Wall clock time and date at job start Mon Mar 30 2020 03:23:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 110.05681 * 2 1 4 4 C 1.54266 * 110.03378 * 238.57834 * 2 1 3 5 5 C 1.54891 * 104.31343 * 217.17258 * 4 2 1 6 6 C 1.54889 * 102.74891 * 37.87666 * 5 4 2 7 7 C 1.54097 * 110.15985 * 121.46414 * 2 1 3 8 8 H 1.09001 * 110.11088 * 238.46601 * 7 2 1 9 9 C 1.52995 * 109.92546 * 359.88152 * 7 2 1 10 10 N 1.46904 * 109.47117 * 183.58920 * 9 7 2 11 11 C 1.46894 * 111.00499 * 179.97438 * 10 9 7 12 12 C 1.52994 * 109.47325 * 179.97438 * 11 10 9 13 13 C 1.52999 * 109.47305 * 179.97438 * 12 11 10 14 14 C 1.50696 * 109.47492 * 179.97438 * 13 12 11 15 15 H 1.08005 * 119.99972 * 0.02562 * 14 13 12 16 16 C 1.37879 * 120.00274 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99812 * 180.02562 * 16 14 13 18 18 Si 1.86790 * 119.99857 * 0.02562 * 16 14 13 19 19 H 1.48495 * 109.47454 * 90.00109 * 18 16 14 20 20 H 1.48504 * 109.47300 * 209.99826 * 18 16 14 21 21 H 1.48502 * 109.47344 * 329.99813 * 18 16 14 22 22 H 1.09001 * 109.47114 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.46998 * 299.96736 * 1 2 3 24 24 H 1.08992 * 109.46948 * 59.96913 * 1 2 3 25 25 H 1.09002 * 110.48609 * 98.42671 * 4 2 1 26 26 H 1.08998 * 110.48769 * 335.91764 * 4 2 1 27 27 H 1.08998 * 110.75544 * 156.19347 * 5 4 2 28 28 H 1.09003 * 110.75304 * 279.56090 * 5 4 2 29 29 H 1.08996 * 110.48711 * 80.73713 * 6 5 4 30 30 H 1.09003 * 110.48476 * 203.24683 * 6 5 4 31 31 H 1.09003 * 109.47414 * 303.58068 * 9 7 2 32 32 H 1.08999 * 109.47629 * 63.58567 * 9 7 2 33 33 H 1.00909 * 110.99529 * 303.95469 * 10 9 7 34 34 H 1.09004 * 109.46998 * 299.99860 * 11 10 9 35 35 H 1.08995 * 109.47110 * 59.99255 * 11 10 9 36 36 H 1.08994 * 109.47187 * 299.99891 * 12 11 10 37 37 H 1.09007 * 109.47380 * 60.00152 * 12 11 10 38 38 H 1.08994 * 109.47312 * 300.00307 * 13 12 11 39 39 H 1.09009 * 109.46794 * 60.00346 * 13 12 11 40 40 H 0.97003 * 120.00065 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0585 -0.7556 -1.2368 5 6 3.3132 -1.5034 -0.7214 6 6 2.8884 -1.9433 0.7016 7 6 2.0611 -0.7551 1.2339 8 1 2.6928 -0.0983 1.8320 9 6 0.8905 -1.2667 2.0757 10 7 1.4062 -1.9094 3.2920 11 6 0.3080 -2.4135 4.1272 12 6 0.8831 -3.0750 5.3812 13 6 -0.2608 -3.5995 6.2514 14 6 0.3056 -4.2516 7.4862 15 1 1.3747 -4.2879 7.6357 16 6 -0.5408 -4.8019 8.4252 17 7 -0.0464 -5.3705 9.5032 18 14 -2.3896 -4.7398 8.1664 19 1 -2.8269 -5.9506 7.4262 20 1 -3.0727 -4.6918 9.4842 21 1 -2.7394 -3.5276 7.3832 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5133 0.8903 24 1 -0.3633 0.5143 -0.8896 25 1 2.3298 -0.0538 -2.0255 26 1 1.3134 -1.4644 -1.5979 27 1 3.5295 -2.3705 -1.3454 28 1 4.1718 -0.8332 -0.6785 29 1 2.2765 -2.8441 0.6557 30 1 3.7655 -2.1106 1.3269 31 1 0.2482 -0.4304 2.3513 32 1 0.3163 -1.9908 1.4977 33 1 2.0554 -2.6474 3.0635 34 1 -0.3381 -1.5848 4.4169 35 1 -0.2706 -3.1454 3.5636 36 1 1.5289 -3.9037 5.0911 37 1 1.4619 -2.3433 5.9450 38 1 -0.9063 -2.7706 6.5414 39 1 -0.8400 -4.3311 5.6878 40 1 -0.6418 -5.7580 10.1636 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230676599.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:55 Heat of formation + Delta-G solvation = -56.634209 kcal Electronic energy + Delta-G solvation = -15458.875896 eV Core-core repulsion = 13077.995418 eV Total energy + Delta-G solvation = -2380.880477 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.09444 -37.38503 -35.33049 -33.48492 -32.26618 -30.54119 -28.02887 -25.92988 -24.83617 -23.51457 -21.89252 -21.51323 -19.43384 -18.87468 -17.43318 -16.70252 -16.30529 -15.89464 -15.49131 -15.33258 -14.75654 -14.50339 -14.21284 -13.97476 -13.74224 -13.21948 -13.15183 -12.98258 -12.65499 -12.44616 -11.89493 -11.81672 -11.73498 -11.63183 -11.51649 -11.50433 -11.42709 -11.35100 -11.17820 -11.07107 -10.76770 -9.31177 -8.29834 -6.34330 1.35439 1.37919 1.50307 2.36349 3.05244 3.22944 3.67846 3.74510 3.87706 4.18363 4.28725 4.39445 4.45309 4.48645 4.57951 4.61821 4.66678 4.70162 4.75351 4.82896 4.94599 4.96148 4.97098 5.03737 5.09244 5.12253 5.15210 5.27922 5.35876 5.42828 5.49948 5.53042 5.59672 5.60178 5.65957 6.13790 6.29564 6.50246 6.73914 7.30273 8.87290 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.053492 B = 0.004170 C = 0.003974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.313053 B = 6712.753517 C = 7043.866370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.090 4.090 3 H 0.075 0.925 4 C -0.118 4.118 5 C -0.123 4.123 6 C -0.123 4.123 7 C -0.085 4.085 8 H 0.070 0.930 9 C 0.066 3.934 10 N -0.699 5.699 11 C 0.070 3.930 12 C -0.091 4.091 13 C -0.010 4.010 14 C -0.535 4.535 15 H 0.029 0.971 16 C 0.001 3.999 17 N -0.953 5.953 18 Si 0.955 3.045 19 H -0.265 1.265 20 H -0.283 1.283 21 H -0.246 1.246 22 H 0.053 0.947 23 H 0.054 0.946 24 H 0.061 0.939 25 H 0.073 0.927 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.032 0.968 33 H 0.341 0.659 34 H 0.068 0.932 35 H 0.029 0.971 36 H 0.046 0.954 37 H 0.048 0.952 38 H 0.020 0.980 39 H 0.019 0.981 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.298 10.549 -23.808 26.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.109 4.109 3 H 0.093 0.907 4 C -0.155 4.155 5 C -0.160 4.160 6 C -0.161 4.161 7 C -0.103 4.103 8 H 0.088 0.912 9 C -0.062 4.062 10 N -0.330 5.330 11 C -0.059 4.059 12 C -0.129 4.129 13 C -0.048 4.048 14 C -0.573 4.573 15 H 0.047 0.953 16 C -0.196 4.196 17 N -0.594 5.594 18 Si 0.778 3.222 19 H -0.190 1.190 20 H -0.209 1.209 21 H -0.169 1.169 22 H 0.072 0.928 23 H 0.073 0.927 24 H 0.080 0.920 25 H 0.092 0.908 26 H 0.083 0.917 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.050 0.950 33 H 0.159 0.841 34 H 0.086 0.914 35 H 0.048 0.952 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.039 0.961 39 H 0.037 0.963 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.304 11.066 -23.311 25.838 hybrid contribution -0.734 -1.122 0.214 1.357 sum 0.570 9.945 -23.098 25.154 Atomic orbital electron populations 1.21961 0.95019 1.01752 1.01809 1.21787 0.95851 0.99315 0.93915 0.90659 1.22446 0.97163 0.98984 0.96952 1.22478 0.97925 1.00123 0.95495 1.22440 0.99373 0.97345 0.96934 1.21830 0.95876 0.97080 0.95563 0.91179 1.22248 0.96721 0.98045 0.89199 1.60490 1.17343 1.35620 1.19591 1.21871 0.92953 0.97736 0.93383 1.21273 0.97937 0.98623 0.95102 1.19491 0.95666 0.95707 0.93936 1.21526 0.93730 1.36751 1.05304 0.95288 1.26087 1.04869 0.94181 0.94422 1.70081 1.37512 1.40126 1.11671 0.85584 0.78569 0.80110 0.77928 1.19018 1.20856 1.16948 0.92818 0.92709 0.92025 0.90836 0.91688 0.91129 0.91168 0.92386 0.91799 0.91105 0.95033 0.84110 0.91387 0.95239 0.93554 0.93349 0.96148 0.96304 0.92462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 7.88 71.98 0.57 -1.69 16 2 C -0.09 -1.40 3.51 -9.99 -0.04 -1.44 16 3 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 4 C -0.12 -1.62 6.35 31.67 0.20 -1.42 16 5 C -0.12 -1.78 6.91 31.89 0.22 -1.56 16 6 C -0.12 -2.20 5.50 31.67 0.17 -2.03 16 7 C -0.08 -1.62 3.17 -10.00 -0.03 -1.65 16 8 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 9 C 0.07 1.50 3.84 86.30 0.33 1.83 16 10 N -0.70 -19.47 6.50 -513.91 -3.34 -22.81 16 11 C 0.07 2.25 5.69 86.30 0.49 2.74 16 12 C -0.09 -3.72 5.41 30.59 0.17 -3.55 16 13 C -0.01 -0.48 4.04 29.85 0.12 -0.36 16 14 C -0.54 -32.00 9.66 25.60 0.25 -31.75 16 15 H 0.03 1.91 7.99 -2.91 -0.02 1.89 16 16 C 0.00 0.05 5.47 84.65 0.46 0.51 16 17 N -0.95 -61.22 13.96 21.45 0.30 -60.92 16 18 Si 0.96 45.06 27.47 68.60 1.88 46.94 16 19 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 20 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 21 H -0.25 -10.75 6.54 99.48 0.65 -10.10 16 22 H 0.05 0.87 6.76 -2.39 -0.02 0.85 16 23 H 0.05 0.88 6.74 -2.39 -0.02 0.86 16 24 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.06 0.90 7.85 -2.39 -0.02 0.88 16 27 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.07 0.96 8.14 -2.39 -0.02 0.95 16 29 H 0.06 1.09 7.78 -2.39 -0.02 1.07 16 30 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.07 1.62 6.56 -2.39 -0.02 1.60 16 32 H 0.03 0.70 6.82 -2.39 -0.02 0.68 16 33 H 0.34 9.09 7.91 -89.69 -0.71 8.38 16 34 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 35 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 38 H 0.02 0.96 7.20 -2.39 -0.02 0.94 16 39 H 0.02 0.87 7.57 -2.38 -0.02 0.85 16 40 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 Total: -1.00 -65.48 307.17 1.97 -63.51 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: 0.21 Total: 13.66 kcal Atomic # 6 Polarization: -43.30 SS G_CDS: 2.91 Total: -40.38 kcal Atomic # 7 Polarization: -80.69 SS G_CDS: -3.04 Total: -83.73 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.88 Total: 46.94 kcal Total: -65.48 1.97 -63.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230676599.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.879 kcal (2) G-P(sol) polarization free energy of solvation -65.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds