Wall clock time and date at job start Mon Mar 30 2020 03:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.46965 * 2 1 4 4 C 1.50692 * 109.47003 * 239.99806 * 2 1 3 5 5 H 1.08007 * 119.99809 * 239.99810 * 4 2 1 6 6 C 1.37882 * 120.00105 * 60.00577 * 4 2 1 7 7 N 1.31513 * 119.99741 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99879 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47237 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47021 * 120.00069 * 8 6 4 11 11 H 1.48502 * 109.46929 * 239.99713 * 8 6 4 12 12 N 1.46899 * 109.46731 * 120.00002 * 2 1 3 13 13 C 1.46896 * 111.00214 * 55.35997 * 12 2 1 14 14 C 1.46907 * 110.99958 * 291.40380 * 12 2 1 15 15 H 1.09002 * 109.46866 * 58.74066 * 14 12 2 16 16 C 1.53005 * 109.46974 * 178.73985 * 14 12 2 17 17 C 1.52996 * 109.46847 * 180.02562 * 16 14 12 18 18 C 1.52999 * 109.47270 * 299.99731 * 17 16 14 19 19 C 1.53005 * 109.46966 * 60.00341 * 18 17 16 20 20 H 1.08993 * 109.47001 * 59.99881 * 19 18 17 21 21 C 1.52998 * 109.47165 * 180.02562 * 19 18 17 22 22 C 1.52998 * 109.47037 * 298.73895 * 14 12 2 23 23 H 1.08999 * 109.47205 * 173.79048 * 1 2 3 24 24 H 1.08999 * 109.47370 * 293.79231 * 1 2 3 25 25 H 1.09005 * 109.46479 * 53.79207 * 1 2 3 26 26 H 0.97003 * 119.99477 * 180.02562 * 7 6 4 27 27 H 1.09002 * 109.47251 * 296.04369 * 13 12 2 28 28 H 1.08999 * 109.47426 * 56.04408 * 13 12 2 29 29 H 1.09001 * 109.47361 * 176.04674 * 13 12 2 30 30 H 1.08997 * 109.46658 * 59.99931 * 16 14 12 31 31 H 1.08999 * 109.47158 * 300.00348 * 16 14 12 32 32 H 1.09006 * 109.46912 * 179.97438 * 17 16 14 33 33 H 1.08993 * 109.47290 * 60.00213 * 17 16 14 34 34 H 1.08996 * 109.47575 * 180.02562 * 18 17 16 35 35 H 1.09006 * 109.47141 * 300.00679 * 18 17 16 36 36 H 1.09002 * 109.47432 * 59.99617 * 21 19 18 37 37 H 1.08999 * 109.47336 * 179.97438 * 21 19 18 38 38 H 1.09005 * 109.47063 * 299.99739 * 21 19 18 39 39 H 1.08993 * 109.47531 * 300.00078 * 22 14 12 40 40 H 1.08997 * 109.46795 * 60.00618 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3226 -1.1196 -4.0079 9 1 3.1473 -2.2865 -3.6036 10 1 1.1678 -1.5866 -4.8165 11 1 3.1474 -0.1858 -4.8160 12 7 2.0196 -0.6925 1.1995 13 6 1.4601 -2.0477 1.2902 14 6 1.7232 0.0817 2.4122 15 1 0.6470 0.2364 2.4905 16 6 2.2189 -0.6844 3.6403 17 6 1.9096 0.1216 4.9034 18 6 2.6152 1.4772 4.8289 19 6 2.1194 2.2434 3.6008 20 1 1.0433 2.3977 3.6789 21 6 2.8254 3.5986 3.5259 22 6 2.4292 1.4370 2.3373 23 1 -0.3633 -1.0216 -0.1112 24 1 -0.3634 0.4146 0.9403 25 1 -0.3632 0.6071 -0.8293 26 1 0.7083 1.1609 -3.4844 27 1 0.3784 -1.9870 1.4103 28 1 1.6941 -2.5991 0.3795 29 1 1.8926 -2.5627 2.1480 30 1 3.2950 -0.8391 3.5619 31 1 1.7160 -1.6500 3.6936 32 1 2.2624 -0.4244 5.7784 33 1 0.8335 0.2759 4.9815 34 1 2.3952 2.0513 5.7289 35 1 3.6914 1.3228 4.7507 36 1 3.9016 3.4440 3.4477 37 1 2.4726 4.1443 2.6508 38 1 2.6054 4.1731 4.4258 39 1 3.5052 1.2823 2.2590 40 1 2.0759 1.9828 1.4625 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251898939.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:59 Heat of formation + Delta-G solvation = -36.085658 kcal Electronic energy + Delta-G solvation = -16778.372988 eV Core-core repulsion = 14398.383562 eV Total energy + Delta-G solvation = -2379.989425 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.44848 -37.68369 -34.77810 -33.16640 -31.14962 -30.07631 -27.34283 -27.19644 -26.00308 -23.56265 -22.02114 -20.86072 -20.15575 -18.28357 -16.99873 -16.58303 -15.85220 -15.56215 -15.22424 -15.01410 -14.65606 -14.31614 -13.79493 -13.69416 -13.32694 -13.19070 -13.02417 -12.89704 -12.70433 -12.51541 -12.32138 -12.18345 -11.95096 -11.92822 -11.79406 -11.71395 -11.31134 -10.99335 -10.83044 -10.71527 -10.41383 -8.78439 -8.10271 -6.20003 1.40220 1.41902 1.53947 2.42991 3.18906 3.36523 3.85229 3.86944 4.11496 4.29705 4.36802 4.47542 4.57349 4.63101 4.65830 4.71430 4.75400 4.83992 4.85083 4.90766 4.93584 5.04265 5.10454 5.15607 5.19232 5.24279 5.30352 5.36775 5.39271 5.45887 5.50888 5.58494 5.65286 5.73626 5.82997 6.25088 6.54498 6.83332 6.94931 7.49004 8.96514 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.036398 B = 0.007504 C = 0.006801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.087239 B = 3730.499658 C = 4116.138945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.214 3.786 3 H 0.015 0.985 4 C -0.514 4.514 5 H 0.054 0.946 6 C 0.009 3.991 7 N -0.922 5.922 8 Si 0.958 3.042 9 H -0.268 1.268 10 H -0.281 1.281 11 H -0.281 1.281 12 N -0.544 5.544 13 C 0.038 3.962 14 C 0.083 3.917 15 H 0.018 0.982 16 C -0.107 4.107 17 C -0.112 4.112 18 C -0.107 4.107 19 C -0.088 4.088 20 H 0.061 0.939 21 C -0.142 4.142 22 C -0.100 4.100 23 H 0.027 0.973 24 H 0.021 0.979 25 H 0.056 0.944 26 H 0.260 0.740 27 H 0.011 0.989 28 H 0.051 0.949 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.058 0.942 34 H 0.079 0.921 35 H 0.063 0.937 36 H 0.055 0.945 37 H 0.042 0.958 38 H 0.072 0.928 39 H 0.056 0.944 40 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.852 0.440 14.173 14.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.106 3.894 3 H 0.033 0.967 4 C -0.552 4.552 5 H 0.073 0.927 6 C -0.189 4.189 7 N -0.562 5.562 8 Si 0.784 3.216 9 H -0.193 1.193 10 H -0.207 1.207 11 H -0.207 1.207 12 N -0.267 5.267 13 C -0.110 4.110 14 C -0.026 4.026 15 H 0.036 0.964 16 C -0.145 4.145 17 C -0.150 4.150 18 C -0.144 4.144 19 C -0.107 4.107 20 H 0.079 0.921 21 C -0.200 4.200 22 C -0.137 4.137 23 H 0.046 0.954 24 H 0.040 0.960 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.030 0.970 28 H 0.070 0.930 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.077 0.923 34 H 0.098 0.902 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.061 0.939 38 H 0.091 0.909 39 H 0.075 0.925 40 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 2.300 0.498 13.995 14.192 hybrid contribution -0.883 -0.165 -1.419 1.680 sum 1.417 0.333 12.576 12.660 Atomic orbital electron populations 1.22149 1.00878 0.99335 0.98736 1.19077 0.89508 0.93516 0.87270 0.96731 1.21451 1.30374 1.12302 0.91103 0.92735 1.25701 0.95491 0.95854 1.01832 1.70042 1.38095 1.24294 1.23818 0.85499 0.78056 0.78652 0.79369 1.19264 1.20679 1.20702 1.62298 1.59224 1.02835 1.02362 1.22218 0.96199 0.91108 1.01479 1.21650 0.96246 0.94018 0.90644 0.96384 1.21614 1.01322 0.98327 0.93217 1.21512 1.00512 0.96042 0.96961 1.21566 1.00202 0.95595 0.97050 1.21127 0.99901 0.95242 0.94455 0.92097 1.21785 1.00472 0.95922 1.01773 1.21581 1.00098 0.94771 0.97296 0.95383 0.95986 0.92552 0.93091 0.97026 0.92985 0.90570 0.91840 0.91840 0.89973 0.92329 0.90248 0.91844 0.92564 0.93921 0.90899 0.92539 0.94793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.69 8.05 71.98 0.58 -7.11 16 2 C 0.21 11.14 2.13 44.17 0.09 11.23 16 3 H 0.01 0.86 5.93 -2.39 -0.01 0.84 16 4 C -0.51 -29.08 7.90 25.60 0.20 -28.87 16 5 H 0.05 3.10 7.02 -2.91 -0.02 3.08 16 6 C 0.01 0.53 5.30 84.66 0.45 0.98 16 7 N -0.92 -54.24 11.39 21.45 0.24 -54.00 16 8 Si 0.96 44.72 29.54 68.60 2.03 46.75 16 9 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 10 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 11 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 12 N -0.54 -23.90 4.58 -876.19 -4.01 -27.92 16 13 C 0.04 1.52 8.24 127.69 1.05 2.57 16 14 C 0.08 3.03 1.75 44.92 0.08 3.11 16 15 H 0.02 0.71 6.40 -2.39 -0.02 0.70 16 16 C -0.11 -3.06 4.80 30.59 0.15 -2.91 16 17 C -0.11 -2.50 5.92 30.59 0.18 -2.31 16 18 C -0.11 -2.31 5.20 30.60 0.16 -2.16 16 19 C -0.09 -2.37 2.72 -10.77 -0.03 -2.40 16 20 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 21 C -0.14 -3.38 9.19 71.98 0.66 -2.72 16 22 C -0.10 -3.54 4.31 30.61 0.13 -3.41 16 23 H 0.03 1.38 6.80 -2.39 -0.02 1.36 16 24 H 0.02 1.00 6.37 -2.39 -0.02 0.98 16 25 H 0.06 3.15 6.26 -2.38 -0.01 3.13 16 26 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 27 H 0.01 0.45 6.61 -2.39 -0.02 0.43 16 28 H 0.05 2.24 6.66 -2.39 -0.02 2.23 16 29 H 0.08 2.52 6.22 -2.39 -0.01 2.50 16 30 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.06 1.74 6.33 -2.39 -0.02 1.72 16 32 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 33 H 0.06 1.30 8.14 -2.39 -0.02 1.29 16 34 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 36 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.07 1.38 8.14 -2.38 -0.02 1.37 16 39 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.03 1.42 6.25 -2.39 -0.01 1.41 16 Total: -1.00 -61.02 292.93 2.95 -58.07 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: 0.98 Total: 11.10 kcal Atomic # 6 Polarization: -37.72 SS G_CDS: 3.71 Total: -34.01 kcal Atomic # 7 Polarization: -78.14 SS G_CDS: -3.77 Total: -81.91 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -61.02 2.95 -58.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251898939.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.984 kcal (2) G-P(sol) polarization free energy of solvation -61.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds