Wall clock time and date at job start Mon Mar 30 2020 03:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08989 * 110.43821 * 2 1 4 4 C 1.54267 * 110.48234 * 122.54407 * 2 1 3 5 5 C 1.53882 * 106.59823 * 142.28379 * 4 2 1 6 6 C 1.54272 * 106.59782 * 0.02562 * 5 4 2 7 7 H 1.08997 * 110.48879 * 95.19777 * 6 5 4 8 8 C 1.52997 * 110.48546 * 217.71116 * 6 5 4 9 9 N 1.46903 * 109.47135 * 291.75905 * 8 6 5 10 10 C 1.46893 * 111.00119 * 180.02562 * 9 8 6 11 11 C 1.53000 * 109.47186 * 179.97438 * 10 9 8 12 12 C 1.53001 * 109.47355 * 179.97438 * 11 10 9 13 13 C 1.50694 * 109.47168 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00563 * 0.02562 * 13 12 11 15 15 C 1.37885 * 119.99902 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99913 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99766 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47353 * 269.99586 * 17 15 13 19 19 H 1.48501 * 109.47293 * 30.00037 * 17 15 13 20 20 H 1.48504 * 109.46680 * 149.99835 * 17 15 13 21 21 C 1.54891 * 104.30994 * 336.45385 * 6 5 4 22 22 H 1.09005 * 109.46855 * 298.91397 * 1 2 3 23 23 H 1.09004 * 109.46681 * 58.90888 * 1 2 3 24 24 H 1.08995 * 109.47091 * 178.91064 * 1 2 3 25 25 H 1.08996 * 110.03457 * 23.00336 * 4 2 1 26 26 H 1.08997 * 110.07321 * 261.58907 * 4 2 1 27 27 H 1.08993 * 110.03367 * 240.71223 * 5 4 2 28 28 H 1.09004 * 110.02759 * 119.27912 * 5 4 2 29 29 H 1.08998 * 109.47455 * 171.75821 * 8 6 5 30 30 H 1.09002 * 109.47053 * 51.75104 * 8 6 5 31 31 H 1.00899 * 111.00178 * 56.04251 * 9 8 6 32 32 H 1.09002 * 109.47091 * 59.99841 * 10 9 8 33 33 H 1.08992 * 109.47497 * 299.99732 * 10 9 8 34 34 H 1.09002 * 109.46807 * 60.00192 * 11 10 9 35 35 H 1.08998 * 109.47285 * 299.99794 * 11 10 9 36 36 H 1.09007 * 109.46922 * 59.99890 * 12 11 10 37 37 H 1.09003 * 109.46836 * 300.00646 * 12 11 10 38 38 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 39 39 H 1.08998 * 110.75603 * 156.19362 * 21 6 5 40 40 H 1.09006 * 110.75461 * 279.56183 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0213 0.0000 4 6 2.0698 -0.7774 1.2182 5 6 3.3165 -1.5398 0.7359 6 6 3.4910 -1.1986 -0.7584 7 1 4.1921 -0.3731 -0.8819 8 6 3.9694 -2.4265 -1.5357 9 7 5.3423 -2.7577 -1.1314 10 6 5.8362 -3.9341 -1.8594 11 6 7.2657 -4.2471 -1.4129 12 6 7.7799 -5.4728 -2.1706 13 6 9.1877 -5.7814 -1.7304 14 1 9.6676 -5.1653 -0.9844 15 6 9.8632 -6.8505 -2.2800 16 7 9.2787 -7.6011 -3.1881 17 14 11.6085 -7.2326 -1.7348 18 1 12.5687 -6.5007 -2.5994 19 1 11.7903 -6.8082 -0.3233 20 1 11.8539 -8.6928 -1.8481 21 6 2.0740 -0.7806 -1.2237 22 1 -0.3633 0.4969 0.8996 23 1 -0.3633 0.5307 -0.8801 24 1 -0.3633 -1.0274 -0.0195 25 1 1.3175 -1.4803 1.5759 26 1 2.3410 -0.0840 2.0143 27 1 3.1691 -2.6126 0.8596 28 1 4.1928 -1.2157 1.2974 29 1 3.9472 -2.2116 -2.6041 30 1 3.3139 -3.2705 -1.3210 31 1 5.4016 -2.8981 -0.1340 32 1 5.8269 -3.7292 -2.9299 33 1 5.1937 -4.7887 -1.6475 34 1 7.2753 -4.4519 -0.3423 35 1 7.9080 -3.3925 -1.6251 36 1 7.7702 -5.2684 -3.2413 37 1 7.1374 -6.3273 -1.9580 38 1 9.7540 -8.3529 -3.5750 39 1 2.1299 -0.1370 -2.1016 40 1 1.4592 -1.6578 -1.4251 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230419916.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:50 Heat of formation + Delta-G solvation = -64.922139 kcal Electronic energy + Delta-G solvation = -15147.630471 eV Core-core repulsion = 12766.390603 eV Total energy + Delta-G solvation = -2381.239869 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.77291 -37.48608 -35.49276 -33.59321 -31.76494 -30.10444 -28.26371 -26.25671 -24.57550 -23.64826 -21.98707 -20.93809 -20.22153 -18.49210 -17.37980 -16.59855 -16.54993 -15.76714 -15.59340 -14.96043 -14.50290 -14.39932 -14.16120 -13.88977 -13.71480 -13.51075 -13.14653 -12.77376 -12.63151 -12.47316 -12.32605 -11.88111 -11.75074 -11.60358 -11.59437 -11.44145 -11.39107 -11.34296 -11.20776 -10.98648 -10.56200 -9.37461 -8.20926 -6.32235 1.39733 1.41588 1.52790 2.40735 3.12045 3.20767 3.66612 3.73646 3.91863 4.18679 4.25562 4.37162 4.43241 4.51988 4.56546 4.69352 4.72944 4.74964 4.78628 4.82363 4.87742 4.96510 5.01984 5.09189 5.14496 5.17553 5.21907 5.25635 5.36815 5.38968 5.50720 5.54113 5.60995 5.73595 5.84676 6.07235 6.26524 6.49027 6.84691 7.37063 8.91194 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.080268 B = 0.003472 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 348.745595 B = 8062.192810 C = 8246.263206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.096 4.096 3 H 0.075 0.925 4 C -0.118 4.118 5 C -0.123 4.123 6 C -0.086 4.086 7 H 0.075 0.925 8 C 0.066 3.934 9 N -0.692 5.692 10 C 0.071 3.929 11 C -0.092 4.092 12 C 0.025 3.975 13 C -0.544 4.544 14 H 0.060 0.940 15 C -0.003 4.003 16 N -0.935 5.935 17 Si 0.967 3.033 18 H -0.272 1.272 19 H -0.263 1.263 20 H -0.281 1.281 21 C -0.112 4.112 22 H 0.059 0.941 23 H 0.058 0.942 24 H 0.053 0.947 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.027 0.973 31 H 0.342 0.658 32 H 0.060 0.940 33 H 0.021 0.979 34 H 0.050 0.950 35 H 0.052 0.948 36 H -0.009 1.009 37 H -0.010 1.010 38 H 0.264 0.736 39 H 0.070 0.930 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.480 14.746 7.272 23.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.114 4.114 3 H 0.093 0.907 4 C -0.155 4.155 5 C -0.161 4.161 6 C -0.104 4.104 7 H 0.094 0.906 8 C -0.063 4.063 9 N -0.324 5.324 10 C -0.058 4.058 11 C -0.130 4.130 12 C -0.013 4.013 13 C -0.582 4.582 14 H 0.078 0.922 15 C -0.200 4.200 16 N -0.575 5.575 17 Si 0.792 3.208 18 H -0.197 1.197 19 H -0.187 1.187 20 H -0.206 1.206 21 C -0.150 4.150 22 H 0.078 0.922 23 H 0.077 0.923 24 H 0.072 0.928 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.045 0.955 31 H 0.161 0.839 32 H 0.079 0.921 33 H 0.039 0.961 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.009 0.991 37 H 0.009 0.991 38 H 0.073 0.927 39 H 0.089 0.911 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -16.178 15.048 6.739 23.099 hybrid contribution 0.467 -1.368 0.310 1.479 sum -15.711 13.680 7.049 21.992 Atomic orbital electron populations 1.21790 0.94307 1.01833 1.02031 1.21970 0.95989 0.99151 0.94317 0.90651 1.22202 0.96719 0.98838 0.97786 1.22213 0.98533 0.99898 0.95437 1.21959 0.97081 0.96780 0.94618 0.90619 1.22042 0.87720 0.96594 0.99941 1.60491 1.22681 1.38416 1.10774 1.21837 0.95237 0.90428 0.98339 1.21378 0.94731 0.97725 0.99200 1.18973 0.94880 0.92909 0.94500 1.21709 1.00470 1.12925 1.23119 0.92204 1.26024 1.03025 0.95940 0.95016 1.70103 1.39379 1.18749 1.29270 0.85412 0.78965 0.77342 0.79122 1.19701 1.18687 1.20613 1.22607 0.94598 0.99878 0.97943 0.92165 0.92298 0.92829 0.91672 0.91442 0.92674 0.91790 0.91595 0.95505 0.83936 0.92110 0.96094 0.93148 0.92874 0.99066 0.99119 0.92726 0.91122 0.91518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.11 71.98 0.66 -1.10 16 2 C -0.10 -1.39 3.45 -9.68 -0.03 -1.43 16 3 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 4 C -0.12 -1.82 6.38 31.32 0.20 -1.62 16 5 C -0.12 -2.29 5.62 31.32 0.18 -2.11 16 6 C -0.09 -1.72 3.10 -9.72 -0.03 -1.75 16 7 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 8 C 0.07 1.63 5.06 86.30 0.44 2.07 16 9 N -0.69 -20.61 6.50 -513.91 -3.34 -23.95 16 10 C 0.07 2.56 5.69 86.30 0.49 3.05 16 11 C -0.09 -3.98 5.41 30.59 0.17 -3.82 16 12 C 0.03 1.37 4.97 29.85 0.15 1.52 16 13 C -0.54 -31.96 9.11 25.60 0.23 -31.73 16 14 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 15 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 16 N -0.93 -58.08 13.29 21.45 0.28 -57.80 16 17 Si 0.97 45.06 29.54 68.60 2.03 47.09 16 18 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 19 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 20 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 21 C -0.11 -1.87 5.77 31.93 0.18 -1.68 16 22 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 23 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 24 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.06 0.97 7.84 -2.39 -0.02 0.95 16 26 H 0.07 0.95 8.14 -2.39 -0.02 0.94 16 27 H 0.05 1.09 7.74 -2.39 -0.02 1.07 16 28 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.03 0.66 8.01 -2.39 -0.02 0.64 16 31 H 0.34 9.53 8.01 -89.69 -0.72 8.81 16 32 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 36 H -0.01 -0.53 8.14 -2.38 -0.02 -0.55 16 37 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 38 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 39 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.07 1.12 7.97 -2.38 -0.02 1.11 16 Total: -1.00 -63.55 317.53 2.30 -61.24 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: 0.24 Total: 11.70 kcal Atomic # 6 Polarization: -41.38 SS G_CDS: 3.09 Total: -38.29 kcal Atomic # 7 Polarization: -78.69 SS G_CDS: -3.06 Total: -81.74 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -63.55 2.30 -61.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230419916.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.677 kcal (2) G-P(sol) polarization free energy of solvation -63.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds