Wall clock time and date at job start Mon Mar 30 2020 02:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53006 * 109.46979 * 2 1 4 4 H 1.09003 * 109.47262 * 305.61502 * 3 2 1 5 5 C 1.50699 * 109.47001 * 185.61757 * 3 2 1 6 6 H 1.07992 * 120.00002 * 240.00258 * 5 3 2 7 7 C 1.37877 * 119.99868 * 59.99580 * 5 3 2 8 8 N 1.31511 * 120.00479 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99709 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47384 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46930 * 120.00152 * 9 7 5 12 12 H 1.48501 * 109.47619 * 240.00091 * 9 7 5 13 13 N 1.46900 * 109.47271 * 65.61376 * 3 2 1 14 14 C 1.46851 * 110.99676 * 41.27644 * 13 3 2 15 15 C 1.53032 * 109.52166 * 174.15945 * 14 13 3 16 16 H 1.09007 * 109.50553 * 299.23742 * 15 14 13 17 17 C 1.52997 * 109.50647 * 179.12065 * 15 14 13 18 18 C 1.53124 * 109.27968 * 59.17762 * 15 14 13 19 19 C 1.53114 * 109.16089 * 302.34705 * 18 15 14 20 20 C 1.46845 * 110.99991 * 277.06918 * 13 3 2 21 21 H 1.08994 * 109.46566 * 65.82096 * 20 13 3 22 22 C 1.53004 * 109.45988 * 305.85165 * 20 13 3 23 23 H 1.09000 * 109.46777 * 278.57533 * 1 2 3 24 24 H 1.09000 * 109.47016 * 38.57321 * 1 2 3 25 25 H 1.08996 * 109.47095 * 158.57266 * 1 2 3 26 26 H 1.09000 * 109.46867 * 240.00135 * 2 1 3 27 27 H 1.08990 * 109.47115 * 119.99637 * 2 1 3 28 28 H 0.96995 * 120.00356 * 179.97438 * 8 7 5 29 29 H 1.08997 * 109.46100 * 294.17720 * 14 13 3 30 30 H 1.09004 * 109.46231 * 54.15487 * 14 13 3 31 31 H 1.09004 * 109.47120 * 59.99677 * 17 15 14 32 32 H 1.08998 * 109.47857 * 180.02562 * 17 15 14 33 33 H 1.09002 * 109.46819 * 300.00122 * 17 15 14 34 34 H 1.09000 * 109.52060 * 62.25285 * 18 15 14 35 35 H 1.08998 * 109.51883 * 182.43856 * 18 15 14 36 36 H 1.08998 * 109.50262 * 177.59239 * 19 18 15 37 37 H 1.09002 * 109.50578 * 297.67483 * 19 18 15 38 38 H 1.08992 * 109.47157 * 68.06534 * 22 20 13 39 39 H 1.08997 * 109.46947 * 188.06707 * 22 20 13 40 40 H 1.08998 * 109.47086 * 308.06478 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.5969 1.9846 -0.8354 5 6 3.5406 1.4448 -0.1391 6 1 4.1537 1.8866 0.6324 7 6 4.1307 0.8828 -1.2513 8 7 3.3841 0.3452 -2.1910 9 14 5.9907 0.8863 -1.4240 10 1 6.5966 1.5472 -0.2401 11 1 6.4820 -0.5121 -1.5151 12 1 6.3724 1.6261 -2.6537 13 7 1.6642 2.0949 1.2614 14 6 1.8487 1.1853 2.3995 15 6 1.5881 1.9403 3.7049 16 1 2.2953 2.7649 3.7958 17 6 1.7590 0.9869 4.8893 18 6 0.1594 2.4910 3.6940 19 6 -0.0208 3.3965 2.4725 20 6 0.2863 2.5993 1.2028 21 1 -0.4047 1.7601 1.1248 22 6 0.1270 3.5059 -0.0194 23 1 -0.3633 0.1532 1.0162 24 1 -0.3633 0.8034 -0.6408 25 1 -0.3633 -0.9566 -0.3754 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5137 0.8899 28 1 3.7992 -0.0498 -2.9736 29 1 1.1503 0.3527 2.3159 30 1 2.8699 0.8043 2.3981 31 1 2.7752 0.5925 4.8945 32 1 1.5729 1.5250 5.8187 33 1 1.0503 0.1638 4.7982 34 1 -0.5492 1.6644 3.6423 35 1 -0.0162 3.0662 4.6030 36 1 -1.0486 3.7577 2.4358 37 1 0.6605 4.2444 2.5443 38 1 0.2035 2.9082 -0.9276 39 1 -0.8476 3.9929 0.0140 40 1 0.9115 4.2626 -0.0153 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251379490.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:13 Heat of formation + Delta-G solvation = -26.065707 kcal Electronic energy + Delta-G solvation = -17216.997259 eV Core-core repulsion = 14837.442331 eV Total energy + Delta-G solvation = -2379.554928 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.71443 -36.68447 -34.64782 -33.61158 -31.75906 -29.67195 -28.83998 -25.91343 -25.07503 -24.14644 -21.68940 -21.09262 -20.14977 -18.28059 -17.00956 -16.41275 -15.84176 -15.51145 -15.43032 -14.92032 -14.49663 -14.09626 -13.78815 -13.58373 -13.20117 -13.15474 -13.02704 -12.73865 -12.56263 -12.48245 -12.43623 -12.24747 -12.02913 -11.88877 -11.80579 -11.46077 -11.24011 -11.08394 -10.81018 -10.67742 -10.29590 -8.57750 -8.05510 -6.14725 1.39075 1.41483 1.52934 2.44520 3.21398 3.43650 3.96523 4.08308 4.09285 4.25252 4.39980 4.51089 4.55187 4.60487 4.66280 4.74984 4.80285 4.86495 4.90119 4.98108 5.00132 5.11147 5.14264 5.16015 5.18614 5.25886 5.35989 5.38596 5.42787 5.48725 5.53803 5.67713 5.69222 5.84030 5.92539 6.38214 6.69052 6.93495 7.01405 7.54008 8.98957 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.027341 B = 0.009685 C = 0.008639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.843283 B = 2890.332420 C = 3240.432143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.146 4.146 3 C 0.216 3.784 4 H 0.023 0.977 5 C -0.507 4.507 6 H 0.046 0.954 7 C 0.011 3.989 8 N -0.919 5.919 9 Si 0.951 3.049 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.536 5.536 14 C 0.073 3.927 15 C -0.090 4.090 16 H 0.061 0.939 17 C -0.138 4.138 18 C -0.106 4.106 19 C -0.106 4.106 20 C 0.061 3.939 21 H 0.047 0.953 22 C -0.138 4.138 23 H 0.056 0.944 24 H 0.044 0.956 25 H 0.044 0.956 26 H 0.063 0.937 27 H 0.033 0.967 28 H 0.259 0.741 29 H 0.024 0.976 30 H 0.043 0.957 31 H 0.047 0.953 32 H 0.072 0.928 33 H 0.054 0.946 34 H 0.059 0.941 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.057 0.943 38 H 0.036 0.964 39 H 0.076 0.924 40 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.451 2.728 10.279 12.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.186 4.186 3 C 0.109 3.891 4 H 0.041 0.959 5 C -0.546 4.546 6 H 0.064 0.936 7 C -0.187 4.187 8 N -0.560 5.560 9 Si 0.778 3.222 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.261 5.261 14 C -0.055 4.055 15 C -0.109 4.109 16 H 0.079 0.921 17 C -0.196 4.196 18 C -0.144 4.144 19 C -0.144 4.144 20 C -0.048 4.048 21 H 0.065 0.935 22 C -0.196 4.196 23 H 0.074 0.926 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.081 0.919 27 H 0.052 0.948 28 H 0.068 0.932 29 H 0.042 0.958 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.091 0.909 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.076 0.924 38 H 0.055 0.945 39 H 0.095 0.905 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.122 3.060 10.174 12.791 hybrid contribution 0.811 -0.947 -0.858 1.513 sum -6.311 2.114 9.317 11.450 Atomic orbital electron populations 1.21966 0.96757 1.00358 1.00321 1.22077 0.94122 1.01503 1.00889 1.19218 0.93791 0.88997 0.87101 0.95943 1.21478 0.93022 1.35710 1.04365 0.93596 1.25609 1.01890 0.95494 0.95721 1.70005 1.35936 1.40203 1.09830 0.85608 0.81298 0.77502 0.77809 1.19641 1.20793 1.20780 1.62165 1.21931 1.38214 1.03740 1.21954 0.99154 0.93640 0.90737 1.21201 0.97754 0.98134 0.93784 0.92074 1.21734 1.01398 0.99061 0.97373 1.21582 0.95495 0.99049 0.98226 1.21613 1.01389 0.98053 0.93327 1.21986 0.89981 0.96996 0.95790 0.93513 1.21841 1.01433 0.99238 0.97043 0.92562 0.93723 0.93682 0.91889 0.94843 0.93221 0.95768 0.93880 0.93347 0.90906 0.92669 0.92261 0.90193 0.90133 0.92398 0.94539 0.90528 0.93523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.40 8.16 71.98 0.59 -4.81 16 2 C -0.15 -7.05 4.72 30.60 0.14 -6.90 16 3 C 0.22 10.90 1.71 44.17 0.08 10.98 16 4 H 0.02 1.26 5.21 -2.39 -0.01 1.24 16 5 C -0.51 -28.64 8.21 25.60 0.21 -28.43 16 6 H 0.05 2.66 7.81 -2.91 -0.02 2.64 16 7 C 0.01 0.60 5.29 84.66 0.45 1.05 16 8 N -0.92 -53.48 11.29 21.45 0.24 -53.24 16 9 Si 0.95 45.00 29.54 68.60 2.03 47.02 16 10 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 12 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 13 N -0.54 -22.85 4.34 -850.37 -3.69 -26.53 16 14 C 0.07 2.83 3.37 86.32 0.29 3.12 16 15 C -0.09 -2.69 2.88 -10.74 -0.03 -2.72 16 16 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 17 C -0.14 -3.36 9.20 71.98 0.66 -2.70 16 18 C -0.11 -2.69 5.29 30.67 0.16 -2.53 16 19 C -0.11 -2.96 5.37 30.65 0.16 -2.80 16 20 C 0.06 2.13 1.79 44.94 0.08 2.21 16 21 H 0.05 1.65 4.30 -2.39 -0.01 1.64 16 22 C -0.14 -4.85 8.48 71.98 0.61 -4.24 16 23 H 0.06 2.00 5.26 -2.39 -0.01 1.99 16 24 H 0.04 1.77 6.50 -2.39 -0.02 1.75 16 25 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.06 3.47 5.94 -2.39 -0.01 3.46 16 27 H 0.03 1.60 6.10 -2.39 -0.01 1.58 16 28 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 29 H 0.02 0.94 5.33 -2.39 -0.01 0.92 16 30 H 0.04 1.89 7.61 -2.39 -0.02 1.87 16 31 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.05 1.28 8.14 -2.39 -0.02 1.27 16 34 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.04 1.44 5.64 -2.39 -0.01 1.43 16 39 H 0.08 2.13 8.13 -2.39 -0.02 2.11 16 40 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -60.18 288.50 2.97 -57.21 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: 0.99 Total: 13.32 kcal Atomic # 6 Polarization: -41.18 SS G_CDS: 3.40 Total: -37.78 kcal Atomic # 7 Polarization: -76.32 SS G_CDS: -3.45 Total: -79.77 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.02 kcal Total: -60.18 2.97 -57.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251379490.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.140 kcal (2) G-P(sol) polarization free energy of solvation -60.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds