Wall clock time and date at job start Mon Mar 30 2020 03:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09008 * 110.05150 * 2 1 4 4 C 1.54264 * 110.03549 * 121.41277 * 2 1 3 5 5 C 1.55031 * 104.28131 * 142.80374 * 4 2 1 6 6 C 1.54894 * 102.68169 * 322.23389 * 5 4 2 7 7 H 1.08992 * 110.48872 * 279.02958 * 6 5 4 8 8 C 1.53007 * 110.48132 * 156.51290 * 6 5 4 9 9 N 1.46898 * 109.46771 * 68.25048 * 8 6 5 10 10 C 1.46906 * 110.99895 * 179.97438 * 9 8 6 11 11 C 1.52999 * 109.46904 * 179.97438 * 10 9 8 12 12 C 1.53006 * 109.46626 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.46866 * 179.97438 * 12 11 10 14 14 H 1.08003 * 119.99963 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00270 * 179.97438 * 13 12 11 16 16 N 1.31522 * 119.99835 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00496 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47183 * 60.00274 * 17 15 13 19 19 H 1.48496 * 109.47425 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47216 * 300.00267 * 17 15 13 21 21 C 1.53870 * 110.03474 * 238.58338 * 2 1 3 22 22 H 1.09006 * 109.47025 * 181.42036 * 1 2 3 23 23 H 1.09000 * 109.47313 * 301.41138 * 1 2 3 24 24 H 1.08998 * 109.47561 * 61.41623 * 1 2 3 25 25 H 1.08994 * 110.49147 * 261.57680 * 4 2 1 26 26 H 1.09004 * 110.48473 * 24.08392 * 4 2 1 27 27 H 1.08994 * 110.87796 * 203.90305 * 5 4 2 28 28 H 1.08995 * 110.69665 * 80.48879 * 5 4 2 29 29 H 1.08995 * 109.47532 * 308.24387 * 8 6 5 30 30 H 1.09005 * 109.46478 * 188.24100 * 8 6 5 31 31 H 1.00896 * 111.00406 * 56.03887 * 9 8 6 32 32 H 1.08993 * 109.47034 * 59.99137 * 10 9 8 33 33 H 1.09000 * 109.46693 * 299.99478 * 10 9 8 34 34 H 1.08993 * 109.47839 * 59.99803 * 11 10 9 35 35 H 1.09000 * 109.47160 * 299.99365 * 11 10 9 36 36 H 1.09000 * 109.47050 * 299.99699 * 12 11 10 37 37 H 1.09001 * 109.46801 * 59.99811 * 12 11 10 38 38 H 0.96992 * 120.00038 * 180.02562 * 16 15 13 39 39 H 1.08996 * 110.03427 * 121.42633 * 21 2 1 40 40 H 1.09010 * 110.07079 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9037 1.0240 0.0000 4 6 2.0585 -0.7554 1.2369 5 6 3.3139 -1.5041 0.7202 6 6 2.8875 -1.9406 -0.7035 7 1 2.2779 -2.8430 -0.6593 8 6 4.1176 -2.1694 -1.5842 9 7 4.8501 -3.3491 -1.1052 10 6 6.0400 -3.6004 -1.9293 11 6 6.7755 -4.8334 -1.4005 12 6 8.0144 -5.0954 -2.2593 13 6 8.7392 -6.3095 -1.7381 14 1 8.3549 -6.8408 -0.8799 15 6 9.8929 -6.7421 -2.3567 16 7 10.3612 -6.0948 -3.4015 17 14 10.7917 -8.2466 -1.7103 18 1 9.8900 -9.4251 -1.7687 19 1 11.9941 -8.5010 -2.5438 20 1 11.2060 -8.0095 -0.3040 21 6 2.0571 -0.7535 -1.2337 22 1 -0.3633 -1.0274 0.0255 23 1 -0.3634 0.5356 0.8770 24 1 -0.3634 0.4917 -0.9024 25 1 2.3297 -0.0536 2.0255 26 1 1.3134 -1.4642 1.5981 27 1 3.5313 -2.3727 1.3416 28 1 4.1721 -0.8335 0.6779 29 1 4.7662 -1.2948 -1.5367 30 1 3.8014 -2.3318 -2.6147 31 1 4.2511 -4.1606 -1.0785 32 1 6.7021 -2.7358 -1.8846 33 1 5.7368 -3.7729 -2.9620 34 1 6.1136 -5.6982 -1.4448 35 1 7.0787 -4.6605 -0.3679 36 1 7.7108 -5.2685 -3.2917 37 1 8.6765 -4.2307 -2.2152 38 1 11.1726 -6.3994 -3.8369 39 1 2.6867 -0.0953 -1.8324 40 1 1.2234 -1.1192 -1.8332 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230419921.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:55 Heat of formation + Delta-G solvation = -63.987737 kcal Electronic energy + Delta-G solvation = -15149.689814 eV Core-core repulsion = 12768.490464 eV Total energy + Delta-G solvation = -2381.199350 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.73529 -37.50138 -35.48823 -33.57239 -31.75143 -30.06535 -28.22162 -26.23828 -24.57391 -23.52422 -22.02895 -21.10043 -20.21648 -18.47803 -16.97213 -16.69643 -16.45401 -16.02101 -15.20718 -15.13842 -14.81946 -14.29008 -14.21970 -13.98894 -13.55155 -13.29059 -13.10546 -12.75499 -12.59464 -12.48152 -12.29562 -11.86819 -11.71469 -11.60185 -11.53070 -11.49603 -11.40411 -11.33829 -11.19952 -10.99822 -10.55494 -9.33268 -8.20583 -6.32050 1.39731 1.43344 1.51293 2.40925 3.12272 3.21094 3.76060 3.78551 3.86788 4.17072 4.26019 4.38903 4.47438 4.58736 4.64339 4.67147 4.69889 4.74413 4.81890 4.83754 4.90324 4.99313 5.06609 5.10516 5.14270 5.19831 5.24609 5.29289 5.36154 5.45782 5.51156 5.57306 5.62453 5.74215 5.85061 6.07947 6.26801 6.51017 6.84821 7.37251 8.91345 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.079559 B = 0.003482 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 351.857185 B = 8040.548880 C = 8229.112386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.096 4.096 3 H 0.070 0.930 4 C -0.120 4.120 5 C -0.107 4.107 6 C -0.084 4.084 7 H 0.073 0.927 8 C 0.066 3.934 9 N -0.689 5.689 10 C 0.072 3.928 11 C -0.092 4.092 12 C 0.025 3.975 13 C -0.545 4.545 14 H 0.060 0.940 15 C -0.002 4.002 16 N -0.935 5.935 17 Si 0.967 3.033 18 H -0.266 1.266 19 H -0.282 1.282 20 H -0.267 1.267 21 C -0.114 4.114 22 H 0.054 0.946 23 H 0.058 0.942 24 H 0.057 0.943 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.026 0.974 31 H 0.343 0.657 32 H 0.058 0.942 33 H 0.021 0.979 34 H 0.051 0.949 35 H 0.052 0.948 36 H -0.010 1.010 37 H -0.010 1.010 38 H 0.264 0.736 39 H 0.062 0.938 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.209 11.119 6.557 23.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.115 4.115 3 H 0.089 0.911 4 C -0.158 4.158 5 C -0.145 4.145 6 C -0.103 4.103 7 H 0.092 0.908 8 C -0.063 4.063 9 N -0.320 5.320 10 C -0.057 4.057 11 C -0.130 4.130 12 C -0.012 4.012 13 C -0.583 4.583 14 H 0.078 0.922 15 C -0.200 4.200 16 N -0.575 5.575 17 Si 0.791 3.209 18 H -0.191 1.191 19 H -0.207 1.207 20 H -0.191 1.191 21 C -0.152 4.152 22 H 0.073 0.927 23 H 0.077 0.923 24 H 0.076 0.924 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.045 0.955 31 H 0.161 0.839 32 H 0.077 0.923 33 H 0.039 0.961 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.009 0.991 37 H 0.009 0.991 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -18.735 11.486 6.908 23.035 hybrid contribution 0.520 -1.026 -0.926 1.477 sum -18.215 10.460 5.981 21.839 Atomic orbital electron populations 1.21868 0.94323 1.01843 1.01903 1.21731 0.96184 0.99203 0.94372 0.91114 1.22496 0.97066 0.98929 0.97259 1.22399 0.97264 0.99458 0.95388 1.21940 0.94630 0.98591 0.95168 0.90843 1.22056 0.94769 0.93365 0.96078 1.60475 1.09263 1.07798 1.54490 1.21822 0.92127 0.97963 0.93825 1.21370 0.96319 0.96049 0.99229 1.18971 0.92913 0.95077 0.94289 1.21688 1.09407 1.12911 1.14323 0.92180 1.26022 0.98292 1.00531 0.95142 1.70096 1.23066 1.42032 1.22324 0.85470 0.77775 0.79122 0.78507 1.19056 1.20729 1.19149 1.22251 0.99070 0.96276 0.97624 0.92694 0.92297 0.92410 0.91520 0.91368 0.92127 0.92550 0.91757 0.95530 0.83931 0.92296 0.96104 0.93070 0.92925 0.99139 0.99142 0.92724 0.91945 0.91206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 8.85 71.98 0.64 -1.15 16 2 C -0.10 -1.45 3.50 -10.07 -0.04 -1.49 16 3 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 4 C -0.12 -1.95 6.36 31.72 0.20 -1.75 16 5 C -0.11 -2.19 6.20 31.94 0.20 -1.99 16 6 C -0.08 -1.68 3.03 -9.71 -0.03 -1.71 16 7 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 8 C 0.07 1.62 4.97 86.31 0.43 2.05 16 9 N -0.69 -20.10 6.35 -513.88 -3.26 -23.37 16 10 C 0.07 2.57 5.68 86.30 0.49 3.07 16 11 C -0.09 -3.93 5.41 30.60 0.17 -3.76 16 12 C 0.03 1.37 4.97 29.85 0.15 1.52 16 13 C -0.55 -31.99 9.11 25.60 0.23 -31.76 16 14 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 15 C 0.00 -0.14 5.46 84.65 0.46 0.33 16 16 N -0.93 -58.12 13.29 21.45 0.28 -57.84 16 17 Si 0.97 45.02 29.54 68.60 2.03 47.05 16 18 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 19 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 20 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 21 C -0.11 -1.91 6.03 31.32 0.19 -1.72 16 22 H 0.05 0.70 8.12 -2.38 -0.02 0.68 16 23 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 24 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 25 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.07 1.05 7.83 -2.38 -0.02 1.04 16 27 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.06 1.25 8.00 -2.39 -0.02 1.24 16 29 H 0.06 1.64 8.06 -2.39 -0.02 1.62 16 30 H 0.03 0.64 8.14 -2.38 -0.02 0.62 16 31 H 0.34 9.25 8.73 -89.70 -0.78 8.47 16 32 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 36 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 37 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 38 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 39 H 0.06 1.06 7.84 -2.39 -0.02 1.05 16 40 H 0.07 1.07 7.68 -2.38 -0.02 1.06 16 Total: -1.00 -63.41 318.22 2.32 -61.09 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: 0.18 Total: 11.44 kcal Atomic # 6 Polarization: -41.46 SS G_CDS: 3.09 Total: -38.37 kcal Atomic # 7 Polarization: -78.23 SS G_CDS: -2.98 Total: -81.20 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -63.41 2.32 -61.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230419921.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.897 kcal (2) G-P(sol) polarization free energy of solvation -63.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds