Wall clock time and date at job start Mon Mar 30 2020 03:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 110.01380 * 2 1 4 4 C 1.54263 * 110.03437 * 238.61178 * 2 1 3 5 5 C 1.54895 * 104.19468 * 217.09918 * 4 2 1 6 6 C 1.54886 * 102.74621 * 37.94513 * 5 4 2 7 7 H 1.09007 * 110.48967 * 80.86450 * 6 5 4 8 8 N 1.46903 * 110.48871 * 203.37514 * 6 5 4 9 9 C 1.46893 * 111.00119 * 271.75845 * 8 6 5 10 10 C 1.53000 * 109.47186 * 179.97438 * 9 8 6 11 11 C 1.53001 * 109.47355 * 179.97438 * 10 9 8 12 12 C 1.50694 * 109.47168 * 180.02562 * 11 10 9 13 13 H 1.08000 * 120.00563 * 0.02562 * 12 11 10 14 14 C 1.37885 * 119.99902 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46985 * 179.97438 * 16 14 12 18 18 H 1.48494 * 109.47276 * 299.99832 * 16 14 12 19 19 H 1.48498 * 109.47150 * 60.00043 * 16 14 12 20 20 C 1.54086 * 109.93164 * 121.47453 * 2 1 3 21 21 H 1.09000 * 110.15843 * 0.12849 * 20 2 1 22 22 C 1.53003 * 110.00725 * 238.63009 * 20 2 1 23 23 H 1.09005 * 109.46545 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47444 * 299.93252 * 1 2 3 25 25 H 1.08997 * 109.47065 * 59.94080 * 1 2 3 26 26 H 1.09001 * 110.48878 * 98.42903 * 4 2 1 27 27 H 1.08994 * 110.60025 * 335.83416 * 4 2 1 28 28 H 1.08993 * 110.75805 * 279.62604 * 5 4 2 29 29 H 1.09002 * 110.90848 * 156.32805 * 5 4 2 30 30 H 1.00908 * 110.99499 * 35.70941 * 8 6 5 31 31 H 1.09002 * 109.47091 * 59.99841 * 9 8 6 32 32 H 1.08992 * 109.47497 * 299.99732 * 9 8 6 33 33 H 1.09002 * 109.46807 * 60.00192 * 10 9 8 34 34 H 1.08998 * 109.47285 * 299.99794 * 10 9 8 35 35 H 1.09007 * 109.46922 * 59.99890 * 11 10 9 36 36 H 1.09003 * 109.46836 * 300.00646 * 11 10 9 37 37 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 38 38 H 1.09003 * 109.46765 * 302.96993 * 22 20 2 39 39 H 1.09002 * 109.46984 * 62.97703 * 22 20 2 40 40 H 1.09001 * 109.46601 * 182.97322 * 22 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9030 1.0242 0.0000 4 6 2.0584 -0.7548 -1.2372 5 6 3.3138 -1.5002 -0.7198 6 6 2.8875 -1.9408 0.7026 7 1 2.2792 -2.8442 0.6560 8 7 4.0685 -2.1610 1.5482 9 6 4.5549 -3.5415 1.4241 10 6 5.7829 -3.7317 2.3167 11 6 6.2892 -5.1698 2.1879 12 6 7.4983 -5.3573 3.0675 13 1 7.8684 -4.5334 3.6596 14 6 8.1322 -6.5808 3.1165 15 7 7.6812 -7.5843 2.3959 16 14 9.6314 -6.8130 4.2064 17 1 10.1227 -8.2089 4.0814 18 1 10.7001 -5.8720 3.7852 19 1 9.2627 -6.5432 5.6193 20 6 2.0552 -0.7563 1.2354 21 1 1.2213 -1.1248 1.8329 22 6 2.9373 0.1669 2.0785 23 1 -0.3632 -1.0278 -0.0005 24 1 -0.3634 0.5128 0.8906 25 1 -0.3633 0.5147 -0.8894 26 1 2.3297 -0.0526 -2.0255 27 1 1.3153 -1.4651 -1.5994 28 1 4.1710 -0.8285 -0.6755 29 1 3.5357 -2.3670 -1.3424 30 1 4.7983 -1.4994 1.3294 31 1 4.8258 -3.7393 0.3870 32 1 3.7704 -4.2323 1.7328 33 1 5.5123 -3.5337 3.3538 34 1 6.5673 -3.0410 2.0076 35 1 6.5596 -5.3682 1.1507 36 1 5.5045 -5.8603 2.4972 37 1 8.1273 -8.4450 2.4300 38 1 3.7532 0.5493 1.4653 39 1 2.3405 0.9999 2.4500 40 1 3.3464 -0.3911 2.9207 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252135425.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:27 Heat of formation + Delta-G solvation = -57.071043 kcal Electronic energy + Delta-G solvation = -15618.637480 eV Core-core repulsion = 13237.738061 eV Total energy + Delta-G solvation = -2380.899420 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.27228 -37.01147 -35.19772 -33.12430 -31.88655 -30.70158 -28.01627 -26.04806 -24.67146 -24.03528 -21.99859 -21.37386 -19.81409 -18.50694 -16.93859 -16.66587 -16.44124 -15.98557 -15.12268 -14.72543 -14.53509 -14.31878 -13.95996 -13.80870 -13.61245 -13.36250 -13.10208 -12.85994 -12.69844 -12.52726 -12.41299 -12.31859 -11.66390 -11.61258 -11.54093 -11.46710 -11.36492 -11.27247 -11.22598 -10.95009 -10.55208 -9.21659 -8.20261 -6.31638 1.39819 1.43416 1.51327 2.41098 3.12598 3.23008 3.69262 3.73723 3.97517 4.20584 4.32346 4.42729 4.46580 4.47636 4.60473 4.68050 4.71389 4.73319 4.79859 4.90214 4.93908 5.01649 5.02690 5.12314 5.20377 5.23368 5.26744 5.34113 5.37568 5.41331 5.51775 5.56967 5.68997 5.75012 5.85430 6.15142 6.28540 6.54314 6.85171 7.37586 8.91573 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.062916 B = 0.004165 C = 0.004039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.930247 B = 6720.570757 C = 6930.315358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.090 4.090 3 H 0.077 0.923 4 C -0.112 4.112 5 C -0.153 4.153 6 C 0.082 3.918 7 H 0.068 0.932 8 N -0.679 5.679 9 C 0.073 3.927 10 C -0.091 4.091 11 C 0.025 3.975 12 C -0.545 4.545 13 H 0.060 0.940 14 C -0.002 4.002 15 N -0.934 5.934 16 Si 0.967 3.033 17 H -0.282 1.282 18 H -0.266 1.266 19 H -0.267 1.267 20 C -0.079 4.079 21 H 0.067 0.933 22 C -0.131 4.131 23 H 0.051 0.949 24 H 0.057 0.943 25 H 0.061 0.939 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.055 0.945 30 H 0.343 0.657 31 H 0.020 0.980 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.050 0.950 35 H -0.010 1.010 36 H -0.010 1.010 37 H 0.264 0.736 38 H 0.049 0.951 39 H 0.055 0.945 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.441 16.345 -5.653 21.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.109 4.109 3 H 0.096 0.904 4 C -0.150 4.150 5 C -0.192 4.192 6 C -0.028 4.028 7 H 0.086 0.914 8 N -0.309 5.309 9 C -0.056 4.056 10 C -0.129 4.129 11 C -0.012 4.012 12 C -0.583 4.583 13 H 0.078 0.922 14 C -0.200 4.200 15 N -0.575 5.575 16 Si 0.791 3.209 17 H -0.207 1.207 18 H -0.191 1.191 19 H -0.192 1.192 20 C -0.098 4.098 21 H 0.085 0.915 22 C -0.189 4.189 23 H 0.070 0.930 24 H 0.076 0.924 25 H 0.080 0.920 26 H 0.091 0.909 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.074 0.926 30 H 0.162 0.838 31 H 0.038 0.962 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.008 0.992 36 H 0.008 0.992 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.782 16.035 -5.110 21.133 hybrid contribution 1.213 -0.748 -0.486 1.505 sum -11.570 15.287 -5.596 19.971 Atomic orbital electron populations 1.21859 0.94347 1.01713 1.02016 1.21868 0.96141 0.99287 0.93608 0.90422 1.22332 0.96324 0.98948 0.97426 1.23163 0.98925 0.99929 0.97176 1.22517 0.91977 0.98150 0.90189 0.91390 1.60589 1.09359 1.03710 1.57194 1.21822 0.96540 0.90249 0.97009 1.21367 0.95632 0.96902 0.99046 1.18969 0.94679 0.92590 0.95004 1.21683 1.13327 0.96990 1.26289 0.92205 1.26018 1.00964 0.95691 0.97284 1.70098 1.42438 1.02723 1.42209 0.85475 0.78969 0.77252 0.79203 1.20748 1.19070 1.19157 1.21816 0.97247 0.94537 0.96241 0.91473 1.21638 0.99035 0.98307 0.99910 0.93021 0.92418 0.91951 0.90860 0.91397 0.91319 0.92649 0.83751 0.96195 0.92475 0.92953 0.93160 0.99187 0.99182 0.92751 0.93189 0.92626 0.92551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 8.84 71.98 0.64 -1.40 16 2 C -0.09 -1.50 3.16 -10.00 -0.03 -1.53 16 3 H 0.08 1.22 7.68 -2.38 -0.02 1.20 16 4 C -0.11 -1.93 6.36 31.67 0.20 -1.73 16 5 C -0.15 -3.27 6.45 31.89 0.21 -3.07 16 6 C 0.08 2.00 3.02 45.99 0.14 2.14 16 7 H 0.07 1.80 7.85 -2.38 -0.02 1.79 16 8 N -0.68 -19.58 4.82 -486.05 -2.34 -21.92 16 9 C 0.07 2.60 5.54 86.30 0.48 3.08 16 10 C -0.09 -3.91 5.41 30.59 0.17 -3.75 16 11 C 0.03 1.38 4.97 29.85 0.15 1.53 16 12 C -0.54 -31.95 9.11 25.60 0.23 -31.72 16 13 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 14 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 15 N -0.93 -58.07 13.29 21.45 0.28 -57.78 16 16 Si 0.97 45.02 29.54 68.60 2.03 47.04 16 17 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 18 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 19 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 20 C -0.08 -1.63 3.14 -10.00 -0.03 -1.66 16 21 H 0.07 1.43 7.68 -2.39 -0.02 1.41 16 22 C -0.13 -2.68 8.01 71.98 0.58 -2.10 16 23 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 24 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.07 1.14 7.86 -2.39 -0.02 1.12 16 28 H 0.07 1.45 7.81 -2.39 -0.02 1.43 16 29 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.34 9.32 7.70 -89.69 -0.69 8.63 16 31 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.06 2.12 8.08 -2.39 -0.02 2.10 16 33 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 35 H -0.01 -0.60 8.14 -2.38 -0.02 -0.62 16 36 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 37 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 38 H 0.05 0.98 7.99 -2.39 -0.02 0.96 16 39 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.06 1.36 7.38 -2.39 -0.02 1.34 16 Total: -1.00 -63.15 314.07 3.43 -59.72 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: 0.27 Total: 12.81 kcal Atomic # 6 Polarization: -43.05 SS G_CDS: 3.18 Total: -39.87 kcal Atomic # 7 Polarization: -77.65 SS G_CDS: -2.06 Total: -79.70 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.04 kcal Total: -63.15 3.43 -59.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252135425.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.647 kcal (2) G-P(sol) polarization free energy of solvation -63.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds