Wall clock time and date at job start Mon Mar 30 2020 03:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 110.01380 * 2 1 4 4 C 1.54263 * 110.03437 * 238.61178 * 2 1 3 5 5 C 1.54895 * 104.19468 * 217.09918 * 4 2 1 6 6 C 1.54886 * 102.74621 * 37.94513 * 5 4 2 7 7 H 1.09007 * 110.48967 * 80.86450 * 6 5 4 8 8 N 1.46903 * 110.48871 * 203.37514 * 6 5 4 9 9 C 1.46893 * 111.00119 * 271.75845 * 8 6 5 10 10 C 1.53000 * 109.47186 * 179.97438 * 9 8 6 11 11 C 1.53001 * 109.47355 * 179.97438 * 10 9 8 12 12 C 1.50694 * 109.47168 * 180.02562 * 11 10 9 13 13 H 1.08000 * 120.00563 * 0.02562 * 12 11 10 14 14 C 1.37885 * 119.99902 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46985 * 179.97438 * 16 14 12 18 18 H 1.48494 * 109.47276 * 299.99832 * 16 14 12 19 19 H 1.48498 * 109.47150 * 60.00043 * 16 14 12 20 20 C 1.54086 * 109.93164 * 121.47453 * 2 1 3 21 21 H 1.09000 * 110.15843 * 0.12849 * 20 2 1 22 22 C 1.53003 * 110.00725 * 238.63009 * 20 2 1 23 23 H 1.09005 * 109.46545 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47444 * 299.93252 * 1 2 3 25 25 H 1.08997 * 109.47065 * 59.94080 * 1 2 3 26 26 H 1.09001 * 110.48878 * 98.42903 * 4 2 1 27 27 H 1.08994 * 110.60025 * 335.83416 * 4 2 1 28 28 H 1.08993 * 110.75805 * 279.62604 * 5 4 2 29 29 H 1.09002 * 110.90848 * 156.32805 * 5 4 2 30 30 H 1.00908 * 110.99499 * 35.70941 * 8 6 5 31 31 H 1.09002 * 109.47091 * 59.99841 * 9 8 6 32 32 H 1.08992 * 109.47497 * 299.99732 * 9 8 6 33 33 H 1.09002 * 109.46807 * 60.00192 * 10 9 8 34 34 H 1.08998 * 109.47285 * 299.99794 * 10 9 8 35 35 H 1.09007 * 109.46922 * 59.99890 * 11 10 9 36 36 H 1.09003 * 109.46836 * 300.00646 * 11 10 9 37 37 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 38 38 H 1.09003 * 109.46765 * 302.96993 * 22 20 2 39 39 H 1.09002 * 109.46984 * 62.97703 * 22 20 2 40 40 H 1.09001 * 109.46601 * 182.97322 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9030 1.0242 0.0000 4 6 2.0584 -0.7548 -1.2372 5 6 3.3138 -1.5002 -0.7198 6 6 2.8875 -1.9408 0.7026 7 1 2.2792 -2.8442 0.6560 8 7 4.0685 -2.1610 1.5482 9 6 4.5549 -3.5415 1.4241 10 6 5.7829 -3.7317 2.3167 11 6 6.2892 -5.1698 2.1879 12 6 7.4983 -5.3573 3.0675 13 1 7.8684 -4.5334 3.6596 14 6 8.1322 -6.5808 3.1165 15 7 7.6812 -7.5843 2.3959 16 14 9.6314 -6.8130 4.2064 17 1 10.1227 -8.2089 4.0814 18 1 10.7001 -5.8720 3.7852 19 1 9.2627 -6.5432 5.6193 20 6 2.0552 -0.7563 1.2354 21 1 1.2213 -1.1248 1.8329 22 6 2.9373 0.1669 2.0785 23 1 -0.3632 -1.0278 -0.0005 24 1 -0.3634 0.5128 0.8906 25 1 -0.3633 0.5147 -0.8894 26 1 2.3297 -0.0526 -2.0255 27 1 1.3153 -1.4651 -1.5994 28 1 4.1710 -0.8285 -0.6755 29 1 3.5357 -2.3670 -1.3424 30 1 4.7983 -1.4994 1.3294 31 1 4.8258 -3.7393 0.3870 32 1 3.7704 -4.2323 1.7328 33 1 5.5123 -3.5337 3.3538 34 1 6.5673 -3.0410 2.0076 35 1 6.5596 -5.3682 1.1507 36 1 5.5045 -5.8603 2.4972 37 1 8.1273 -8.4450 2.4300 38 1 3.7532 0.5493 1.4653 39 1 2.3405 0.9999 2.4500 40 1 3.3464 -0.3911 2.9207 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252135425.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:27 Heat of formation + Delta-G solvation = -40.928760 kcal Electronic energy + Delta-G solvation = -15617.937499 eV Core-core repulsion = 13237.738061 eV Total energy + Delta-G solvation = -2380.199438 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.32989 -35.55061 -33.32163 -31.47595 -31.01494 -29.46822 -26.37821 -24.78068 -23.80031 -22.32317 -20.59095 -20.12626 -18.85874 -16.38141 -15.71941 -15.60522 -14.62998 -14.42036 -14.03422 -13.64843 -13.47974 -13.13145 -12.70868 -12.46384 -12.32477 -11.95903 -11.80527 -11.70921 -11.24670 -10.85939 -10.82404 -10.70073 -10.67718 -10.53382 -10.46319 -10.41739 -10.25392 -9.64659 -9.27918 -9.01800 -8.30746 -8.00117 -5.96171 -3.98159 3.36100 3.39979 3.42909 4.32645 4.49602 4.55725 4.62900 4.86461 5.17712 5.28863 5.33439 5.39439 5.40317 5.48028 5.52389 5.63303 5.70474 5.77477 5.84431 5.86284 5.95953 5.99186 6.03736 6.14627 6.21427 6.24666 6.38639 6.42406 6.54279 6.78330 6.85329 7.18858 7.46222 7.71406 7.73755 7.88473 8.04600 8.48049 9.08966 9.65532 11.15288 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.062916 B = 0.004165 C = 0.004039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.930247 B = 6720.570757 C = 6930.315358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.095 4.095 3 H 0.070 0.930 4 C -0.117 4.117 5 C -0.155 4.155 6 C 0.086 3.914 7 H 0.078 0.922 8 N -0.681 5.681 9 C 0.058 3.942 10 C -0.107 4.107 11 C 0.022 3.978 12 C -0.519 4.519 13 H 0.054 0.946 14 C 0.055 3.945 15 N -0.897 5.897 16 Si 0.892 3.108 17 H -0.288 1.288 18 H -0.277 1.277 19 H -0.277 1.277 20 C -0.082 4.082 21 H 0.070 0.930 22 C -0.135 4.135 23 H 0.054 0.946 24 H 0.053 0.947 25 H 0.050 0.950 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.338 0.662 31 H 0.023 0.977 32 H 0.065 0.935 33 H 0.055 0.945 34 H 0.044 0.956 35 H 0.013 0.987 36 H 0.015 0.985 37 H 0.260 0.740 38 H 0.046 0.954 39 H 0.041 0.959 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.460 14.774 -5.802 20.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.114 4.114 3 H 0.089 0.911 4 C -0.155 4.155 5 C -0.194 4.194 6 C -0.024 4.024 7 H 0.097 0.903 8 N -0.311 5.311 9 C -0.070 4.070 10 C -0.145 4.145 11 C -0.015 4.015 12 C -0.557 4.557 13 H 0.073 0.927 14 C -0.145 4.145 15 N -0.537 5.537 16 Si 0.720 3.280 17 H -0.213 1.213 18 H -0.203 1.203 19 H -0.202 1.202 20 C -0.101 4.101 21 H 0.089 0.911 22 C -0.192 4.192 23 H 0.073 0.927 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.156 0.844 31 H 0.041 0.959 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.031 0.969 36 H 0.034 0.966 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.788 14.440 -5.255 19.991 hybrid contribution 1.254 -0.252 -0.419 1.346 sum -11.534 14.187 -5.675 19.145 Atomic orbital electron populations 1.21876 0.95325 1.01676 1.01226 1.21906 0.95357 0.99351 0.94810 0.91137 1.22340 0.97278 0.98833 0.97024 1.23211 0.97906 1.00006 0.98271 1.22437 0.92873 0.97677 0.89443 0.90342 1.60648 1.08698 1.05508 1.56198 1.22140 0.98314 0.88368 0.98186 1.21617 0.94096 1.00353 0.98414 1.19060 0.95769 0.89795 0.96922 1.21234 1.12350 0.96440 1.25708 0.92738 1.25034 0.97541 0.96114 0.95847 1.69961 1.40824 1.02148 1.40732 0.86654 0.83175 0.77006 0.81139 1.21328 1.20278 1.20223 1.21829 0.97699 0.95118 0.95467 0.91134 1.21685 0.98812 0.98178 1.00570 0.92653 0.92835 0.93072 0.92121 0.91657 0.91520 0.91747 0.84377 0.95895 0.91670 0.92632 0.93771 0.96870 0.96627 0.93011 0.93488 0.93963 0.90736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 8.84 37.15 0.33 -0.87 16 2 C -0.10 -0.90 3.16 -89.39 -0.28 -1.18 16 3 H 0.07 0.66 7.68 -51.93 -0.40 0.26 16 4 C -0.12 -1.12 6.36 -25.07 -0.16 -1.28 16 5 C -0.15 -1.75 6.45 -24.74 -0.16 -1.91 16 6 C 0.09 1.09 3.02 -66.05 -0.20 0.89 16 7 H 0.08 1.05 7.85 -51.93 -0.41 0.64 16 8 N -0.68 -10.00 4.82 -104.98 -0.51 -10.51 16 9 C 0.06 1.03 5.54 -3.83 -0.02 1.01 16 10 C -0.11 -2.26 5.41 -26.73 -0.14 -2.41 16 11 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 12 C -0.52 -15.06 9.11 -34.44 -0.31 -15.37 16 13 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 15 N -0.90 -27.46 13.29 55.43 0.74 -26.72 16 16 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 17 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 C -0.08 -0.90 3.14 -89.39 -0.28 -1.18 16 21 H 0.07 0.80 7.68 -51.93 -0.40 0.40 16 22 C -0.13 -1.48 8.01 37.16 0.30 -1.19 16 23 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.61 7.86 -51.93 -0.41 0.20 16 28 H 0.07 0.76 7.81 -51.93 -0.41 0.35 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.34 4.75 7.70 -39.29 -0.30 4.45 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 1.19 8.08 -51.93 -0.42 0.77 16 33 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.01 0.36 8.14 -51.92 -0.42 -0.06 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 38 H 0.05 0.50 7.99 -51.93 -0.42 0.09 16 39 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.07 0.94 7.38 -51.93 -0.38 0.55 16 LS Contribution 314.07 15.07 4.73 4.73 Total: -1.00 -29.59 314.07 -8.96 -38.55 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -7.73 Total: -1.52 kcal Atomic # 6 Polarization: -20.35 SS G_CDS: -1.17 Total: -21.53 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: 0.23 Total: -37.23 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.59 -8.96 -38.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252135425.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.382 kcal (2) G-P(sol) polarization free energy of solvation -29.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds