Wall clock time and date at job start Mon Mar 30 2020 02:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.46843 * 2 1 4 4 N 1.46903 * 109.47293 * 119.99742 * 2 1 3 5 5 C 1.46846 * 110.99546 * 210.70330 * 4 2 1 6 6 C 1.53040 * 109.51866 * 174.20096 * 5 4 2 7 7 H 1.09008 * 109.50469 * 299.15706 * 6 5 4 8 8 C 1.50697 * 109.50436 * 179.07919 * 6 5 4 9 9 H 1.08001 * 119.99929 * 335.27058 * 8 6 5 10 10 C 1.37879 * 120.00078 * 155.25888 * 8 6 5 11 11 N 1.31514 * 120.00136 * 355.26272 * 10 8 6 12 12 Si 1.86806 * 119.99623 * 175.25631 * 10 8 6 13 13 H 1.48495 * 109.47298 * 0.02562 * 12 10 8 14 14 H 1.48498 * 109.46530 * 120.00478 * 12 10 8 15 15 H 1.48501 * 109.47086 * 240.00158 * 12 10 8 16 16 C 1.53117 * 109.30991 * 59.11648 * 6 5 4 17 17 C 1.53117 * 109.16264 * 302.36419 * 16 6 5 18 18 C 1.46845 * 110.99631 * 86.45165 * 4 2 1 19 19 C 1.52999 * 109.46183 * 65.82452 * 18 4 2 20 20 C 1.53004 * 109.46531 * 305.85903 * 18 4 2 21 21 H 1.09004 * 109.46847 * 65.01737 * 1 2 3 22 22 H 1.09000 * 109.47237 * 185.01393 * 1 2 3 23 23 H 1.08996 * 109.47133 * 305.01422 * 1 2 3 24 24 H 1.09000 * 109.47193 * 240.00366 * 2 1 3 25 25 H 1.09003 * 109.46806 * 185.42633 * 3 2 1 26 26 H 1.08992 * 109.47122 * 305.42397 * 3 2 1 27 27 H 1.09000 * 109.47183 * 65.42876 * 3 2 1 28 28 H 1.08998 * 109.49876 * 54.16582 * 5 4 2 29 29 H 1.08997 * 109.43282 * 294.19040 * 5 4 2 30 30 H 0.96999 * 119.99850 * 5.27851 * 11 10 8 31 31 H 1.09004 * 109.52251 * 62.27356 * 16 6 5 32 32 H 1.09003 * 109.52072 * 182.39272 * 16 6 5 33 33 H 1.09000 * 109.50007 * 177.59300 * 17 16 6 34 34 H 1.08995 * 109.50485 * 297.71093 * 17 16 6 35 35 H 1.09005 * 109.47476 * 175.32110 * 19 18 4 36 36 H 1.08995 * 109.47366 * 295.32263 * 19 18 4 37 37 H 1.08999 * 109.46947 * 55.32690 * 19 18 4 38 38 H 1.09004 * 109.46473 * 307.61965 * 20 18 4 39 39 H 1.08995 * 109.47021 * 67.61852 * 20 18 4 40 40 H 1.08998 * 109.47211 * 187.62292 * 20 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 3.3065 -0.1377 1.6387 6 6 3.7142 -0.7810 2.9661 7 1 2.9614 -0.5616 3.7234 8 6 5.0455 -0.2282 3.4053 9 1 5.7313 0.1733 2.6738 10 6 5.3881 -0.2347 4.7408 11 7 4.5177 -0.6366 5.6410 12 14 7.0887 0.3274 5.2715 13 1 7.8733 0.7276 4.0759 14 1 6.9623 1.4865 6.1910 15 1 7.7822 -0.7849 5.9696 16 6 3.8261 -2.2969 2.7809 17 6 2.4867 -2.8419 2.2774 18 6 2.1151 -2.1396 0.9695 19 6 3.1904 -2.4188 -0.0825 20 6 0.7674 -2.6669 0.4728 21 1 -0.3633 0.4340 -0.9316 22 1 -0.3634 -1.0237 0.0898 23 1 -0.3633 0.5896 0.8416 24 1 1.8933 -0.5138 -0.8900 25 1 3.1256 1.4441 -0.0972 26 1 1.5995 1.9836 -0.8374 27 1 1.7582 1.9276 0.9346 28 1 3.2118 0.9400 1.7714 29 1 4.0668 -0.3455 0.8859 30 1 3.6632 -1.0003 5.3609 31 1 4.6064 -2.5182 2.0528 32 1 4.0749 -2.7629 3.7344 33 1 2.5729 -3.9144 2.1028 34 1 1.7142 -2.6549 3.0232 35 1 3.3197 -3.4955 -0.1931 36 1 2.8852 -1.9896 -1.0368 37 1 4.1324 -1.9703 0.2330 38 1 -0.0207 -2.3501 1.1560 39 1 0.5666 -2.2705 -0.5224 40 1 0.7962 -3.7557 0.4313 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259187550.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:15 Heat of formation + Delta-G solvation = -5.890963 kcal Electronic energy + Delta-G solvation = -17229.561049 eV Core-core repulsion = 14850.880964 eV Total energy + Delta-G solvation = -2378.680085 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.78547 -35.02447 -33.73878 -31.44354 -29.77450 -27.61865 -26.99126 -26.26291 -23.77426 -22.73587 -20.52058 -19.78799 -17.69478 -16.65406 -15.75018 -14.99080 -14.48643 -13.73982 -13.57335 -13.34008 -13.18476 -13.02918 -12.37320 -12.03336 -11.98498 -11.86734 -11.62499 -11.32710 -11.25978 -11.07145 -10.89684 -10.74996 -10.63721 -10.21816 -10.14420 -10.01582 -9.91430 -9.33121 -9.07125 -8.37200 -8.20434 -7.53737 -6.28133 -3.98496 3.46108 3.49519 3.62841 4.38043 4.59471 5.19867 5.22825 5.33968 5.39523 5.44838 5.54439 5.67655 5.81570 5.84131 5.88918 5.97254 6.03213 6.10514 6.12447 6.21857 6.25648 6.28329 6.31476 6.41316 6.48555 6.52917 6.56619 6.67896 6.78281 6.87795 7.04744 7.14223 7.56354 7.69283 7.86716 7.89655 8.38227 8.52387 8.97082 9.74171 11.11097 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.034649 B = 0.008605 C = 0.007741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.917250 B = 3253.329770 C = 3616.355607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.072 3.928 3 C -0.152 4.152 4 N -0.524 5.524 5 C 0.067 3.933 6 C 0.036 3.964 7 H 0.037 0.963 8 C -0.593 4.593 9 H 0.046 0.954 10 C 0.021 3.979 11 N -0.914 5.914 12 Si 1.069 2.931 13 H -0.291 1.291 14 H -0.288 1.288 15 H -0.288 1.288 16 C -0.109 4.109 17 C -0.105 4.105 18 C 0.112 3.888 19 C -0.181 4.181 20 C -0.142 4.142 21 H 0.044 0.956 22 H 0.072 0.928 23 H 0.056 0.944 24 H 0.041 0.959 25 H 0.056 0.944 26 H 0.049 0.951 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.021 0.979 30 H 0.272 0.728 31 H 0.043 0.957 32 H 0.050 0.950 33 H 0.047 0.953 34 H 0.060 0.940 35 H 0.053 0.947 36 H 0.047 0.953 37 H 0.069 0.931 38 H 0.065 0.935 39 H 0.055 0.945 40 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.990 -1.688 -11.094 12.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.037 4.037 3 C -0.210 4.210 4 N -0.249 5.249 5 C -0.060 4.060 6 C 0.017 3.983 7 H 0.055 0.945 8 C -0.632 4.632 9 H 0.064 0.936 10 C -0.183 4.183 11 N -0.551 5.551 12 Si 0.899 3.101 13 H -0.217 1.217 14 H -0.214 1.214 15 H -0.215 1.215 16 C -0.147 4.147 17 C -0.143 4.143 18 C 0.022 3.978 19 C -0.239 4.239 20 C -0.199 4.199 21 H 0.063 0.937 22 H 0.091 0.909 23 H 0.075 0.925 24 H 0.059 0.941 25 H 0.076 0.924 26 H 0.068 0.932 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.039 0.961 30 H 0.084 0.916 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.386 -1.308 -9.389 10.903 hybrid contribution -0.274 -0.452 -2.048 2.116 sum -5.660 -1.761 -11.438 12.883 Atomic orbital electron populations 1.22284 0.95296 1.03216 1.00606 1.21616 0.95440 0.94228 0.92385 1.22064 1.01102 0.96060 1.01736 1.62327 1.29931 1.01888 1.30742 1.22383 0.86700 0.99171 0.97743 1.18868 0.96892 0.90397 0.92133 0.94464 1.21955 1.02106 1.44067 0.95056 0.93609 1.25735 1.04119 0.95438 0.93029 1.70705 1.08534 1.39624 1.36190 0.83546 0.74839 0.76539 0.75214 1.21668 1.21423 1.21477 1.21806 0.93724 0.99832 0.99379 1.21681 0.99742 0.97262 0.95650 1.20939 0.93538 0.88597 0.94693 1.22507 1.01137 1.01433 0.98863 1.22189 0.97313 0.99840 1.00586 0.93701 0.90895 0.92492 0.94085 0.92448 0.93151 0.91679 0.91276 0.96098 0.91608 0.93835 0.93142 0.93412 0.92081 0.92801 0.93446 0.91235 0.91634 0.92641 0.93084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 8.90 37.16 0.33 -1.77 16 2 C 0.07 1.11 2.32 -67.71 -0.16 0.95 16 3 C -0.15 -2.27 7.83 37.16 0.29 -1.98 16 4 N -0.52 -9.59 4.35 -211.13 -0.92 -10.51 16 5 C 0.07 1.42 3.30 -3.83 -0.01 1.41 16 6 C 0.04 0.90 1.99 -91.69 -0.18 0.72 16 7 H 0.04 1.04 6.68 -51.92 -0.35 0.69 16 8 C -0.59 -16.53 8.32 -34.44 -0.29 -16.81 16 9 H 0.05 1.28 7.81 -52.49 -0.41 0.87 16 10 C 0.02 0.60 5.46 -17.82 -0.10 0.51 16 11 N -0.91 -27.63 13.63 55.43 0.76 -26.88 16 12 Si 1.07 25.44 29.91 -169.99 -5.08 20.36 16 13 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 14 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 15 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 16 C -0.11 -2.48 4.96 -26.61 -0.13 -2.61 16 17 C -0.11 -1.99 4.89 -26.65 -0.13 -2.12 16 18 C 0.11 1.90 0.67 -131.61 -0.09 1.81 16 19 C -0.18 -2.92 7.42 37.16 0.28 -2.64 16 20 C -0.14 -1.99 6.75 37.16 0.25 -1.74 16 21 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 22 H 0.07 0.94 3.95 -51.93 -0.20 0.74 16 23 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 24 H 0.04 0.62 5.62 -51.93 -0.29 0.33 16 25 H 0.06 0.90 6.89 -51.93 -0.36 0.54 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 1.04 7.55 -51.93 -0.39 0.65 16 28 H 0.07 1.51 5.83 -51.93 -0.30 1.21 16 29 H 0.02 0.45 6.04 -51.93 -0.31 0.14 16 30 H 0.27 8.23 6.66 -40.82 -0.27 7.96 16 31 H 0.04 0.98 6.67 -51.93 -0.35 0.63 16 32 H 0.05 1.25 8.14 -51.93 -0.42 0.82 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.05 0.70 6.39 -51.93 -0.33 0.37 16 37 H 0.07 1.27 4.80 -51.93 -0.25 1.02 16 38 H 0.06 0.93 7.13 -51.93 -0.37 0.56 16 39 H 0.05 0.71 6.01 -51.93 -0.31 0.40 16 40 H 0.05 0.65 8.13 -51.93 -0.42 0.23 16 LS Contribution 285.15 15.07 4.30 4.30 Total: -1.00 -28.93 285.15 -7.56 -36.50 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -6.68 Total: 0.51 kcal Atomic # 6 Polarization: -24.34 SS G_CDS: 0.06 Total: -24.28 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: -0.16 Total: -37.39 kcal Atomic # 14 Polarization: 25.44 SS G_CDS: -5.08 Total: 20.36 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -28.93 -7.56 -36.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259187550.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.608 kcal (2) G-P(sol) polarization free energy of solvation -28.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds