Wall clock time and date at job start Mon Mar 30 2020 03:23:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.09001 * 110.05681 * 2 1
4 4 C 1.54266 * 110.03378 * 238.57834 * 2 1 3
5 5 C 1.54891 * 104.31343 * 217.17258 * 4 2 1
6 6 C 1.54889 * 102.74891 * 37.87666 * 5 4 2
7 7 C 1.54097 * 110.15985 * 121.46414 * 2 1 3
8 8 H 1.09001 * 110.11088 * 238.46601 * 7 2 1
9 9 C 1.52995 * 109.92546 * 359.88152 * 7 2 1
10 10 N 1.46904 * 109.47117 * 183.58920 * 9 7 2
11 11 C 1.46894 * 111.00499 * 179.97438 * 10 9 7
12 12 C 1.52994 * 109.47325 * 179.97438 * 11 10 9
13 13 C 1.52999 * 109.47305 * 179.97438 * 12 11 10
14 14 C 1.50696 * 109.47492 * 179.97438 * 13 12 11
15 15 H 1.08005 * 119.99972 * 0.02562 * 14 13 12
16 16 C 1.37879 * 120.00274 * 180.02562 * 14 13 12
17 17 N 1.31516 * 119.99812 * 180.02562 * 16 14 13
18 18 Si 1.86790 * 119.99857 * 0.02562 * 16 14 13
19 19 H 1.48495 * 109.47454 * 90.00109 * 18 16 14
20 20 H 1.48504 * 109.47300 * 209.99826 * 18 16 14
21 21 H 1.48502 * 109.47344 * 329.99813 * 18 16 14
22 22 H 1.09001 * 109.47114 * 179.97438 * 1 2 3
23 23 H 1.09003 * 109.46998 * 299.96736 * 1 2 3
24 24 H 1.08992 * 109.46948 * 59.96913 * 1 2 3
25 25 H 1.09002 * 110.48609 * 98.42671 * 4 2 1
26 26 H 1.08998 * 110.48769 * 335.91764 * 4 2 1
27 27 H 1.08998 * 110.75544 * 156.19347 * 5 4 2
28 28 H 1.09003 * 110.75304 * 279.56090 * 5 4 2
29 29 H 1.08996 * 110.48711 * 80.73713 * 6 5 4
30 30 H 1.09003 * 110.48476 * 203.24683 * 6 5 4
31 31 H 1.09003 * 109.47414 * 303.58068 * 9 7 2
32 32 H 1.08999 * 109.47629 * 63.58567 * 9 7 2
33 33 H 1.00909 * 110.99529 * 303.95469 * 10 9 7
34 34 H 1.09004 * 109.46998 * 299.99860 * 11 10 9
35 35 H 1.08995 * 109.47110 * 59.99255 * 11 10 9
36 36 H 1.08994 * 109.47187 * 299.99891 * 12 11 10
37 37 H 1.09007 * 109.47380 * 60.00152 * 12 11 10
38 38 H 1.08994 * 109.47312 * 300.00307 * 13 12 11
39 39 H 1.09009 * 109.46794 * 60.00346 * 13 12 11
40 40 H 0.97003 * 120.00065 * 180.02562 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9038 1.0239 0.0000
4 6 2.0585 -0.7556 -1.2368
5 6 3.3132 -1.5034 -0.7214
6 6 2.8884 -1.9433 0.7016
7 6 2.0611 -0.7551 1.2339
8 1 2.6928 -0.0983 1.8320
9 6 0.8905 -1.2667 2.0757
10 7 1.4062 -1.9094 3.2920
11 6 0.3080 -2.4135 4.1272
12 6 0.8831 -3.0750 5.3812
13 6 -0.2608 -3.5995 6.2514
14 6 0.3056 -4.2516 7.4862
15 1 1.3747 -4.2879 7.6357
16 6 -0.5408 -4.8019 8.4252
17 7 -0.0464 -5.3705 9.5032
18 14 -2.3896 -4.7398 8.1664
19 1 -2.8269 -5.9506 7.4262
20 1 -3.0727 -4.6918 9.4842
21 1 -2.7394 -3.5276 7.3832
22 1 -0.3633 -1.0277 -0.0005
23 1 -0.3633 0.5133 0.8903
24 1 -0.3633 0.5143 -0.8896
25 1 2.3298 -0.0538 -2.0255
26 1 1.3134 -1.4644 -1.5979
27 1 3.5295 -2.3705 -1.3454
28 1 4.1718 -0.8332 -0.6785
29 1 2.2765 -2.8441 0.6557
30 1 3.7655 -2.1106 1.3269
31 1 0.2482 -0.4304 2.3513
32 1 0.3163 -1.9908 1.4977
33 1 2.0554 -2.6474 3.0635
34 1 -0.3381 -1.5848 4.4169
35 1 -0.2706 -3.1454 3.5636
36 1 1.5289 -3.9037 5.0911
37 1 1.4619 -2.3433 5.9450
38 1 -0.9063 -2.7706 6.5414
39 1 -0.8400 -4.3311 5.6878
40 1 -0.6418 -5.7580 10.1636
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000230676599.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:23:55
Heat of formation + Delta-G solvation = -38.184674 kcal
Electronic energy + Delta-G solvation = -15458.075864 eV
Core-core repulsion = 13077.995418 eV
Total energy + Delta-G solvation = -2380.080445 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 225.179 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-39.30027 -36.05413 -33.47311 -31.79426 -31.41109 -29.33537 -26.44192 -25.18060
-23.63646 -22.00974 -20.80395 -20.10871 -18.59250 -16.68738 -16.53516 -15.49938
-15.07831 -14.58450 -14.07817 -14.03810 -13.79306 -13.12318 -12.88979 -12.70597
-12.40667 -12.31123 -11.72131 -11.62331 -11.21710 -10.95720 -10.92174 -10.87383
-10.74437 -10.68861 -10.57623 -10.39043 -9.90384 -9.69015 -9.50983 -9.13394
-8.50370 -8.15104 -6.00776 -3.98280 3.32716 3.39945 3.44265 4.26403
4.40189 4.48327 4.49647 4.68526 5.10196 5.17928 5.20896 5.31125
5.33178 5.36708 5.44021 5.47852 5.62382 5.64131 5.71750 5.77992
5.80443 5.81818 5.90555 5.97074 6.05220 6.18521 6.19944 6.22120
6.35970 6.59720 6.63557 6.95931 7.28748 7.40542 7.48489 7.65150
7.84227 8.58907 9.04947 9.61981 11.12877
Molecular weight = 225.18amu
Principal moments of inertia in cm(-1)
A = 0.053492 B = 0.004170 C = 0.003974
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 523.313053 B = 6712.753517 C = 7043.866370
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C -0.091 4.091
3 H 0.070 0.930
4 C -0.121 4.121
5 C -0.125 4.125
6 C -0.122 4.122
7 C -0.087 4.087
8 H 0.080 0.920
9 C 0.063 3.937
10 N -0.693 5.693
11 C 0.057 3.943
12 C -0.100 4.100
13 C -0.013 4.013
14 C -0.518 4.518
15 H 0.072 0.928
16 C 0.064 3.936
17 N -0.905 5.905
18 Si 0.881 3.119
19 H -0.278 1.278
20 H -0.288 1.288
21 H -0.266 1.266
22 H 0.058 0.942
23 H 0.059 0.941
24 H 0.049 0.951
25 H 0.061 0.939
26 H 0.064 0.936
27 H 0.063 0.937
28 H 0.065 0.935
29 H 0.062 0.938
30 H 0.068 0.932
31 H 0.072 0.928
32 H 0.028 0.972
33 H 0.337 0.663
34 H 0.065 0.935
35 H 0.022 0.978
36 H 0.050 0.950
37 H 0.062 0.938
38 H 0.015 0.985
39 H 0.008 0.992
40 H 0.262 0.738
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.747 9.736 -21.669 23.914
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.110 4.110
3 H 0.089 0.911
4 C -0.158 4.158
5 C -0.163 4.163
6 C -0.160 4.160
7 C -0.106 4.106
8 H 0.098 0.902
9 C -0.066 4.066
10 N -0.324 5.324
11 C -0.072 4.072
12 C -0.138 4.138
13 C -0.051 4.051
14 C -0.556 4.556
15 H 0.090 0.910
16 C -0.136 4.136
17 N -0.544 5.544
18 Si 0.708 3.292
19 H -0.204 1.204
20 H -0.214 1.214
21 H -0.190 1.190
22 H 0.077 0.923
23 H 0.078 0.922
24 H 0.068 0.932
25 H 0.080 0.920
26 H 0.083 0.917
27 H 0.082 0.918
28 H 0.084 0.916
29 H 0.081 0.919
30 H 0.087 0.913
31 H 0.090 0.910
32 H 0.046 0.954
33 H 0.155 0.845
34 H 0.084 0.916
35 H 0.040 0.960
36 H 0.069 0.931
37 H 0.080 0.920
38 H 0.034 0.966
39 H 0.027 0.973
40 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges 2.736 10.241 -21.147 23.655
hybrid contribution -1.305 -0.863 -0.485 1.637
sum 1.432 9.379 -21.632 23.621
Atomic orbital electron populations
1.21981 0.95246 1.01986 1.01453 1.21788 0.95687 0.99187 0.94377
0.91145 1.22453 0.97402 0.98872 0.97087 1.22478 0.97632 0.99714
0.96441 1.22446 0.99726 0.97810 0.95987 1.21866 0.96592 0.96876
0.95271 0.90174 1.22209 0.96002 0.98296 0.90092 1.60540 1.17909
1.35570 1.18353 1.22131 0.92569 0.97795 0.94683 1.21443 0.99360
0.98939 0.94015 1.19546 0.94450 0.95774 0.95336 1.21166 0.95353
1.36112 1.02994 0.91029 1.25046 0.98789 0.94814 0.94986 1.69923
1.35220 1.38892 1.10415 0.86760 0.86016 0.78955 0.77436 1.20387
1.21403 1.19040 0.92335 0.92247 0.93151 0.92035 0.91711 0.91830
0.91593 0.91913 0.91336 0.91012 0.95437 0.84520 0.91621 0.96004
0.93119 0.91955 0.96629 0.97331 0.92799
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.30 7.88 37.16 0.29 -1.00 16
2 C -0.09 -0.81 3.51 -89.38 -0.31 -1.12 16
3 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16
4 C -0.12 -0.97 6.35 -25.07 -0.16 -1.13 16
5 C -0.13 -1.03 6.91 -24.74 -0.17 -1.20 16
6 C -0.12 -1.17 5.50 -25.07 -0.14 -1.31 16
7 C -0.09 -0.90 3.17 -89.39 -0.28 -1.18 16
8 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16
9 C 0.06 0.76 3.84 -3.82 -0.01 0.75 16
10 N -0.69 -10.09 6.50 -113.79 -0.74 -10.83 16
11 C 0.06 0.97 5.69 -3.83 -0.02 0.94 16
12 C -0.10 -2.04 5.41 -26.73 -0.14 -2.19 16
13 C -0.01 -0.32 4.04 -27.89 -0.11 -0.44 16
14 C -0.52 -15.20 9.66 -34.44 -0.33 -15.53 16
15 H 0.07 2.25 7.99 -52.48 -0.42 1.83 16
16 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16
17 N -0.91 -28.48 13.96 55.43 0.77 -27.71 16
18 Si 0.88 22.17 27.47 -169.99 -4.67 17.50 16
19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16
20 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16
21 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16
22 H 0.06 0.53 6.76 -51.93 -0.35 0.18 16
23 H 0.06 0.53 6.74 -51.93 -0.35 0.18 16
24 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16
25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16
26 H 0.06 0.53 7.85 -51.93 -0.41 0.12 16
27 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16
28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16
29 H 0.06 0.63 7.78 -51.93 -0.40 0.23 16
30 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16
31 H 0.07 0.88 6.56 -51.93 -0.34 0.54 16
32 H 0.03 0.33 6.82 -51.93 -0.35 -0.02 16
33 H 0.34 4.67 7.91 -39.29 -0.31 4.36 16
34 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16
35 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16
36 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16
37 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16
38 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16
39 H 0.01 0.20 7.57 -51.92 -0.39 -0.19 16
40 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16
LS Contribution 307.17 15.07 4.63 4.63
Total: -1.00 -30.46 307.17 -9.02 -39.48
By element:
Atomic # 1 Polarization: 6.05 SS G_CDS: -7.52 Total: -1.48 kcal
Atomic # 6 Polarization: -20.10 SS G_CDS: -1.50 Total: -21.60 kcal
Atomic # 7 Polarization: -38.57 SS G_CDS: 0.03 Total: -38.54 kcal
Atomic # 14 Polarization: 22.17 SS G_CDS: -4.67 Total: 17.50 kcal
Total LS contribution 4.63 Total: 4.63 kcal
Total: -30.46 -9.02 -39.48 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000230676599.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 1.300 kcal
(2) G-P(sol) polarization free energy of solvation -30.460 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.160 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.024 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.485 kcal
(6) G-S(sol) free energy of system = (1) + (5) -38.185 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds