Wall clock time and date at job start Mon Mar 30 2020 03:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09008 * 110.05150 * 2 1 4 4 C 1.54264 * 110.03549 * 121.41277 * 2 1 3 5 5 C 1.55031 * 104.28131 * 142.80374 * 4 2 1 6 6 C 1.54894 * 102.68169 * 322.23389 * 5 4 2 7 7 H 1.08992 * 110.48872 * 279.02958 * 6 5 4 8 8 C 1.53007 * 110.48132 * 156.51290 * 6 5 4 9 9 N 1.46898 * 109.46771 * 68.25048 * 8 6 5 10 10 C 1.46906 * 110.99895 * 179.97438 * 9 8 6 11 11 C 1.52999 * 109.46904 * 179.97438 * 10 9 8 12 12 C 1.53006 * 109.46626 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.46866 * 179.97438 * 12 11 10 14 14 H 1.08003 * 119.99963 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00270 * 179.97438 * 13 12 11 16 16 N 1.31522 * 119.99835 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00496 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47183 * 60.00274 * 17 15 13 19 19 H 1.48496 * 109.47425 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47216 * 300.00267 * 17 15 13 21 21 C 1.53870 * 110.03474 * 238.58338 * 2 1 3 22 22 H 1.09006 * 109.47025 * 181.42036 * 1 2 3 23 23 H 1.09000 * 109.47313 * 301.41138 * 1 2 3 24 24 H 1.08998 * 109.47561 * 61.41623 * 1 2 3 25 25 H 1.08994 * 110.49147 * 261.57680 * 4 2 1 26 26 H 1.09004 * 110.48473 * 24.08392 * 4 2 1 27 27 H 1.08994 * 110.87796 * 203.90305 * 5 4 2 28 28 H 1.08995 * 110.69665 * 80.48879 * 5 4 2 29 29 H 1.08995 * 109.47532 * 308.24387 * 8 6 5 30 30 H 1.09005 * 109.46478 * 188.24100 * 8 6 5 31 31 H 1.00896 * 111.00406 * 56.03887 * 9 8 6 32 32 H 1.08993 * 109.47034 * 59.99137 * 10 9 8 33 33 H 1.09000 * 109.46693 * 299.99478 * 10 9 8 34 34 H 1.08993 * 109.47839 * 59.99803 * 11 10 9 35 35 H 1.09000 * 109.47160 * 299.99365 * 11 10 9 36 36 H 1.09000 * 109.47050 * 299.99699 * 12 11 10 37 37 H 1.09001 * 109.46801 * 59.99811 * 12 11 10 38 38 H 0.96992 * 120.00038 * 180.02562 * 16 15 13 39 39 H 1.08996 * 110.03427 * 121.42633 * 21 2 1 40 40 H 1.09010 * 110.07079 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9037 1.0240 0.0000 4 6 2.0585 -0.7554 1.2369 5 6 3.3139 -1.5041 0.7202 6 6 2.8875 -1.9406 -0.7035 7 1 2.2779 -2.8430 -0.6593 8 6 4.1176 -2.1694 -1.5842 9 7 4.8501 -3.3491 -1.1052 10 6 6.0400 -3.6004 -1.9293 11 6 6.7755 -4.8334 -1.4005 12 6 8.0144 -5.0954 -2.2593 13 6 8.7392 -6.3095 -1.7381 14 1 8.3549 -6.8408 -0.8799 15 6 9.8929 -6.7421 -2.3567 16 7 10.3612 -6.0948 -3.4015 17 14 10.7917 -8.2466 -1.7103 18 1 9.8900 -9.4251 -1.7687 19 1 11.9941 -8.5010 -2.5438 20 1 11.2060 -8.0095 -0.3040 21 6 2.0571 -0.7535 -1.2337 22 1 -0.3633 -1.0274 0.0255 23 1 -0.3634 0.5356 0.8770 24 1 -0.3634 0.4917 -0.9024 25 1 2.3297 -0.0536 2.0255 26 1 1.3134 -1.4642 1.5981 27 1 3.5313 -2.3727 1.3416 28 1 4.1721 -0.8335 0.6779 29 1 4.7662 -1.2948 -1.5367 30 1 3.8014 -2.3318 -2.6147 31 1 4.2511 -4.1606 -1.0785 32 1 6.7021 -2.7358 -1.8846 33 1 5.7368 -3.7729 -2.9620 34 1 6.1136 -5.6982 -1.4448 35 1 7.0787 -4.6605 -0.3679 36 1 7.7108 -5.2685 -3.2917 37 1 8.6765 -4.2307 -2.2152 38 1 11.1726 -6.3994 -3.8369 39 1 2.6867 -0.0953 -1.8324 40 1 1.2234 -1.1192 -1.8332 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230419921.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:55 Heat of formation + Delta-G solvation = -47.077135 kcal Electronic energy + Delta-G solvation = -15148.956516 eV Core-core repulsion = 12768.490464 eV Total energy + Delta-G solvation = -2380.466051 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.90238 -36.14021 -33.61461 -32.01494 -30.48517 -29.12428 -26.65520 -25.07057 -23.29949 -22.04222 -20.52222 -20.02682 -19.38206 -16.28777 -15.88128 -15.60824 -14.97084 -14.48663 -14.00103 -13.86866 -13.60265 -13.43221 -13.21626 -12.44617 -12.22162 -11.89840 -11.58301 -11.45279 -11.07500 -10.87566 -10.82898 -10.80156 -10.66800 -10.64365 -10.52802 -10.44445 -10.39876 -9.64368 -9.28407 -9.02293 -8.30904 -8.08112 -5.96270 -3.98346 3.36063 3.39943 3.42864 4.29001 4.49229 4.53330 4.57828 4.73026 5.04514 5.23411 5.27868 5.38555 5.39301 5.44814 5.55513 5.56965 5.62005 5.71855 5.77711 5.85115 5.92136 5.94667 5.97984 6.01026 6.06942 6.26706 6.32206 6.37465 6.42330 6.76962 6.82578 7.18359 7.41539 7.69836 7.72711 7.88137 8.04490 8.47843 9.08805 9.65388 11.15249 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.079559 B = 0.003482 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 351.857185 B = 8040.548880 C = 8229.112386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.097 4.097 3 H 0.068 0.932 4 C -0.124 4.124 5 C -0.106 4.106 6 C -0.089 4.089 7 H 0.070 0.930 8 C 0.065 3.935 9 N -0.690 5.690 10 C 0.059 3.941 11 C -0.107 4.107 12 C 0.022 3.978 13 C -0.519 4.519 14 H 0.055 0.945 15 C 0.055 3.945 16 N -0.897 5.897 17 Si 0.893 3.107 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.277 1.277 21 C -0.116 4.116 22 H 0.054 0.946 23 H 0.051 0.949 24 H 0.051 0.949 25 H 0.060 0.940 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.023 0.977 31 H 0.335 0.665 32 H 0.065 0.935 33 H 0.022 0.978 34 H 0.044 0.956 35 H 0.055 0.945 36 H 0.013 0.987 37 H 0.016 0.984 38 H 0.260 0.740 39 H 0.063 0.937 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.085 11.413 5.667 22.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 H 0.087 0.913 4 C -0.162 4.162 5 C -0.143 4.143 6 C -0.108 4.108 7 H 0.088 0.912 8 C -0.065 4.065 9 N -0.320 5.320 10 C -0.070 4.070 11 C -0.145 4.145 12 C -0.016 4.016 13 C -0.557 4.557 14 H 0.073 0.927 15 C -0.146 4.146 16 N -0.537 5.537 17 Si 0.721 3.279 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.155 4.155 22 H 0.073 0.927 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.079 0.921 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.042 0.958 31 H 0.153 0.847 32 H 0.084 0.916 33 H 0.041 0.959 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.031 0.969 37 H 0.034 0.966 38 H 0.070 0.930 39 H 0.082 0.918 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -17.586 11.773 6.008 22.000 hybrid contribution 0.176 -1.155 -0.633 1.329 sum -17.411 10.618 5.375 21.089 Atomic orbital electron populations 1.21889 0.95346 1.01653 1.01271 1.21732 0.95337 0.99344 0.95170 0.91339 1.22521 0.97913 0.98869 0.96871 1.22424 0.96710 0.99840 0.95369 1.21981 0.95459 0.97764 0.95605 0.91150 1.22009 0.94270 0.94753 0.95431 1.60551 1.09603 1.06683 1.55185 1.22118 0.91184 0.99947 0.93716 1.21617 0.98129 0.94146 1.00566 1.19063 0.91245 0.96628 0.94620 1.21235 1.08630 1.11967 1.13909 0.92720 1.25035 0.97380 0.97093 0.95046 1.69960 1.22495 1.40192 1.21049 0.86649 0.79104 0.83316 0.78876 1.20273 1.21323 1.20216 1.22261 0.99111 0.96897 0.97189 0.92671 0.92962 0.92946 0.92076 0.91834 0.91116 0.91509 0.91244 0.95847 0.84744 0.91610 0.95939 0.93726 0.92587 0.96853 0.96611 0.92997 0.91820 0.91960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 8.85 37.16 0.33 -0.74 16 2 C -0.10 -0.83 3.50 -89.51 -0.31 -1.14 16 3 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 4 C -0.12 -1.12 6.36 -25.00 -0.16 -1.28 16 5 C -0.11 -1.13 6.20 -24.66 -0.15 -1.28 16 6 C -0.09 -0.95 3.03 -88.95 -0.27 -1.22 16 7 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 8 C 0.06 0.82 4.97 -3.82 -0.02 0.80 16 9 N -0.69 -10.36 6.35 -113.78 -0.72 -11.09 16 10 C 0.06 1.06 5.68 -3.82 -0.02 1.04 16 11 C -0.11 -2.28 5.41 -26.73 -0.14 -2.42 16 12 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 13 C -0.52 -15.10 9.11 -34.44 -0.31 -15.42 16 14 H 0.05 1.54 7.74 -52.48 -0.41 1.14 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 16 N -0.90 -27.53 13.29 55.43 0.74 -26.79 16 17 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 C -0.12 -1.08 6.03 -25.62 -0.15 -1.23 16 22 H 0.05 0.41 8.12 -51.93 -0.42 -0.01 16 23 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 24 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.55 7.83 -51.93 -0.41 0.15 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.07 0.76 8.00 -51.93 -0.42 0.35 16 29 H 0.07 0.91 8.06 -51.93 -0.42 0.49 16 30 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.34 4.75 8.73 -39.29 -0.34 4.41 16 32 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 36 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 39 H 0.06 0.59 7.84 -51.93 -0.41 0.19 16 40 H 0.06 0.55 7.68 -51.92 -0.40 0.15 16 LS Contribution 318.22 15.07 4.80 4.80 Total: -1.00 -29.88 318.22 -9.52 -39.39 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -7.85 Total: -2.42 kcal Atomic # 6 Polarization: -19.47 SS G_CDS: -1.46 Total: -20.92 kcal Atomic # 7 Polarization: -37.89 SS G_CDS: 0.01 Total: -37.88 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.88 -9.52 -39.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230419921.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.682 kcal (2) G-P(sol) polarization free energy of solvation -29.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds