Wall clock time and date at job start Mon Mar 30 2020 03:35:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.09007 * 110.01380 * 2 1
4 4 C 1.54263 * 110.03437 * 238.61178 * 2 1 3
5 5 C 1.54895 * 104.19468 * 217.09918 * 4 2 1
6 6 C 1.54886 * 102.74621 * 37.94513 * 5 4 2
7 7 H 1.09007 * 110.48967 * 80.86450 * 6 5 4
8 8 N 1.46903 * 110.48871 * 203.37514 * 6 5 4
9 9 C 1.46893 * 111.00119 * 271.75845 * 8 6 5
10 10 C 1.53000 * 109.47186 * 179.97438 * 9 8 6
11 11 C 1.53001 * 109.47355 * 179.97438 * 10 9 8
12 12 C 1.50694 * 109.47168 * 180.02562 * 11 10 9
13 13 H 1.08000 * 120.00563 * 0.02562 * 12 11 10
14 14 C 1.37885 * 119.99902 * 180.02562 * 12 11 10
15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 11
16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 11
17 17 H 1.48506 * 109.46985 * 179.97438 * 16 14 12
18 18 H 1.48494 * 109.47276 * 299.99832 * 16 14 12
19 19 H 1.48498 * 109.47150 * 60.00043 * 16 14 12
20 20 C 1.54086 * 109.93164 * 121.47453 * 2 1 3
21 21 H 1.09000 * 110.15843 * 0.12849 * 20 2 1
22 22 C 1.53003 * 110.00725 * 238.63009 * 20 2 1
23 23 H 1.09005 * 109.46545 * 179.97438 * 1 2 3
24 24 H 1.08999 * 109.47444 * 299.93252 * 1 2 3
25 25 H 1.08997 * 109.47065 * 59.94080 * 1 2 3
26 26 H 1.09001 * 110.48878 * 98.42903 * 4 2 1
27 27 H 1.08994 * 110.60025 * 335.83416 * 4 2 1
28 28 H 1.08993 * 110.75805 * 279.62604 * 5 4 2
29 29 H 1.09002 * 110.90848 * 156.32805 * 5 4 2
30 30 H 1.00908 * 110.99499 * 35.70941 * 8 6 5
31 31 H 1.09002 * 109.47091 * 59.99841 * 9 8 6
32 32 H 1.08992 * 109.47497 * 299.99732 * 9 8 6
33 33 H 1.09002 * 109.46807 * 60.00192 * 10 9 8
34 34 H 1.08998 * 109.47285 * 299.99794 * 10 9 8
35 35 H 1.09007 * 109.46922 * 59.99890 * 11 10 9
36 36 H 1.09003 * 109.46836 * 300.00646 * 11 10 9
37 37 H 0.97001 * 119.99646 * 179.97438 * 15 14 12
38 38 H 1.09003 * 109.46765 * 302.96993 * 22 20 2
39 39 H 1.09002 * 109.46984 * 62.97703 * 22 20 2
40 40 H 1.09001 * 109.46601 * 182.97322 * 22 20 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.9030 1.0242 0.0000
4 6 2.0584 -0.7548 -1.2372
5 6 3.3138 -1.5002 -0.7198
6 6 2.8875 -1.9408 0.7026
7 1 2.2792 -2.8442 0.6560
8 7 4.0685 -2.1610 1.5482
9 6 4.5549 -3.5415 1.4241
10 6 5.7829 -3.7317 2.3167
11 6 6.2892 -5.1698 2.1879
12 6 7.4983 -5.3573 3.0675
13 1 7.8684 -4.5334 3.6596
14 6 8.1322 -6.5808 3.1165
15 7 7.6812 -7.5843 2.3959
16 14 9.6314 -6.8130 4.2064
17 1 10.1227 -8.2089 4.0814
18 1 10.7001 -5.8720 3.7852
19 1 9.2627 -6.5432 5.6193
20 6 2.0552 -0.7563 1.2354
21 1 1.2213 -1.1248 1.8329
22 6 2.9373 0.1669 2.0785
23 1 -0.3632 -1.0278 -0.0005
24 1 -0.3634 0.5128 0.8906
25 1 -0.3633 0.5147 -0.8894
26 1 2.3297 -0.0526 -2.0255
27 1 1.3153 -1.4651 -1.5994
28 1 4.1710 -0.8285 -0.6755
29 1 3.5357 -2.3670 -1.3424
30 1 4.7983 -1.4994 1.3294
31 1 4.8258 -3.7393 0.3870
32 1 3.7704 -4.2323 1.7328
33 1 5.5123 -3.5337 3.3538
34 1 6.5673 -3.0410 2.0076
35 1 6.5596 -5.3682 1.1507
36 1 5.5045 -5.8603 2.4972
37 1 8.1273 -8.4450 2.4300
38 1 3.7532 0.5493 1.4653
39 1 2.3405 0.9999 2.4500
40 1 3.3464 -0.3911 2.9207
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000252135425.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:35:27
Heat of formation + Delta-G solvation = -57.071043 kcal
Electronic energy + Delta-G solvation = -15618.637480 eV
Core-core repulsion = 13237.738061 eV
Total energy + Delta-G solvation = -2380.899420 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 225.179 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-40.27228 -37.01147 -35.19772 -33.12430 -31.88655 -30.70158 -28.01627 -26.04806
-24.67146 -24.03528 -21.99859 -21.37386 -19.81409 -18.50694 -16.93859 -16.66587
-16.44124 -15.98557 -15.12268 -14.72543 -14.53509 -14.31878 -13.95996 -13.80870
-13.61245 -13.36250 -13.10208 -12.85994 -12.69844 -12.52726 -12.41299 -12.31859
-11.66390 -11.61258 -11.54093 -11.46710 -11.36492 -11.27247 -11.22598 -10.95009
-10.55208 -9.21659 -8.20261 -6.31638 1.39819 1.43416 1.51327 2.41098
3.12598 3.23008 3.69262 3.73723 3.97517 4.20584 4.32346 4.42729
4.46580 4.47636 4.60473 4.68050 4.71389 4.73319 4.79859 4.90214
4.93908 5.01649 5.02690 5.12314 5.20377 5.23368 5.26744 5.34113
5.37568 5.41331 5.51775 5.56967 5.68997 5.75012 5.85430 6.15142
6.28540 6.54314 6.85171 7.37586 8.91573
Molecular weight = 225.18amu
Principal moments of inertia in cm(-1)
A = 0.062916 B = 0.004165 C = 0.004039
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 444.930247 B = 6720.570757 C = 6930.315358
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C -0.090 4.090
3 H 0.077 0.923
4 C -0.112 4.112
5 C -0.153 4.153
6 C 0.082 3.918
7 H 0.068 0.932
8 N -0.679 5.679
9 C 0.073 3.927
10 C -0.091 4.091
11 C 0.025 3.975
12 C -0.545 4.545
13 H 0.060 0.940
14 C -0.002 4.002
15 N -0.934 5.934
16 Si 0.967 3.033
17 H -0.282 1.282
18 H -0.266 1.266
19 H -0.267 1.267
20 C -0.079 4.079
21 H 0.067 0.933
22 C -0.131 4.131
23 H 0.051 0.949
24 H 0.057 0.943
25 H 0.061 0.939
26 H 0.073 0.927
27 H 0.067 0.933
28 H 0.068 0.932
29 H 0.055 0.945
30 H 0.343 0.657
31 H 0.020 0.980
32 H 0.057 0.943
33 H 0.052 0.948
34 H 0.050 0.950
35 H -0.010 1.010
36 H -0.010 1.010
37 H 0.264 0.736
38 H 0.049 0.951
39 H 0.055 0.945
40 H 0.055 0.945
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.441 16.345 -5.653 21.305
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.109 4.109
3 H 0.096 0.904
4 C -0.150 4.150
5 C -0.192 4.192
6 C -0.028 4.028
7 H 0.086 0.914
8 N -0.309 5.309
9 C -0.056 4.056
10 C -0.129 4.129
11 C -0.012 4.012
12 C -0.583 4.583
13 H 0.078 0.922
14 C -0.200 4.200
15 N -0.575 5.575
16 Si 0.791 3.209
17 H -0.207 1.207
18 H -0.191 1.191
19 H -0.192 1.192
20 C -0.098 4.098
21 H 0.085 0.915
22 C -0.189 4.189
23 H 0.070 0.930
24 H 0.076 0.924
25 H 0.080 0.920
26 H 0.091 0.909
27 H 0.086 0.914
28 H 0.087 0.913
29 H 0.074 0.926
30 H 0.162 0.838
31 H 0.038 0.962
32 H 0.075 0.925
33 H 0.070 0.930
34 H 0.068 0.932
35 H 0.008 0.992
36 H 0.008 0.992
37 H 0.072 0.928
38 H 0.068 0.932
39 H 0.074 0.926
40 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges -12.782 16.035 -5.110 21.133
hybrid contribution 1.213 -0.748 -0.486 1.505
sum -11.570 15.287 -5.596 19.971
Atomic orbital electron populations
1.21859 0.94347 1.01713 1.02016 1.21868 0.96141 0.99287 0.93608
0.90422 1.22332 0.96324 0.98948 0.97426 1.23163 0.98925 0.99929
0.97176 1.22517 0.91977 0.98150 0.90189 0.91390 1.60589 1.09359
1.03710 1.57194 1.21822 0.96540 0.90249 0.97009 1.21367 0.95632
0.96902 0.99046 1.18969 0.94679 0.92590 0.95004 1.21683 1.13327
0.96990 1.26289 0.92205 1.26018 1.00964 0.95691 0.97284 1.70098
1.42438 1.02723 1.42209 0.85475 0.78969 0.77252 0.79203 1.20748
1.19070 1.19157 1.21816 0.97247 0.94537 0.96241 0.91473 1.21638
0.99035 0.98307 0.99910 0.93021 0.92418 0.91951 0.90860 0.91397
0.91319 0.92649 0.83751 0.96195 0.92475 0.92953 0.93160 0.99187
0.99182 0.92751 0.93189 0.92626 0.92551
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.04 8.84 71.98 0.64 -1.40 16
2 C -0.09 -1.50 3.16 -10.00 -0.03 -1.53 16
3 H 0.08 1.22 7.68 -2.38 -0.02 1.20 16
4 C -0.11 -1.93 6.36 31.67 0.20 -1.73 16
5 C -0.15 -3.27 6.45 31.89 0.21 -3.07 16
6 C 0.08 2.00 3.02 45.99 0.14 2.14 16
7 H 0.07 1.80 7.85 -2.38 -0.02 1.79 16
8 N -0.68 -19.58 4.82 -486.05 -2.34 -21.92 16
9 C 0.07 2.60 5.54 86.30 0.48 3.08 16
10 C -0.09 -3.91 5.41 30.59 0.17 -3.75 16
11 C 0.03 1.38 4.97 29.85 0.15 1.53 16
12 C -0.54 -31.95 9.11 25.60 0.23 -31.72 16
13 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16
14 C 0.00 -0.12 5.46 84.66 0.46 0.34 16
15 N -0.93 -58.07 13.29 21.45 0.28 -57.78 16
16 Si 0.97 45.02 29.54 68.60 2.03 47.04 16
17 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16
18 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16
19 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16
20 C -0.08 -1.63 3.14 -10.00 -0.03 -1.66 16
21 H 0.07 1.43 7.68 -2.39 -0.02 1.41 16
22 C -0.13 -2.68 8.01 71.98 0.58 -2.10 16
23 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16
24 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16
25 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16
26 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16
27 H 0.07 1.14 7.86 -2.39 -0.02 1.12 16
28 H 0.07 1.45 7.81 -2.39 -0.02 1.43 16
29 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16
30 H 0.34 9.32 7.70 -89.69 -0.69 8.63 16
31 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16
32 H 0.06 2.12 8.08 -2.39 -0.02 2.10 16
33 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16
34 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16
35 H -0.01 -0.60 8.14 -2.38 -0.02 -0.62 16
36 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16
37 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16
38 H 0.05 0.98 7.99 -2.39 -0.02 0.96 16
39 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16
40 H 0.06 1.36 7.38 -2.39 -0.02 1.34 16
Total: -1.00 -63.15 314.07 3.43 -59.72
By element:
Atomic # 1 Polarization: 12.53 SS G_CDS: 0.27 Total: 12.81 kcal
Atomic # 6 Polarization: -43.05 SS G_CDS: 3.18 Total: -39.87 kcal
Atomic # 7 Polarization: -77.65 SS G_CDS: -2.06 Total: -79.70 kcal
Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.04 kcal
Total: -63.15 3.43 -59.72 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000252135425.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 2.647 kcal
(2) G-P(sol) polarization free energy of solvation -63.146 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.499 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.428 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.718 kcal
(6) G-S(sol) free energy of system = (1) + (5) -57.071 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds