Wall clock time and date at job start Mon Mar 30 2020 02:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53006 * 109.46979 * 2 1 4 4 H 1.09003 * 109.47262 * 305.61502 * 3 2 1 5 5 C 1.50699 * 109.47001 * 185.61757 * 3 2 1 6 6 H 1.07992 * 120.00002 * 240.00258 * 5 3 2 7 7 C 1.37877 * 119.99868 * 59.99580 * 5 3 2 8 8 N 1.31511 * 120.00479 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99709 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47384 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46930 * 120.00152 * 9 7 5 12 12 H 1.48501 * 109.47619 * 240.00091 * 9 7 5 13 13 N 1.46900 * 109.47271 * 65.61376 * 3 2 1 14 14 C 1.46851 * 110.99676 * 41.27644 * 13 3 2 15 15 C 1.53032 * 109.52166 * 174.15945 * 14 13 3 16 16 H 1.09007 * 109.50553 * 299.23742 * 15 14 13 17 17 C 1.52997 * 109.50647 * 179.12065 * 15 14 13 18 18 C 1.53124 * 109.27968 * 59.17762 * 15 14 13 19 19 C 1.53114 * 109.16089 * 302.34705 * 18 15 14 20 20 C 1.46845 * 110.99991 * 277.06918 * 13 3 2 21 21 H 1.08994 * 109.46566 * 65.82096 * 20 13 3 22 22 C 1.53004 * 109.45988 * 305.85165 * 20 13 3 23 23 H 1.09000 * 109.46777 * 278.57533 * 1 2 3 24 24 H 1.09000 * 109.47016 * 38.57321 * 1 2 3 25 25 H 1.08996 * 109.47095 * 158.57266 * 1 2 3 26 26 H 1.09000 * 109.46867 * 240.00135 * 2 1 3 27 27 H 1.08990 * 109.47115 * 119.99637 * 2 1 3 28 28 H 0.96995 * 120.00356 * 179.97438 * 8 7 5 29 29 H 1.08997 * 109.46100 * 294.17720 * 14 13 3 30 30 H 1.09004 * 109.46231 * 54.15487 * 14 13 3 31 31 H 1.09004 * 109.47120 * 59.99677 * 17 15 14 32 32 H 1.08998 * 109.47857 * 180.02562 * 17 15 14 33 33 H 1.09002 * 109.46819 * 300.00122 * 17 15 14 34 34 H 1.09000 * 109.52060 * 62.25285 * 18 15 14 35 35 H 1.08998 * 109.51883 * 182.43856 * 18 15 14 36 36 H 1.08998 * 109.50262 * 177.59239 * 19 18 15 37 37 H 1.09002 * 109.50578 * 297.67483 * 19 18 15 38 38 H 1.08992 * 109.47157 * 68.06534 * 22 20 13 39 39 H 1.08997 * 109.46947 * 188.06707 * 22 20 13 40 40 H 1.08998 * 109.47086 * 308.06478 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.5969 1.9846 -0.8354 5 6 3.5406 1.4448 -0.1391 6 1 4.1537 1.8866 0.6324 7 6 4.1307 0.8828 -1.2513 8 7 3.3841 0.3452 -2.1910 9 14 5.9907 0.8863 -1.4240 10 1 6.5966 1.5472 -0.2401 11 1 6.4820 -0.5121 -1.5151 12 1 6.3724 1.6261 -2.6537 13 7 1.6642 2.0949 1.2614 14 6 1.8487 1.1853 2.3995 15 6 1.5881 1.9403 3.7049 16 1 2.2953 2.7649 3.7958 17 6 1.7590 0.9869 4.8893 18 6 0.1594 2.4910 3.6940 19 6 -0.0208 3.3965 2.4725 20 6 0.2863 2.5993 1.2028 21 1 -0.4047 1.7601 1.1248 22 6 0.1270 3.5059 -0.0194 23 1 -0.3633 0.1532 1.0162 24 1 -0.3633 0.8034 -0.6408 25 1 -0.3633 -0.9566 -0.3754 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5137 0.8899 28 1 3.7992 -0.0498 -2.9736 29 1 1.1503 0.3527 2.3159 30 1 2.8699 0.8043 2.3981 31 1 2.7752 0.5925 4.8945 32 1 1.5729 1.5250 5.8187 33 1 1.0503 0.1638 4.7982 34 1 -0.5492 1.6644 3.6423 35 1 -0.0162 3.0662 4.6030 36 1 -1.0486 3.7577 2.4358 37 1 0.6605 4.2444 2.5443 38 1 0.2035 2.9082 -0.9276 39 1 -0.8476 3.9929 0.0140 40 1 0.9115 4.2626 -0.0153 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251379490.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:14 Heat of formation + Delta-G solvation = -10.557842 kcal Electronic energy + Delta-G solvation = -17216.324787 eV Core-core repulsion = 14837.442331 eV Total energy + Delta-G solvation = -2378.882456 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.17373 -35.10531 -33.04868 -31.78501 -30.10858 -28.39577 -26.93210 -24.36003 -23.46229 -22.57652 -20.18962 -19.54153 -18.57752 -16.22193 -15.33014 -14.66136 -14.18484 -14.09979 -13.90631 -13.46018 -12.99858 -12.42524 -12.37473 -12.21859 -11.71598 -11.51450 -11.24595 -11.16013 -11.05389 -10.95764 -10.73723 -10.66024 -10.31164 -10.19187 -10.14775 -10.05993 -9.67686 -9.50170 -9.19431 -8.78486 -8.23510 -6.89278 -5.94040 -3.96317 3.33270 3.41365 3.46521 4.46760 4.95333 5.21024 5.33449 5.35994 5.37615 5.56373 5.84909 5.90357 5.96095 6.01811 6.13009 6.15008 6.20947 6.23014 6.25982 6.29580 6.33349 6.45516 6.48317 6.54873 6.64229 6.74168 6.82365 6.85423 6.90408 7.02983 7.10134 7.35931 7.61095 7.80681 7.95652 8.33002 8.52533 8.72588 9.11557 9.68167 11.12296 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.027341 B = 0.009685 C = 0.008639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.843283 B = 2890.332420 C = 3240.432143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.154 4.154 3 C 0.210 3.790 4 H 0.048 0.952 5 C -0.490 4.490 6 H 0.061 0.939 7 C 0.055 3.945 8 N -0.896 5.896 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.286 1.286 13 N -0.524 5.524 14 C 0.070 3.930 15 C -0.094 4.094 16 H 0.072 0.928 17 C -0.143 4.143 18 C -0.111 4.111 19 C -0.111 4.111 20 C 0.065 3.935 21 H 0.047 0.953 22 C -0.143 4.143 23 H 0.038 0.962 24 H 0.046 0.954 25 H 0.031 0.969 26 H 0.097 0.903 27 H 0.038 0.962 28 H 0.258 0.742 29 H 0.027 0.973 30 H 0.074 0.926 31 H 0.053 0.947 32 H 0.048 0.952 33 H 0.049 0.951 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.042 0.958 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.311 2.253 8.575 10.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.193 4.193 3 C 0.104 3.896 4 H 0.066 0.934 5 C -0.529 4.529 6 H 0.079 0.921 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.721 3.279 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.212 1.212 13 N -0.248 5.248 14 C -0.059 4.059 15 C -0.113 4.113 16 H 0.091 0.909 17 C -0.201 4.201 18 C -0.148 4.148 19 C -0.148 4.148 20 C -0.044 4.044 21 H 0.064 0.936 22 C -0.201 4.201 23 H 0.056 0.944 24 H 0.065 0.935 25 H 0.050 0.950 26 H 0.115 0.885 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.045 0.955 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.061 0.939 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.975 2.579 8.457 10.672 hybrid contribution 0.459 -0.817 -0.321 0.991 sum -5.516 1.762 8.137 9.987 Atomic orbital electron populations 1.22123 0.99687 0.99698 0.99192 1.22269 0.91530 1.02600 1.02933 1.19493 0.95464 0.88588 0.86043 0.93444 1.21216 0.91257 1.35783 1.04641 0.92094 1.24923 0.97914 0.95714 0.95925 1.69882 1.34480 1.39723 1.09533 0.86526 0.86025 0.77427 0.77935 1.19804 1.21322 1.21217 1.62239 1.19542 1.38267 1.04777 1.21987 1.01069 0.93393 0.89425 1.21239 0.96643 0.98359 0.95014 0.90935 1.21778 1.01505 0.99253 0.97568 1.21591 0.96889 0.98781 0.97577 1.21630 0.99969 0.98617 0.94631 1.21845 0.91912 0.96644 0.93972 0.93585 1.21892 1.00082 0.99916 0.98177 0.94352 0.93454 0.94976 0.88511 0.94318 0.93224 0.95537 0.90763 0.92739 0.93326 0.93227 0.92928 0.92948 0.92909 0.91713 0.92008 0.93881 0.92081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 8.16 37.16 0.30 -2.70 16 2 C -0.15 -3.63 4.72 -26.72 -0.13 -3.75 16 3 C 0.21 5.15 1.71 -68.86 -0.12 5.03 16 4 H 0.05 1.26 5.21 -51.93 -0.27 0.99 16 5 C -0.49 -13.39 8.21 -34.44 -0.28 -13.67 16 6 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 7 C 0.06 1.52 5.29 -17.82 -0.09 1.43 16 8 N -0.90 -25.39 11.29 55.43 0.63 -24.76 16 9 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 10 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 N -0.52 -11.09 4.34 -220.13 -0.95 -12.04 16 14 C 0.07 1.35 3.37 -3.83 -0.01 1.34 16 15 C -0.09 -1.49 2.88 -90.54 -0.26 -1.75 16 16 H 0.07 1.22 8.14 -51.92 -0.42 0.80 16 17 C -0.14 -1.92 9.20 37.16 0.34 -1.58 16 18 C -0.11 -1.61 5.29 -26.61 -0.14 -1.75 16 19 C -0.11 -1.71 5.37 -26.65 -0.14 -1.86 16 20 C 0.06 1.18 1.79 -67.72 -0.12 1.06 16 21 H 0.05 0.86 4.30 -51.93 -0.22 0.64 16 22 C -0.14 -2.56 8.48 37.16 0.32 -2.25 16 23 H 0.04 0.71 5.26 -51.93 -0.27 0.44 16 24 H 0.05 0.95 6.50 -51.93 -0.34 0.61 16 25 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.10 2.58 5.94 -51.93 -0.31 2.27 16 27 H 0.04 0.90 6.10 -51.93 -0.32 0.59 16 28 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.03 0.52 5.33 -51.93 -0.28 0.24 16 30 H 0.07 1.58 7.61 -51.93 -0.39 1.19 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 38 H 0.06 1.21 5.64 -51.93 -0.29 0.92 16 39 H 0.04 0.64 8.13 -51.93 -0.42 0.22 16 40 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 288.50 15.07 4.35 4.35 Total: -1.00 -27.38 288.50 -8.23 -35.61 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -6.89 Total: 0.81 kcal Atomic # 6 Polarization: -20.11 SS G_CDS: -0.34 Total: -20.45 kcal Atomic # 7 Polarization: -36.47 SS G_CDS: -0.33 Total: -36.80 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -27.38 -8.23 -35.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251379490.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.048 kcal (2) G-P(sol) polarization free energy of solvation -27.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds