Wall clock time and date at job start Mon Mar 30 2020 02:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46930 * 2 1 4 4 H 1.09000 * 109.47288 * 304.99821 * 3 2 1 5 5 C 1.50702 * 109.47275 * 184.99849 * 3 2 1 6 6 H 1.08000 * 120.00335 * 240.00282 * 5 3 2 7 7 C 1.37879 * 119.99675 * 59.99584 * 5 3 2 8 8 N 1.31507 * 120.00159 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99810 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47381 * 59.99932 * 9 7 5 11 11 H 1.48502 * 109.47010 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46909 * 299.99965 * 9 7 5 13 13 N 1.46901 * 109.47329 * 64.99922 * 3 2 1 14 14 C 1.46843 * 111.00022 * 65.79046 * 13 3 2 15 15 C 1.53039 * 109.52391 * 185.84211 * 14 13 3 16 16 C 1.53124 * 109.27498 * 300.81655 * 15 14 13 17 17 H 1.08998 * 109.52745 * 297.74929 * 16 15 14 18 18 C 1.52998 * 109.52109 * 177.55681 * 16 15 14 19 19 C 1.53126 * 109.15878 * 57.65601 * 16 15 14 20 20 H 1.08994 * 109.50285 * 62.28827 * 19 16 15 21 21 C 1.53005 * 109.49931 * 182.36465 * 19 16 15 22 22 C 1.46854 * 111.00034 * 189.99924 * 13 3 2 23 23 H 1.09001 * 109.46988 * 60.00214 * 1 2 3 24 24 H 1.09001 * 109.47204 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47349 * 300.00571 * 1 2 3 26 26 H 1.09004 * 109.47046 * 239.99850 * 2 1 3 27 27 H 1.09001 * 109.46988 * 119.99786 * 2 1 3 28 28 H 0.97008 * 119.99966 * 180.02562 * 8 7 5 29 29 H 1.09001 * 109.45906 * 305.85080 * 14 13 3 30 30 H 1.08994 * 109.46526 * 65.83386 * 14 13 3 31 31 H 1.08997 * 109.50468 * 180.87980 * 15 14 13 32 32 H 1.09004 * 109.50358 * 60.75551 * 15 14 13 33 33 H 1.08997 * 109.47695 * 300.31643 * 18 16 15 34 34 H 1.09001 * 109.47253 * 60.31815 * 18 16 15 35 35 H 1.09004 * 109.47036 * 180.31510 * 18 16 15 36 36 H 1.08993 * 109.47363 * 59.99817 * 21 19 16 37 37 H 1.09003 * 109.46798 * 180.02562 * 21 19 16 38 38 H 1.08997 * 109.46890 * 299.99317 * 21 19 16 39 39 H 1.08999 * 109.45788 * 54.14266 * 22 13 3 40 40 H 1.09003 * 109.45264 * 294.17148 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1432 0.8784 -1.2279 8 7 3.4062 0.3374 -2.1732 9 14 6.0050 0.8801 -1.3811 10 1 6.5968 0.1454 -0.2341 11 1 6.3978 0.2167 -2.6503 12 1 6.5004 2.2800 -1.3808 13 7 1.6513 2.0993 1.2552 14 6 2.3291 1.4836 2.4031 15 6 1.7930 2.0927 3.7007 16 6 2.0394 3.6040 3.6891 17 1 3.1112 3.7981 3.6502 18 6 1.4512 4.2275 4.9565 19 6 1.3638 4.2139 2.4578 20 1 0.2873 4.0535 2.5165 21 6 1.6546 5.7152 2.4067 22 6 1.9123 3.5433 1.1964 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.8294 -0.0611 -2.9498 29 1 2.1424 0.4097 2.4019 30 1 3.4014 1.6659 2.3324 31 1 2.3074 1.6467 4.5518 32 1 0.7232 1.8990 3.7789 33 1 0.3800 4.0301 4.9952 34 1 1.9326 3.7928 5.8325 35 1 1.6221 5.3040 4.9447 36 1 2.7310 5.8750 2.3467 37 1 1.1730 6.1489 1.5303 38 1 1.2662 6.1913 3.3070 39 1 1.4229 3.9652 0.3186 40 1 2.9866 3.7156 1.1312 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000253066110.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:56 Heat of formation + Delta-G solvation = -25.107922 kcal Electronic energy + Delta-G solvation = -16905.294066 eV Core-core repulsion = 14525.780671 eV Total energy + Delta-G solvation = -2379.513395 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.84481 -35.55679 -32.39086 -31.61215 -31.05464 -27.97419 -26.43866 -25.15277 -22.96372 -21.59836 -21.33715 -19.11006 -18.83776 -16.25179 -15.20793 -14.43997 -14.28948 -14.10428 -13.91272 -13.34043 -12.88930 -12.68226 -12.50350 -11.91619 -11.79803 -11.55147 -11.51860 -11.22652 -11.15366 -11.02728 -10.82113 -10.56321 -10.36952 -10.19012 -10.02888 -9.85690 -9.60524 -9.49990 -9.14667 -8.99247 -8.32343 -7.02044 -5.94932 -4.08435 3.28998 3.34214 3.36794 4.41697 5.00387 5.14118 5.22200 5.28541 5.34106 5.61743 5.76063 5.87093 5.99257 6.02662 6.09169 6.14706 6.16966 6.27999 6.35617 6.38331 6.45387 6.51746 6.62743 6.63667 6.69707 6.72222 6.84736 6.88748 7.04327 7.17650 7.24410 7.42945 7.66389 7.81280 8.05607 8.22324 8.40804 8.55663 9.02563 9.58798 11.03717 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.026582 B = 0.009114 C = 0.007960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.082889 B = 3071.549129 C = 3516.721847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.111 4.111 3 C 0.214 3.786 4 H 0.036 0.964 5 C -0.541 4.541 6 H 0.055 0.945 7 C 0.068 3.932 8 N -0.886 5.886 9 Si 0.886 3.114 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.279 1.279 13 N -0.534 5.534 14 C 0.062 3.938 15 C -0.111 4.111 16 C -0.086 4.086 17 H 0.062 0.938 18 C -0.145 4.145 19 C -0.084 4.084 20 H 0.070 0.930 21 C -0.145 4.145 22 C 0.070 3.930 23 H 0.038 0.962 24 H 0.024 0.976 25 H 0.047 0.953 26 H 0.091 0.909 27 H 0.032 0.968 28 H 0.261 0.739 29 H 0.067 0.933 30 H 0.035 0.965 31 H 0.052 0.948 32 H 0.061 0.939 33 H 0.051 0.949 34 H 0.047 0.953 35 H 0.051 0.949 36 H 0.050 0.950 37 H 0.051 0.949 38 H 0.051 0.949 39 H 0.060 0.940 40 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.620 5.351 9.283 11.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.149 4.149 3 C 0.108 3.892 4 H 0.054 0.946 5 C -0.580 4.580 6 H 0.073 0.927 7 C -0.135 4.135 8 N -0.525 5.525 9 Si 0.714 3.286 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.258 5.258 14 C -0.067 4.067 15 C -0.149 4.149 16 C -0.105 4.105 17 H 0.080 0.920 18 C -0.202 4.202 19 C -0.103 4.103 20 H 0.088 0.912 21 C -0.203 4.203 22 C -0.058 4.058 23 H 0.057 0.943 24 H 0.043 0.957 25 H 0.067 0.933 26 H 0.109 0.891 27 H 0.051 0.949 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -4.116 5.181 9.148 11.290 hybrid contribution 2.038 0.056 -0.323 2.064 sum -2.077 5.237 8.825 10.470 Atomic orbital electron populations 1.21703 0.98909 0.98316 1.00553 1.21594 0.92217 0.99262 1.01819 1.19251 0.92925 0.91166 0.85877 0.94590 1.21729 0.92984 1.37952 1.05369 0.92667 1.24908 0.97690 0.95138 0.95719 1.69866 1.34789 1.38377 1.09431 0.86766 0.86395 0.78164 0.77310 1.20378 1.21251 1.20438 1.62358 1.57055 1.01663 1.04711 1.21887 0.96526 0.98610 0.89629 1.21692 1.01153 0.94479 0.97608 1.21175 0.99515 0.95561 0.94252 0.91971 1.21866 1.00709 1.00239 0.97379 1.21215 1.00278 0.93743 0.95057 0.91190 1.21838 1.01307 0.96204 1.00969 1.21863 0.98492 0.89786 0.95693 0.94318 0.95701 0.93343 0.89073 0.94938 0.92896 0.91428 0.94701 0.92920 0.92027 0.92979 0.93382 0.92956 0.93078 0.92982 0.92996 0.92163 0.94946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.80 37.16 0.36 -2.48 16 2 C -0.11 -2.64 5.16 -26.73 -0.14 -2.78 16 3 C 0.21 5.30 1.70 -68.87 -0.12 5.19 16 4 H 0.04 1.00 7.99 -51.93 -0.41 0.58 16 5 C -0.54 -14.53 7.23 -34.44 -0.25 -14.78 16 6 H 0.06 1.50 5.84 -52.49 -0.31 1.19 16 7 C 0.07 1.85 5.29 -17.82 -0.09 1.76 16 8 N -0.89 -25.04 11.29 55.43 0.63 -24.42 16 9 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 N -0.53 -11.33 4.06 -228.08 -0.93 -12.25 16 14 C 0.06 1.23 4.78 -3.83 -0.02 1.21 16 15 C -0.11 -1.78 5.38 -26.65 -0.14 -1.93 16 16 C -0.09 -1.28 2.29 -90.49 -0.21 -1.49 16 17 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 18 C -0.14 -1.75 8.91 37.16 0.33 -1.42 16 19 C -0.08 -1.32 2.38 -90.54 -0.22 -1.53 16 20 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 21 C -0.15 -1.94 8.91 37.16 0.33 -1.61 16 22 C 0.07 1.38 4.47 -3.83 -0.02 1.36 16 23 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.05 0.97 7.75 -51.93 -0.40 0.56 16 26 H 0.09 2.44 5.95 -51.93 -0.31 2.13 16 27 H 0.03 0.76 6.22 -51.93 -0.32 0.44 16 28 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 29 H 0.07 1.39 6.12 -51.93 -0.32 1.07 16 30 H 0.03 0.76 6.37 -51.93 -0.33 0.43 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.05 0.58 6.50 -51.93 -0.34 0.25 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.05 0.60 6.50 -51.93 -0.34 0.27 16 39 H 0.06 1.21 8.01 -51.93 -0.42 0.79 16 40 H 0.03 0.69 7.29 -51.93 -0.38 0.31 16 LS Contribution 296.80 15.07 4.47 4.47 Total: -1.00 -27.02 296.80 -8.26 -35.28 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -7.24 Total: -0.82 kcal Atomic # 6 Polarization: -18.35 SS G_CDS: -0.17 Total: -18.52 kcal Atomic # 7 Polarization: -36.37 SS G_CDS: -0.30 Total: -36.67 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -27.02 -8.26 -35.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253066110.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.169 kcal (2) G-P(sol) polarization free energy of solvation -27.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds