Wall clock time and date at job start Mon Mar 30 2020 03:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.46965 * 2 1 4 4 C 1.50692 * 109.47003 * 239.99806 * 2 1 3 5 5 H 1.08007 * 119.99809 * 239.99810 * 4 2 1 6 6 C 1.37882 * 120.00105 * 60.00577 * 4 2 1 7 7 N 1.31513 * 119.99741 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99879 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47237 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47021 * 120.00069 * 8 6 4 11 11 H 1.48502 * 109.46929 * 239.99713 * 8 6 4 12 12 N 1.46899 * 109.46731 * 120.00002 * 2 1 3 13 13 C 1.46896 * 111.00214 * 55.35997 * 12 2 1 14 14 C 1.46907 * 110.99958 * 291.40380 * 12 2 1 15 15 H 1.09002 * 109.46866 * 58.74066 * 14 12 2 16 16 C 1.53005 * 109.46974 * 178.73985 * 14 12 2 17 17 C 1.52996 * 109.46847 * 180.02562 * 16 14 12 18 18 C 1.52999 * 109.47270 * 299.99731 * 17 16 14 19 19 C 1.53005 * 109.46966 * 60.00341 * 18 17 16 20 20 H 1.08993 * 109.47001 * 59.99881 * 19 18 17 21 21 C 1.52998 * 109.47165 * 180.02562 * 19 18 17 22 22 C 1.52998 * 109.47037 * 298.73895 * 14 12 2 23 23 H 1.08999 * 109.47205 * 173.79048 * 1 2 3 24 24 H 1.08999 * 109.47370 * 293.79231 * 1 2 3 25 25 H 1.09005 * 109.46479 * 53.79207 * 1 2 3 26 26 H 0.97003 * 119.99477 * 180.02562 * 7 6 4 27 27 H 1.09002 * 109.47251 * 296.04369 * 13 12 2 28 28 H 1.08999 * 109.47426 * 56.04408 * 13 12 2 29 29 H 1.09001 * 109.47361 * 176.04674 * 13 12 2 30 30 H 1.08997 * 109.46658 * 59.99931 * 16 14 12 31 31 H 1.08999 * 109.47158 * 300.00348 * 16 14 12 32 32 H 1.09006 * 109.46912 * 179.97438 * 17 16 14 33 33 H 1.08993 * 109.47290 * 60.00213 * 17 16 14 34 34 H 1.08996 * 109.47575 * 180.02562 * 18 17 16 35 35 H 1.09006 * 109.47141 * 300.00679 * 18 17 16 36 36 H 1.09002 * 109.47432 * 59.99617 * 21 19 18 37 37 H 1.08999 * 109.47336 * 179.97438 * 21 19 18 38 38 H 1.09005 * 109.47063 * 299.99739 * 21 19 18 39 39 H 1.08993 * 109.47531 * 300.00078 * 22 14 12 40 40 H 1.08997 * 109.46795 * 60.00618 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3226 -1.1196 -4.0079 9 1 3.1473 -2.2865 -3.6036 10 1 1.1678 -1.5866 -4.8165 11 1 3.1474 -0.1858 -4.8160 12 7 2.0196 -0.6925 1.1995 13 6 1.4601 -2.0477 1.2902 14 6 1.7232 0.0817 2.4122 15 1 0.6470 0.2364 2.4905 16 6 2.2189 -0.6844 3.6403 17 6 1.9096 0.1216 4.9034 18 6 2.6152 1.4772 4.8289 19 6 2.1194 2.2434 3.6008 20 1 1.0433 2.3977 3.6789 21 6 2.8254 3.5986 3.5259 22 6 2.4292 1.4370 2.3373 23 1 -0.3633 -1.0216 -0.1112 24 1 -0.3634 0.4146 0.9403 25 1 -0.3632 0.6071 -0.8293 26 1 0.7083 1.1609 -3.4844 27 1 0.3784 -1.9870 1.4103 28 1 1.6941 -2.5991 0.3795 29 1 1.8926 -2.5627 2.1480 30 1 3.2950 -0.8391 3.5619 31 1 1.7160 -1.6500 3.6936 32 1 2.2624 -0.4244 5.7784 33 1 0.8335 0.2759 4.9815 34 1 2.3952 2.0513 5.7289 35 1 3.6914 1.3228 4.7507 36 1 3.9016 3.4440 3.4477 37 1 2.4726 4.1443 2.6508 38 1 2.6054 4.1731 4.4258 39 1 3.5052 1.2823 2.2590 40 1 2.0759 1.9828 1.4625 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251898939.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:59 Heat of formation + Delta-G solvation = -20.132132 kcal Electronic energy + Delta-G solvation = -16777.681191 eV Core-core repulsion = 14398.383562 eV Total energy + Delta-G solvation = -2379.297628 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.01969 -36.12101 -32.89046 -31.83379 -29.58370 -28.36229 -26.03809 -25.15682 -24.39059 -22.14011 -20.60060 -19.60954 -18.50174 -16.24130 -15.30754 -14.82830 -14.43509 -14.13231 -13.85229 -13.62406 -12.94317 -12.83186 -12.44029 -12.10947 -11.99673 -11.69565 -11.36702 -11.13972 -11.04173 -10.77231 -10.70988 -10.64123 -10.56608 -10.41928 -10.17227 -10.01080 -9.93837 -9.69838 -9.25152 -8.76422 -8.31520 -7.01760 -5.96342 -3.98523 3.32500 3.40287 3.45155 4.45110 4.84633 4.97877 5.06576 5.33445 5.36977 5.43187 5.60008 5.74521 5.80241 5.84804 5.91901 5.97108 6.07088 6.13226 6.19748 6.25615 6.30270 6.40404 6.46940 6.53511 6.59094 6.66773 6.74728 6.84292 6.87983 6.95149 6.97411 7.22564 7.59435 7.76747 7.91699 8.24286 8.46275 8.70512 9.08131 9.66025 11.11313 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.036398 B = 0.007504 C = 0.006801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.087239 B = 3730.499658 C = 4116.138945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.207 3.793 3 H 0.044 0.956 4 C -0.497 4.497 5 H 0.062 0.938 6 C 0.057 3.943 7 N -0.896 5.896 8 Si 0.894 3.106 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.285 1.285 12 N -0.533 5.533 13 C 0.034 3.966 14 C 0.084 3.916 15 H 0.031 0.969 16 C -0.113 4.113 17 C -0.117 4.117 18 C -0.111 4.111 19 C -0.092 4.092 20 H 0.064 0.936 21 C -0.145 4.145 22 C -0.104 4.104 23 H 0.030 0.970 24 H 0.006 0.994 25 H 0.082 0.918 26 H 0.258 0.742 27 H 0.013 0.987 28 H 0.071 0.929 29 H 0.044 0.956 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.053 0.947 35 H 0.060 0.940 36 H 0.053 0.947 37 H 0.055 0.945 38 H 0.048 0.952 39 H 0.065 0.935 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.353 1.001 12.419 12.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.101 3.899 3 H 0.062 0.938 4 C -0.535 4.535 5 H 0.080 0.920 6 C -0.144 4.144 7 N -0.535 5.535 8 Si 0.723 3.277 9 H -0.198 1.198 10 H -0.213 1.213 11 H -0.211 1.211 12 N -0.256 5.256 13 C -0.115 4.115 14 C -0.025 4.025 15 H 0.049 0.951 16 C -0.151 4.151 17 C -0.155 4.155 18 C -0.149 4.149 19 C -0.111 4.111 20 H 0.082 0.918 21 C -0.202 4.202 22 C -0.142 4.142 23 H 0.049 0.951 24 H 0.025 0.975 25 H 0.101 0.899 26 H 0.068 0.932 27 H 0.031 0.969 28 H 0.089 0.911 29 H 0.063 0.937 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.084 0.916 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.798 1.064 12.224 12.401 hybrid contribution -0.728 -0.356 -0.893 1.206 sum 1.070 0.708 11.331 11.404 Atomic orbital electron populations 1.22364 1.01109 1.00133 0.99116 1.19352 0.89528 0.94913 0.86097 0.93780 1.21184 1.30261 1.12329 0.89757 0.92012 1.24928 0.95332 0.95172 0.98945 1.69916 1.37301 1.23177 1.23132 0.86498 0.78501 0.79690 0.83056 1.19789 1.21260 1.21118 1.62369 1.59051 1.01994 1.02193 1.22237 0.96156 0.92000 1.01087 1.21518 0.96795 0.93468 0.90678 0.95126 1.21658 1.01683 0.98117 0.93667 1.21518 1.00200 0.96074 0.97693 1.21579 1.00204 0.95763 0.97309 1.21148 0.99782 0.94740 0.95406 0.91777 1.21804 1.00579 0.96673 1.01139 1.21644 1.01079 0.94890 0.96598 0.95119 0.97482 0.89910 0.93194 0.96873 0.91070 0.93714 0.91580 0.92362 0.92542 0.92518 0.92784 0.92094 0.92810 0.92631 0.93327 0.91625 0.91217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.15 8.05 37.16 0.30 -3.85 16 2 C 0.21 5.24 2.13 -68.87 -0.15 5.09 16 3 H 0.04 1.21 5.93 -51.93 -0.31 0.91 16 4 C -0.50 -13.75 7.90 -34.44 -0.27 -14.03 16 5 H 0.06 1.73 7.02 -52.48 -0.37 1.36 16 6 C 0.06 1.58 5.30 -17.82 -0.09 1.49 16 7 N -0.90 -25.75 11.39 55.43 0.63 -25.12 16 8 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 9 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 N -0.53 -11.60 4.58 -228.30 -1.05 -12.65 16 13 C 0.03 0.68 8.24 60.06 0.49 1.17 16 14 C 0.08 1.56 1.75 -67.71 -0.12 1.44 16 15 H 0.03 0.61 6.40 -51.93 -0.33 0.27 16 16 C -0.11 -1.74 4.80 -26.73 -0.13 -1.87 16 17 C -0.12 -1.50 5.92 -26.73 -0.16 -1.65 16 18 C -0.11 -1.38 5.20 -26.73 -0.14 -1.52 16 19 C -0.09 -1.29 2.72 -90.59 -0.25 -1.54 16 20 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 21 C -0.14 -1.82 9.19 37.16 0.34 -1.48 16 22 C -0.10 -1.83 4.31 -26.70 -0.12 -1.95 16 23 H 0.03 0.74 6.80 -51.93 -0.35 0.39 16 24 H 0.01 0.14 6.37 -51.93 -0.33 -0.19 16 25 H 0.08 2.24 6.26 -51.93 -0.33 1.92 16 26 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 27 H 0.01 0.26 6.61 -51.93 -0.34 -0.08 16 28 H 0.07 1.53 6.66 -51.93 -0.35 1.19 16 29 H 0.04 0.78 6.22 -51.93 -0.32 0.46 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.06 0.88 6.33 -51.93 -0.33 0.55 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.07 1.39 6.25 -51.93 -0.32 1.07 16 LS Contribution 292.93 15.07 4.41 4.41 Total: -1.00 -28.06 292.93 -8.35 -36.41 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -7.05 Total: -0.94 kcal Atomic # 6 Polarization: -18.41 SS G_CDS: -0.28 Total: -18.70 kcal Atomic # 7 Polarization: -37.35 SS G_CDS: -0.41 Total: -37.76 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -28.06 -8.35 -36.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251898939.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.277 kcal (2) G-P(sol) polarization free energy of solvation -28.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds