Wall clock time and date at job start Mon Mar 30 2020 03:35:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.09007 * 110.01380 * 2 1
4 4 C 1.54263 * 110.03437 * 238.61178 * 2 1 3
5 5 C 1.54895 * 104.19468 * 217.09918 * 4 2 1
6 6 C 1.54886 * 102.74621 * 37.94513 * 5 4 2
7 7 H 1.09007 * 110.48967 * 80.86450 * 6 5 4
8 8 N 1.46903 * 110.48871 * 203.37514 * 6 5 4
9 9 C 1.46893 * 111.00119 * 271.75845 * 8 6 5
10 10 C 1.53000 * 109.47186 * 179.97438 * 9 8 6
11 11 C 1.53001 * 109.47355 * 179.97438 * 10 9 8
12 12 C 1.50694 * 109.47168 * 180.02562 * 11 10 9
13 13 H 1.08000 * 120.00563 * 0.02562 * 12 11 10
14 14 C 1.37885 * 119.99902 * 180.02562 * 12 11 10
15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 11
16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 11
17 17 H 1.48506 * 109.46985 * 179.97438 * 16 14 12
18 18 H 1.48494 * 109.47276 * 299.99832 * 16 14 12
19 19 H 1.48498 * 109.47150 * 60.00043 * 16 14 12
20 20 C 1.54086 * 109.93164 * 121.47453 * 2 1 3
21 21 H 1.09000 * 110.15843 * 0.12849 * 20 2 1
22 22 C 1.53003 * 110.00725 * 238.63009 * 20 2 1
23 23 H 1.09005 * 109.46545 * 179.97438 * 1 2 3
24 24 H 1.08999 * 109.47444 * 299.93252 * 1 2 3
25 25 H 1.08997 * 109.47065 * 59.94080 * 1 2 3
26 26 H 1.09001 * 110.48878 * 98.42903 * 4 2 1
27 27 H 1.08994 * 110.60025 * 335.83416 * 4 2 1
28 28 H 1.08993 * 110.75805 * 279.62604 * 5 4 2
29 29 H 1.09002 * 110.90848 * 156.32805 * 5 4 2
30 30 H 1.00908 * 110.99499 * 35.70941 * 8 6 5
31 31 H 1.09002 * 109.47091 * 59.99841 * 9 8 6
32 32 H 1.08992 * 109.47497 * 299.99732 * 9 8 6
33 33 H 1.09002 * 109.46807 * 60.00192 * 10 9 8
34 34 H 1.08998 * 109.47285 * 299.99794 * 10 9 8
35 35 H 1.09007 * 109.46922 * 59.99890 * 11 10 9
36 36 H 1.09003 * 109.46836 * 300.00646 * 11 10 9
37 37 H 0.97001 * 119.99646 * 179.97438 * 15 14 12
38 38 H 1.09003 * 109.46765 * 302.96993 * 22 20 2
39 39 H 1.09002 * 109.46984 * 62.97703 * 22 20 2
40 40 H 1.09001 * 109.46601 * 182.97322 * 22 20 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.9030 1.0242 0.0000
4 6 2.0584 -0.7548 -1.2372
5 6 3.3138 -1.5002 -0.7198
6 6 2.8875 -1.9408 0.7026
7 1 2.2792 -2.8442 0.6560
8 7 4.0685 -2.1610 1.5482
9 6 4.5549 -3.5415 1.4241
10 6 5.7829 -3.7317 2.3167
11 6 6.2892 -5.1698 2.1879
12 6 7.4983 -5.3573 3.0675
13 1 7.8684 -4.5334 3.6596
14 6 8.1322 -6.5808 3.1165
15 7 7.6812 -7.5843 2.3959
16 14 9.6314 -6.8130 4.2064
17 1 10.1227 -8.2089 4.0814
18 1 10.7001 -5.8720 3.7852
19 1 9.2627 -6.5432 5.6193
20 6 2.0552 -0.7563 1.2354
21 1 1.2213 -1.1248 1.8329
22 6 2.9373 0.1669 2.0785
23 1 -0.3632 -1.0278 -0.0005
24 1 -0.3634 0.5128 0.8906
25 1 -0.3633 0.5147 -0.8894
26 1 2.3297 -0.0526 -2.0255
27 1 1.3153 -1.4651 -1.5994
28 1 4.1710 -0.8285 -0.6755
29 1 3.5357 -2.3670 -1.3424
30 1 4.7983 -1.4994 1.3294
31 1 4.8258 -3.7393 0.3870
32 1 3.7704 -4.2323 1.7328
33 1 5.5123 -3.5337 3.3538
34 1 6.5673 -3.0410 2.0076
35 1 6.5596 -5.3682 1.1507
36 1 5.5045 -5.8603 2.4972
37 1 8.1273 -8.4450 2.4300
38 1 3.7532 0.5493 1.4653
39 1 2.3405 0.9999 2.4500
40 1 3.3464 -0.3911 2.9207
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000252135425.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:35:27
Heat of formation + Delta-G solvation = -40.928760 kcal
Electronic energy + Delta-G solvation = -15617.937499 eV
Core-core repulsion = 13237.738061 eV
Total energy + Delta-G solvation = -2380.199438 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 225.179 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-39.32989 -35.55061 -33.32163 -31.47595 -31.01494 -29.46822 -26.37821 -24.78068
-23.80031 -22.32317 -20.59095 -20.12626 -18.85874 -16.38141 -15.71941 -15.60522
-14.62998 -14.42036 -14.03422 -13.64843 -13.47974 -13.13145 -12.70868 -12.46384
-12.32477 -11.95903 -11.80527 -11.70921 -11.24670 -10.85939 -10.82404 -10.70073
-10.67718 -10.53382 -10.46319 -10.41739 -10.25392 -9.64659 -9.27918 -9.01800
-8.30746 -8.00117 -5.96171 -3.98159 3.36100 3.39979 3.42909 4.32645
4.49602 4.55725 4.62900 4.86461 5.17712 5.28863 5.33439 5.39439
5.40317 5.48028 5.52389 5.63303 5.70474 5.77477 5.84431 5.86284
5.95953 5.99186 6.03736 6.14627 6.21427 6.24666 6.38639 6.42406
6.54279 6.78330 6.85329 7.18858 7.46222 7.71406 7.73755 7.88473
8.04600 8.48049 9.08966 9.65532 11.15288
Molecular weight = 225.18amu
Principal moments of inertia in cm(-1)
A = 0.062916 B = 0.004165 C = 0.004039
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 444.930247 B = 6720.570757 C = 6930.315358
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.095 4.095
3 H 0.070 0.930
4 C -0.117 4.117
5 C -0.155 4.155
6 C 0.086 3.914
7 H 0.078 0.922
8 N -0.681 5.681
9 C 0.058 3.942
10 C -0.107 4.107
11 C 0.022 3.978
12 C -0.519 4.519
13 H 0.054 0.946
14 C 0.055 3.945
15 N -0.897 5.897
16 Si 0.892 3.108
17 H -0.288 1.288
18 H -0.277 1.277
19 H -0.277 1.277
20 C -0.082 4.082
21 H 0.070 0.930
22 C -0.135 4.135
23 H 0.054 0.946
24 H 0.053 0.947
25 H 0.050 0.950
26 H 0.060 0.940
27 H 0.065 0.935
28 H 0.066 0.934
29 H 0.064 0.936
30 H 0.338 0.662
31 H 0.023 0.977
32 H 0.065 0.935
33 H 0.055 0.945
34 H 0.044 0.956
35 H 0.013 0.987
36 H 0.015 0.985
37 H 0.260 0.740
38 H 0.046 0.954
39 H 0.041 0.959
40 H 0.074 0.926
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.460 14.774 -5.802 20.179
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.114 4.114
3 H 0.089 0.911
4 C -0.155 4.155
5 C -0.194 4.194
6 C -0.024 4.024
7 H 0.097 0.903
8 N -0.311 5.311
9 C -0.070 4.070
10 C -0.145 4.145
11 C -0.015 4.015
12 C -0.557 4.557
13 H 0.073 0.927
14 C -0.145 4.145
15 N -0.537 5.537
16 Si 0.720 3.280
17 H -0.213 1.213
18 H -0.203 1.203
19 H -0.202 1.202
20 C -0.101 4.101
21 H 0.089 0.911
22 C -0.192 4.192
23 H 0.073 0.927
24 H 0.072 0.928
25 H 0.069 0.931
26 H 0.079 0.921
27 H 0.083 0.917
28 H 0.085 0.915
29 H 0.083 0.917
30 H 0.156 0.844
31 H 0.041 0.959
32 H 0.083 0.917
33 H 0.074 0.926
34 H 0.062 0.938
35 H 0.031 0.969
36 H 0.034 0.966
37 H 0.070 0.930
38 H 0.065 0.935
39 H 0.060 0.940
40 H 0.093 0.907
Dipole moment (debyes) X Y Z Total
from point charges -12.788 14.440 -5.255 19.991
hybrid contribution 1.254 -0.252 -0.419 1.346
sum -11.534 14.187 -5.675 19.145
Atomic orbital electron populations
1.21876 0.95325 1.01676 1.01226 1.21906 0.95357 0.99351 0.94810
0.91137 1.22340 0.97278 0.98833 0.97024 1.23211 0.97906 1.00006
0.98271 1.22437 0.92873 0.97677 0.89443 0.90342 1.60648 1.08698
1.05508 1.56198 1.22140 0.98314 0.88368 0.98186 1.21617 0.94096
1.00353 0.98414 1.19060 0.95769 0.89795 0.96922 1.21234 1.12350
0.96440 1.25708 0.92738 1.25034 0.97541 0.96114 0.95847 1.69961
1.40824 1.02148 1.40732 0.86654 0.83175 0.77006 0.81139 1.21328
1.20278 1.20223 1.21829 0.97699 0.95118 0.95467 0.91134 1.21685
0.98812 0.98178 1.00570 0.92653 0.92835 0.93072 0.92121 0.91657
0.91520 0.91747 0.84377 0.95895 0.91670 0.92632 0.93771 0.96870
0.96627 0.93011 0.93488 0.93963 0.90736
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.20 8.84 37.15 0.33 -0.87 16
2 C -0.10 -0.90 3.16 -89.39 -0.28 -1.18 16
3 H 0.07 0.66 7.68 -51.93 -0.40 0.26 16
4 C -0.12 -1.12 6.36 -25.07 -0.16 -1.28 16
5 C -0.15 -1.75 6.45 -24.74 -0.16 -1.91 16
6 C 0.09 1.09 3.02 -66.05 -0.20 0.89 16
7 H 0.08 1.05 7.85 -51.93 -0.41 0.64 16
8 N -0.68 -10.00 4.82 -104.98 -0.51 -10.51 16
9 C 0.06 1.03 5.54 -3.83 -0.02 1.01 16
10 C -0.11 -2.26 5.41 -26.73 -0.14 -2.41 16
11 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16
12 C -0.52 -15.06 9.11 -34.44 -0.31 -15.37 16
13 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16
14 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16
15 N -0.90 -27.46 13.29 55.43 0.74 -26.72 16
16 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16
17 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16
18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16
19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16
20 C -0.08 -0.90 3.14 -89.39 -0.28 -1.18 16
21 H 0.07 0.80 7.68 -51.93 -0.40 0.40 16
22 C -0.13 -1.48 8.01 37.16 0.30 -1.19 16
23 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16
24 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16
25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16
26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16
27 H 0.06 0.61 7.86 -51.93 -0.41 0.20 16
28 H 0.07 0.76 7.81 -51.93 -0.41 0.35 16
29 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16
30 H 0.34 4.75 7.70 -39.29 -0.30 4.45 16
31 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16
32 H 0.06 1.19 8.08 -51.93 -0.42 0.77 16
33 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16
34 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16
35 H 0.01 0.36 8.14 -51.92 -0.42 -0.06 16
36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16
37 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16
38 H 0.05 0.50 7.99 -51.93 -0.42 0.09 16
39 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16
40 H 0.07 0.94 7.38 -51.93 -0.38 0.55 16
LS Contribution 314.07 15.07 4.73 4.73
Total: -1.00 -29.59 314.07 -8.96 -38.55
By element:
Atomic # 1 Polarization: 6.21 SS G_CDS: -7.73 Total: -1.52 kcal
Atomic # 6 Polarization: -20.35 SS G_CDS: -1.17 Total: -21.53 kcal
Atomic # 7 Polarization: -37.46 SS G_CDS: 0.23 Total: -37.23 kcal
Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal
Total LS contribution 4.73 Total: 4.73 kcal
Total: -29.59 -8.96 -38.55 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000252135425.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -2.382 kcal
(2) G-P(sol) polarization free energy of solvation -29.588 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.970 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.959 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.547 kcal
(6) G-S(sol) free energy of system = (1) + (5) -40.929 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds