Wall clock time and date at job start Mon Mar 30 2020 03:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 110.05681 * 2 1 4 4 C 1.54266 * 110.03378 * 238.57834 * 2 1 3 5 5 C 1.54891 * 104.31343 * 217.17258 * 4 2 1 6 6 C 1.54889 * 102.74891 * 37.87666 * 5 4 2 7 7 C 1.54097 * 110.15985 * 121.46414 * 2 1 3 8 8 H 1.09001 * 110.11088 * 238.46601 * 7 2 1 9 9 C 1.52995 * 109.92546 * 359.88152 * 7 2 1 10 10 N 1.46904 * 109.47117 * 183.58920 * 9 7 2 11 11 C 1.46894 * 111.00499 * 179.97438 * 10 9 7 12 12 C 1.52994 * 109.47325 * 179.97438 * 11 10 9 13 13 C 1.52999 * 109.47305 * 179.97438 * 12 11 10 14 14 C 1.50696 * 109.47492 * 179.97438 * 13 12 11 15 15 H 1.08005 * 119.99972 * 0.02562 * 14 13 12 16 16 C 1.37879 * 120.00274 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99812 * 180.02562 * 16 14 13 18 18 Si 1.86790 * 119.99857 * 0.02562 * 16 14 13 19 19 H 1.48495 * 109.47454 * 90.00109 * 18 16 14 20 20 H 1.48504 * 109.47300 * 209.99826 * 18 16 14 21 21 H 1.48502 * 109.47344 * 329.99813 * 18 16 14 22 22 H 1.09001 * 109.47114 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.46998 * 299.96736 * 1 2 3 24 24 H 1.08992 * 109.46948 * 59.96913 * 1 2 3 25 25 H 1.09002 * 110.48609 * 98.42671 * 4 2 1 26 26 H 1.08998 * 110.48769 * 335.91764 * 4 2 1 27 27 H 1.08998 * 110.75544 * 156.19347 * 5 4 2 28 28 H 1.09003 * 110.75304 * 279.56090 * 5 4 2 29 29 H 1.08996 * 110.48711 * 80.73713 * 6 5 4 30 30 H 1.09003 * 110.48476 * 203.24683 * 6 5 4 31 31 H 1.09003 * 109.47414 * 303.58068 * 9 7 2 32 32 H 1.08999 * 109.47629 * 63.58567 * 9 7 2 33 33 H 1.00909 * 110.99529 * 303.95469 * 10 9 7 34 34 H 1.09004 * 109.46998 * 299.99860 * 11 10 9 35 35 H 1.08995 * 109.47110 * 59.99255 * 11 10 9 36 36 H 1.08994 * 109.47187 * 299.99891 * 12 11 10 37 37 H 1.09007 * 109.47380 * 60.00152 * 12 11 10 38 38 H 1.08994 * 109.47312 * 300.00307 * 13 12 11 39 39 H 1.09009 * 109.46794 * 60.00346 * 13 12 11 40 40 H 0.97003 * 120.00065 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0585 -0.7556 -1.2368 5 6 3.3132 -1.5034 -0.7214 6 6 2.8884 -1.9433 0.7016 7 6 2.0611 -0.7551 1.2339 8 1 2.6928 -0.0983 1.8320 9 6 0.8905 -1.2667 2.0757 10 7 1.4062 -1.9094 3.2920 11 6 0.3080 -2.4135 4.1272 12 6 0.8831 -3.0750 5.3812 13 6 -0.2608 -3.5995 6.2514 14 6 0.3056 -4.2516 7.4862 15 1 1.3747 -4.2879 7.6357 16 6 -0.5408 -4.8019 8.4252 17 7 -0.0464 -5.3705 9.5032 18 14 -2.3896 -4.7398 8.1664 19 1 -2.8269 -5.9506 7.4262 20 1 -3.0727 -4.6918 9.4842 21 1 -2.7394 -3.5276 7.3832 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5133 0.8903 24 1 -0.3633 0.5143 -0.8896 25 1 2.3298 -0.0538 -2.0255 26 1 1.3134 -1.4644 -1.5979 27 1 3.5295 -2.3705 -1.3454 28 1 4.1718 -0.8332 -0.6785 29 1 2.2765 -2.8441 0.6557 30 1 3.7655 -2.1106 1.3269 31 1 0.2482 -0.4304 2.3513 32 1 0.3163 -1.9908 1.4977 33 1 2.0554 -2.6474 3.0635 34 1 -0.3381 -1.5848 4.4169 35 1 -0.2706 -3.1454 3.5636 36 1 1.5289 -3.9037 5.0911 37 1 1.4619 -2.3433 5.9450 38 1 -0.9063 -2.7706 6.5414 39 1 -0.8400 -4.3311 5.6878 40 1 -0.6418 -5.7580 10.1636 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230676599.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:55 Heat of formation + Delta-G solvation = -38.184674 kcal Electronic energy + Delta-G solvation = -15458.075864 eV Core-core repulsion = 13077.995418 eV Total energy + Delta-G solvation = -2380.080445 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.30027 -36.05413 -33.47311 -31.79426 -31.41109 -29.33537 -26.44192 -25.18060 -23.63646 -22.00974 -20.80395 -20.10871 -18.59250 -16.68738 -16.53516 -15.49938 -15.07831 -14.58450 -14.07817 -14.03810 -13.79306 -13.12318 -12.88979 -12.70597 -12.40667 -12.31123 -11.72131 -11.62331 -11.21710 -10.95720 -10.92174 -10.87383 -10.74437 -10.68861 -10.57623 -10.39043 -9.90384 -9.69015 -9.50983 -9.13394 -8.50370 -8.15104 -6.00776 -3.98280 3.32716 3.39945 3.44265 4.26403 4.40189 4.48327 4.49647 4.68526 5.10196 5.17928 5.20896 5.31125 5.33178 5.36708 5.44021 5.47852 5.62382 5.64131 5.71750 5.77992 5.80443 5.81818 5.90555 5.97074 6.05220 6.18521 6.19944 6.22120 6.35970 6.59720 6.63557 6.95931 7.28748 7.40542 7.48489 7.65150 7.84227 8.58907 9.04947 9.61981 11.12877 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.053492 B = 0.004170 C = 0.003974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.313053 B = 6712.753517 C = 7043.866370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.091 4.091 3 H 0.070 0.930 4 C -0.121 4.121 5 C -0.125 4.125 6 C -0.122 4.122 7 C -0.087 4.087 8 H 0.080 0.920 9 C 0.063 3.937 10 N -0.693 5.693 11 C 0.057 3.943 12 C -0.100 4.100 13 C -0.013 4.013 14 C -0.518 4.518 15 H 0.072 0.928 16 C 0.064 3.936 17 N -0.905 5.905 18 Si 0.881 3.119 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.266 1.266 22 H 0.058 0.942 23 H 0.059 0.941 24 H 0.049 0.951 25 H 0.061 0.939 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.028 0.972 33 H 0.337 0.663 34 H 0.065 0.935 35 H 0.022 0.978 36 H 0.050 0.950 37 H 0.062 0.938 38 H 0.015 0.985 39 H 0.008 0.992 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.747 9.736 -21.669 23.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.110 4.110 3 H 0.089 0.911 4 C -0.158 4.158 5 C -0.163 4.163 6 C -0.160 4.160 7 C -0.106 4.106 8 H 0.098 0.902 9 C -0.066 4.066 10 N -0.324 5.324 11 C -0.072 4.072 12 C -0.138 4.138 13 C -0.051 4.051 14 C -0.556 4.556 15 H 0.090 0.910 16 C -0.136 4.136 17 N -0.544 5.544 18 Si 0.708 3.292 19 H -0.204 1.204 20 H -0.214 1.214 21 H -0.190 1.190 22 H 0.077 0.923 23 H 0.078 0.922 24 H 0.068 0.932 25 H 0.080 0.920 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.046 0.954 33 H 0.155 0.845 34 H 0.084 0.916 35 H 0.040 0.960 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.034 0.966 39 H 0.027 0.973 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.736 10.241 -21.147 23.655 hybrid contribution -1.305 -0.863 -0.485 1.637 sum 1.432 9.379 -21.632 23.621 Atomic orbital electron populations 1.21981 0.95246 1.01986 1.01453 1.21788 0.95687 0.99187 0.94377 0.91145 1.22453 0.97402 0.98872 0.97087 1.22478 0.97632 0.99714 0.96441 1.22446 0.99726 0.97810 0.95987 1.21866 0.96592 0.96876 0.95271 0.90174 1.22209 0.96002 0.98296 0.90092 1.60540 1.17909 1.35570 1.18353 1.22131 0.92569 0.97795 0.94683 1.21443 0.99360 0.98939 0.94015 1.19546 0.94450 0.95774 0.95336 1.21166 0.95353 1.36112 1.02994 0.91029 1.25046 0.98789 0.94814 0.94986 1.69923 1.35220 1.38892 1.10415 0.86760 0.86016 0.78955 0.77436 1.20387 1.21403 1.19040 0.92335 0.92247 0.93151 0.92035 0.91711 0.91830 0.91593 0.91913 0.91336 0.91012 0.95437 0.84520 0.91621 0.96004 0.93119 0.91955 0.96629 0.97331 0.92799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 7.88 37.16 0.29 -1.00 16 2 C -0.09 -0.81 3.51 -89.38 -0.31 -1.12 16 3 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 4 C -0.12 -0.97 6.35 -25.07 -0.16 -1.13 16 5 C -0.13 -1.03 6.91 -24.74 -0.17 -1.20 16 6 C -0.12 -1.17 5.50 -25.07 -0.14 -1.31 16 7 C -0.09 -0.90 3.17 -89.39 -0.28 -1.18 16 8 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 9 C 0.06 0.76 3.84 -3.82 -0.01 0.75 16 10 N -0.69 -10.09 6.50 -113.79 -0.74 -10.83 16 11 C 0.06 0.97 5.69 -3.83 -0.02 0.94 16 12 C -0.10 -2.04 5.41 -26.73 -0.14 -2.19 16 13 C -0.01 -0.32 4.04 -27.89 -0.11 -0.44 16 14 C -0.52 -15.20 9.66 -34.44 -0.33 -15.53 16 15 H 0.07 2.25 7.99 -52.48 -0.42 1.83 16 16 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 17 N -0.91 -28.48 13.96 55.43 0.77 -27.71 16 18 Si 0.88 22.17 27.47 -169.99 -4.67 17.50 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 21 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 22 H 0.06 0.53 6.76 -51.93 -0.35 0.18 16 23 H 0.06 0.53 6.74 -51.93 -0.35 0.18 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.53 7.85 -51.93 -0.41 0.12 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.63 7.78 -51.93 -0.40 0.23 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.88 6.56 -51.93 -0.34 0.54 16 32 H 0.03 0.33 6.82 -51.93 -0.35 -0.02 16 33 H 0.34 4.67 7.91 -39.29 -0.31 4.36 16 34 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 39 H 0.01 0.20 7.57 -51.92 -0.39 -0.19 16 40 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 307.17 15.07 4.63 4.63 Total: -1.00 -30.46 307.17 -9.02 -39.48 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -7.52 Total: -1.48 kcal Atomic # 6 Polarization: -20.10 SS G_CDS: -1.50 Total: -21.60 kcal Atomic # 7 Polarization: -38.57 SS G_CDS: 0.03 Total: -38.54 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.67 Total: 17.50 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.46 -9.02 -39.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230676599.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.300 kcal (2) G-P(sol) polarization free energy of solvation -30.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds