.7304 14 1 9.6676 -5.1653 -0.9844 15 6 9.8632 -6.8505 -2.2800 16 7 9.2787 -7.6011 -3.1881 17 14 11.6085 -7.2326 -1.7348 18 1 12.5687 -6.5007 -2.5994 19 1 11.7903 -6.8082 -0.3233 20 1 11.8539 -8.6928 -1.8481 21 6 2.0740 -0.7806 -1.2237 22 1 -0.3633 0.4969 0.8996 23 1 -0.3633 0.5307 -0.8801 24 1 -0.3633 -1.0274 -0.0195 25 1 1.3175 -1.4803 1.5759 26 1 2.3410 -0.0840 2.0143 27 1 3.1691 -2.6126 0.8596 28 1 4.1928 -1.2157 1.2974 29 1 3.9472 -2.2116 -2.6041 30 1 3.3139 -3.2705 -1.3210 31 1 5.4016 -2.8981 -0.1340 32 1 5.8269 -3.7292 -2.9299 33 1 5.1937 -4.7887 -1.6475 34 1 7.2753 -4.4519 -0.3423 35 1 7.9080 -3.3925 -1.6251 36 1 7.7702 -5.2684 -3.2413 37 1 7.1374 -6.3273 -1.9580 38 1 9.7540 -8.3529 -3.5750 39 1 2.1299 -0.1370 -2.1016 40 1 1.4592 -1.6578 -1.4251 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230419916.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:50 Heat of formation + Delta-G solvation = -47.876883 kcal Electronic energy + Delta-G solvation = -15146.891334 eV Core-core repulsion = 12766.390603 eV Total energy + Delta-G solvation = -2380.500731 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.94837 -36.12638 -33.62638 -32.04341 -30.49690 -29.19315 -26.70579 -25.05697 -23.39274 -22.10141 -20.40366 -19.98761 -19.37332 -16.46853 -16.23290 -15.49422 -14.72236 -14.54037 -14.24171 -13.70877 -13.61163 -13.38223 -12.97335 -12.81417 -12.17793 -12.09342 -11.71830 -11.35851 -11.11430 -11.02277 -10.84336 -10.78877 -10.69921 -10.60864 -10.51010 -10.46164 -10.38032 -9.64970 -9.28513 -9.01340 -8.31240 -8.10004 -5.96488 -3.98402 3.34598 3.40364 3.44203 4.28206 4.43243 4.49255 4.51046 4.75639 5.06749 5.13911 5.27750 5.32648 5.39237 5.42901 5.47040 5.54733 5.60275 5.66949 5.77140 5.78441 5.88228 5.91098 5.95728 5.96466 6.06968 6.13879 6.27158 6.36743 6.39123 6.76844 6.82481 7.18274 7.41735 7.70164 7.72895 7.88033 8.04365 8.47845 9.08939 9.65361 11.15056 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.080268 B = 0.003472 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 348.745595 B = 8062.192810 C = 8246.263206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 H 0.072 0.928 4 C -0.120 4.120 5 C -0.123 4.123 6 C -0.090 4.090 7 H 0.082 0.918 8 C 0.065 3.935 9 N -0.692 5.692 10 C 0.058 3.942 11 C -0.107 4.107 12 C 0.022 3.978 13 C -0.518 4.518 14 H 0.055 0.945 15 C 0.055 3.945 16 N -0.897 5.897 17 Si 0.892 3.108 18 H -0.280 1.280 19 H -0.274 1.274 20 H -0.287 1.287 21 C -0.115 4.115 22 H 0.052 0.948 23 H 0.053 0.947 24 H 0.054 0.946 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.025 0.975 31 H 0.336 0.664 32 H 0.066 0.934 33 H 0.023 0.977 34 H 0.044 0.956 35 H 0.055 0.945 36 H 0.016 0.984 37 H 0.013 0.987 38 H 0.260 0.740 39 H 0.065 0.935 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.397 13.802 6.253 22.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 H 0.091 0.909 4 C -0.157 4.157 5 C -0.161 4.161 6 C -0.109 4.109 7 H 0.100 0.900 8 C -0.064 4.064 9 N -0.323 5.323 10 C -0.070 4.070 11 C -0.145 4.145 12 C -0.016 4.016 13 C -0.557 4.557 14 H 0.073 0.927 15 C -0.146 4.146 16 N -0.537 5.537 17 Si 0.720 3.280 18 H -0.207 1.207 19 H -0.199 1.199 20 H -0.213 1.213 21 C -0.153 4.153 22 H 0.071 0.929 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.043 0.957 31 H 0.154 0.846 32 H 0.084 0.916 33 H 0.041 0.959 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.034 0.966 37 H 0.032 0.968 38 H 0.069 0.931 39 H 0.084 0.916 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -16.080 14.085 5.709 22.125 hybrid contribution 0.475 -1.076 0.649 1.344 sum -15.605 13.008 6.357 21.287 Atomic orbital electron populations 1.21808 0.95231 1.01720 1.01388 1.21974 0.95226 0.99283 0.95153 0.90949 1.22206 0.97357 0.98743 0.97428 1.22219 0.97807 1.00052 0.95980 1.22021 0.96335 0.98201 0.94324 0.89963 1.21981 0.89205 0.95549 0.99707 1.60556 1.20911 1.40252 1.10556 1.22122 0.97227 0.89258 0.98405 1.21622 0.92837 1.00343 0.99687 1.19068 0.95625 0.91507 0.95388 1.21271 0.99235 1.12415 1.22736 0.92666 1.25040 0.98136 0.96252 0.95156 1.69972 1.37314 1.18204 1.28188 0.86590 0.84969 0.77351 0.79068 1.20654 1.19882 1.21269 1.22618 0.95754 0.99649 0.97269 0.92895 0.92794 0.92681 0.91998 0.92129 0.92077 0.91605 0.91314 0.95675 0.84636 0.91564 0.95918 0.93733 0.92577 0.96592 0.96839 0.93058 0.91607 0.91479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.11 37.16 0.34 -0.70 16 2 C -0.10 -0.81 3.45 -88.90 -0.31 -1.12 16 3 H 0.07 0.59 8.14 -51.94 -0.42 0.17 16 4 C -0.12 -1.03 6.38 -25.61 -0.16 -1.20 16 5 C -0.12 -1.23 5.62 -25.61 -0.14 -1.37 16 6 C -0.09 -0.96 3.10 -88.96 -0.28 -1.24 16 7 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 8 C 0.07 0.83 5.06 -3.82 -0.02 0.81 16 9 N -0.69 -10.59 6.50 -113.79 -0.74 -11.33 16 10 C 0.06 1.06 5.69 -3.83 -0.02 1.04 16 11 C -0.11 -2.30 5.41 -26.73 -0.14 -2.44 16 12 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 13 C -0.52 -15.10 9.11 -34.44 -0.31 -15.41 16 14 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 15 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -27.53 13.29 55.43 0.74 -26.79 16 17 Si 0.89 22.07 29.54 -169.99 -5.02 17.04 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 19 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 C -0.11 -1.05 5.77 -24.67 -0.14 -1.19 16 22 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 23 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.52 7.84 -51.93 -0.41 0.11 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.64 7.74 -51.93 -0.40 0.24 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.03 0.32 8.01 -51.93 -0.42 -0.09 16 31 H 0.34 4.86 8.01 -39.29 -0.31 4.55 16 32 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 36 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 37 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.62 7.97 -51.93 -0.41 0.20 16 LS Contribution 317.53 15.07 4.79 4.79 Total: -1.00 -30.03 317.53 -9.50 -39.53 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -7.84 Total: -2.38 kcal Atomic # 6 Polarization: -19.43 SS G_CDS: -1.43 Total: -20.86 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: 0.00 Total: -38.12 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.03 -9.50 -39.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230419916.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.347 kcal (2) G-P(sol) polarization free energy of solvation -30.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds