Wall clock time and date at job start Mon Mar 30 2020 02:59:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.53008 * 109.46843 * 2 1
4 4 N 1.46903 * 109.47293 * 119.99742 * 2 1 3
5 5 C 1.46846 * 110.99546 * 210.70330 * 4 2 1
6 6 C 1.53040 * 109.51866 * 174.20096 * 5 4 2
7 7 H 1.09008 * 109.50469 * 299.15706 * 6 5 4
8 8 C 1.50697 * 109.50436 * 179.07919 * 6 5 4
9 9 H 1.08001 * 119.99929 * 335.27058 * 8 6 5
10 10 C 1.37879 * 120.00078 * 155.25888 * 8 6 5
11 11 N 1.31514 * 120.00136 * 355.26272 * 10 8 6
12 12 Si 1.86806 * 119.99623 * 175.25631 * 10 8 6
13 13 H 1.48495 * 109.47298 * 0.02562 * 12 10 8
14 14 H 1.48498 * 109.46530 * 120.00478 * 12 10 8
15 15 H 1.48501 * 109.47086 * 240.00158 * 12 10 8
16 16 C 1.53117 * 109.30991 * 59.11648 * 6 5 4
17 17 C 1.53117 * 109.16264 * 302.36419 * 16 6 5
18 18 C 1.46845 * 110.99631 * 86.45165 * 4 2 1
19 19 C 1.52999 * 109.46183 * 65.82452 * 18 4 2
20 20 C 1.53004 * 109.46531 * 305.85903 * 18 4 2
21 21 H 1.09004 * 109.46847 * 65.01737 * 1 2 3
22 22 H 1.09000 * 109.47237 * 185.01393 * 1 2 3
23 23 H 1.08996 * 109.47133 * 305.01422 * 1 2 3
24 24 H 1.09000 * 109.47193 * 240.00366 * 2 1 3
25 25 H 1.09003 * 109.46806 * 185.42633 * 3 2 1
26 26 H 1.08992 * 109.47122 * 305.42397 * 3 2 1
27 27 H 1.09000 * 109.47183 * 65.42876 * 3 2 1
28 28 H 1.08998 * 109.49876 * 54.16582 * 5 4 2
29 29 H 1.08997 * 109.43282 * 294.19040 * 5 4 2
30 30 H 0.96999 * 119.99850 * 5.27851 * 11 10 8
31 31 H 1.09004 * 109.52251 * 62.27356 * 16 6 5
32 32 H 1.09003 * 109.52072 * 182.39272 * 16 6 5
33 33 H 1.09000 * 109.50007 * 177.59300 * 17 16 6
34 34 H 1.08995 * 109.50485 * 297.71093 * 17 16 6
35 35 H 1.09005 * 109.47476 * 175.32110 * 19 18 4
36 36 H 1.08995 * 109.47366 * 295.32263 * 19 18 4
37 37 H 1.08999 * 109.46947 * 55.32690 * 19 18 4
38 38 H 1.09004 * 109.46473 * 307.61965 * 20 18 4
39 39 H 1.08995 * 109.47021 * 67.61852 * 20 18 4
40 40 H 1.08998 * 109.47211 * 187.62292 * 20 18 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 7 2.0197 -0.6924 1.1995
5 6 3.3065 -0.1377 1.6387
6 6 3.7142 -0.7810 2.9661
7 1 2.9614 -0.5616 3.7234
8 6 5.0455 -0.2282 3.4053
9 1 5.7313 0.1733 2.6738
10 6 5.3881 -0.2347 4.7408
11 7 4.5177 -0.6366 5.6410
12 14 7.0887 0.3274 5.2715
13 1 7.8733 0.7276 4.0759
14 1 6.9623 1.4865 6.1910
15 1 7.7822 -0.7849 5.9696
16 6 3.8261 -2.2969 2.7809
17 6 2.4867 -2.8419 2.2774
18 6 2.1151 -2.1396 0.9695
19 6 3.1904 -2.4188 -0.0825
20 6 0.7674 -2.6669 0.4728
21 1 -0.3633 0.4340 -0.9316
22 1 -0.3634 -1.0237 0.0898
23 1 -0.3633 0.5896 0.8416
24 1 1.8933 -0.5138 -0.8900
25 1 3.1256 1.4441 -0.0972
26 1 1.5995 1.9836 -0.8374
27 1 1.7582 1.9276 0.9346
28 1 3.2118 0.9400 1.7714
29 1 4.0668 -0.3455 0.8859
30 1 3.6632 -1.0003 5.3609
31 1 4.6064 -2.5182 2.0528
32 1 4.0749 -2.7629 3.7344
33 1 2.5729 -3.9144 2.1028
34 1 1.7142 -2.6549 3.0232
35 1 3.3197 -3.4955 -0.1931
36 1 2.8852 -1.9896 -1.0368
37 1 4.1324 -1.9703 0.2330
38 1 -0.0207 -2.3501 1.1560
39 1 0.5666 -2.2705 -0.5224
40 1 0.7962 -3.7557 0.4313
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000259187550.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:59:15
Heat of formation + Delta-G solvation = -5.890963 kcal
Electronic energy + Delta-G solvation = -17229.561049 eV
Core-core repulsion = 14850.880964 eV
Total energy + Delta-G solvation = -2378.680085 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 225.179 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-39.78547 -35.02447 -33.73878 -31.44354 -29.77450 -27.61865 -26.99126 -26.26291
-23.77426 -22.73587 -20.52058 -19.78799 -17.69478 -16.65406 -15.75018 -14.99080
-14.48643 -13.73982 -13.57335 -13.34008 -13.18476 -13.02918 -12.37320 -12.03336
-11.98498 -11.86734 -11.62499 -11.32710 -11.25978 -11.07145 -10.89684 -10.74996
-10.63721 -10.21816 -10.14420 -10.01582 -9.91430 -9.33121 -9.07125 -8.37200
-8.20434 -7.53737 -6.28133 -3.98496 3.46108 3.49519 3.62841 4.38043
4.59471 5.19867 5.22825 5.33968 5.39523 5.44838 5.54439 5.67655
5.81570 5.84131 5.88918 5.97254 6.03213 6.10514 6.12447 6.21857
6.25648 6.28329 6.31476 6.41316 6.48555 6.52917 6.56619 6.67896
6.78281 6.87795 7.04744 7.14223 7.56354 7.69283 7.86716 7.89655
8.38227 8.52387 8.97082 9.74171 11.11097
Molecular weight = 225.18amu
Principal moments of inertia in cm(-1)
A = 0.034649 B = 0.008605 C = 0.007741
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 807.917250 B = 3253.329770 C = 3616.355607
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.157 4.157
2 C 0.072 3.928
3 C -0.152 4.152
4 N -0.524 5.524
5 C 0.067 3.933
6 C 0.036 3.964
7 H 0.037 0.963
8 C -0.593 4.593
9 H 0.046 0.954
10 C 0.021 3.979
11 N -0.914 5.914
12 Si 1.069 2.931
13 H -0.291 1.291
14 H -0.288 1.288
15 H -0.288 1.288
16 C -0.109 4.109
17 C -0.105 4.105
18 C 0.112 3.888
19 C -0.181 4.181
20 C -0.142 4.142
21 H 0.044 0.956
22 H 0.072 0.928
23 H 0.056 0.944
24 H 0.041 0.959
25 H 0.056 0.944
26 H 0.049 0.951
27 H 0.064 0.936
28 H 0.069 0.931
29 H 0.021 0.979
30 H 0.272 0.728
31 H 0.043 0.957
32 H 0.050 0.950
33 H 0.047 0.953
34 H 0.060 0.940
35 H 0.053 0.947
36 H 0.047 0.953
37 H 0.069 0.931
38 H 0.065 0.935
39 H 0.055 0.945
40 H 0.050 0.950
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.990 -1.688 -11.094 12.721
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.214 4.214
2 C -0.037 4.037
3 C -0.210 4.210
4 N -0.249 5.249
5 C -0.060 4.060
6 C 0.017 3.983
7 H 0.055 0.945
8 C -0.632 4.632
9 H 0.064 0.936
10 C -0.183 4.183
11 N -0.551 5.551
12 Si 0.899 3.101
13 H -0.217 1.217
14 H -0.214 1.214
15 H -0.215 1.215
16 C -0.147 4.147
17 C -0.143 4.143
18 C 0.022 3.978
19 C -0.239 4.239
20 C -0.199 4.199
21 H 0.063 0.937
22 H 0.091 0.909
23 H 0.075 0.925
24 H 0.059 0.941
25 H 0.076 0.924
26 H 0.068 0.932
27 H 0.083 0.917
28 H 0.087 0.913
29 H 0.039 0.961
30 H 0.084 0.916
31 H 0.062 0.938
32 H 0.069 0.931
33 H 0.066 0.934
34 H 0.079 0.921
35 H 0.072 0.928
36 H 0.066 0.934
37 H 0.088 0.912
38 H 0.084 0.916
39 H 0.074 0.926
40 H 0.069 0.931
Dipole moment (debyes) X Y Z Total
from point charges -5.386 -1.308 -9.389 10.903
hybrid contribution -0.274 -0.452 -2.048 2.116
sum -5.660 -1.761 -11.438 12.883
Atomic orbital electron populations
1.22284 0.95296 1.03216 1.00606 1.21616 0.95440 0.94228 0.92385
1.22064 1.01102 0.96060 1.01736 1.62327 1.29931 1.01888 1.30742
1.22383 0.86700 0.99171 0.97743 1.18868 0.96892 0.90397 0.92133
0.94464 1.21955 1.02106 1.44067 0.95056 0.93609 1.25735 1.04119
0.95438 0.93029 1.70705 1.08534 1.39624 1.36190 0.83546 0.74839
0.76539 0.75214 1.21668 1.21423 1.21477 1.21806 0.93724 0.99832
0.99379 1.21681 0.99742 0.97262 0.95650 1.20939 0.93538 0.88597
0.94693 1.22507 1.01137 1.01433 0.98863 1.22189 0.97313 0.99840
1.00586 0.93701 0.90895 0.92492 0.94085 0.92448 0.93151 0.91679
0.91276 0.96098 0.91608 0.93835 0.93142 0.93412 0.92081 0.92801
0.93446 0.91235 0.91634 0.92641 0.93084
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.10 8.90 37.16 0.33 -1.77 16
2 C 0.07 1.11 2.32 -67.71 -0.16 0.95 16
3 C -0.15 -2.27 7.83 37.16 0.29 -1.98 16
4 N -0.52 -9.59 4.35 -211.13 -0.92 -10.51 16
5 C 0.07 1.42 3.30 -3.83 -0.01 1.41 16
6 C 0.04 0.90 1.99 -91.69 -0.18 0.72 16
7 H 0.04 1.04 6.68 -51.92 -0.35 0.69 16
8 C -0.59 -16.53 8.32 -34.44 -0.29 -16.81 16
9 H 0.05 1.28 7.81 -52.49 -0.41 0.87 16
10 C 0.02 0.60 5.46 -17.82 -0.10 0.51 16
11 N -0.91 -27.63 13.63 55.43 0.76 -26.88 16
12 Si 1.07 25.44 29.91 -169.99 -5.08 20.36 16
13 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16
14 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16
15 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16
16 C -0.11 -2.48 4.96 -26.61 -0.13 -2.61 16
17 C -0.11 -1.99 4.89 -26.65 -0.13 -2.12 16
18 C 0.11 1.90 0.67 -131.61 -0.09 1.81 16
19 C -0.18 -2.92 7.42 37.16 0.28 -2.64 16
20 C -0.14 -1.99 6.75 37.16 0.25 -1.74 16
21 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16
22 H 0.07 0.94 3.95 -51.93 -0.20 0.74 16
23 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16
24 H 0.04 0.62 5.62 -51.93 -0.29 0.33 16
25 H 0.06 0.90 6.89 -51.93 -0.36 0.54 16
26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16
27 H 0.06 1.04 7.55 -51.93 -0.39 0.65 16
28 H 0.07 1.51 5.83 -51.93 -0.30 1.21 16
29 H 0.02 0.45 6.04 -51.93 -0.31 0.14 16
30 H 0.27 8.23 6.66 -40.82 -0.27 7.96 16
31 H 0.04 0.98 6.67 -51.93 -0.35 0.63 16
32 H 0.05 1.25 8.14 -51.93 -0.42 0.82 16
33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16
34 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16
35 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16
36 H 0.05 0.70 6.39 -51.93 -0.33 0.37 16
37 H 0.07 1.27 4.80 -51.93 -0.25 1.02 16
38 H 0.06 0.93 7.13 -51.93 -0.37 0.56 16
39 H 0.05 0.71 6.01 -51.93 -0.31 0.40 16
40 H 0.05 0.65 8.13 -51.93 -0.42 0.23 16
LS Contribution 285.15 15.07 4.30 4.30
Total: -1.00 -28.93 285.15 -7.56 -36.50
By element:
Atomic # 1 Polarization: 7.19 SS G_CDS: -6.68 Total: 0.51 kcal
Atomic # 6 Polarization: -24.34 SS G_CDS: 0.06 Total: -24.28 kcal
Atomic # 7 Polarization: -37.23 SS G_CDS: -0.16 Total: -37.39 kcal
Atomic # 14 Polarization: 25.44 SS G_CDS: -5.08 Total: 20.36 kcal
Total LS contribution 4.30 Total: 4.30 kcal
Total: -28.93 -7.56 -36.50 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259187550.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 30.608 kcal
(2) G-P(sol) polarization free energy of solvation -28.934 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.674 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.565 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.499 kcal
(6) G-S(sol) free energy of system = (1) + (5) -5.891 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds