Wall clock time and date at job start Mon Mar 30 2020 02:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.46843 * 2 1 4 4 N 1.46903 * 109.47293 * 119.99742 * 2 1 3 5 5 C 1.46846 * 110.99546 * 210.70330 * 4 2 1 6 6 C 1.53040 * 109.51866 * 174.20096 * 5 4 2 7 7 H 1.09008 * 109.50469 * 299.15706 * 6 5 4 8 8 C 1.50697 * 109.50436 * 179.07919 * 6 5 4 9 9 H 1.08001 * 119.99929 * 335.27058 * 8 6 5 10 10 C 1.37879 * 120.00078 * 155.25888 * 8 6 5 11 11 N 1.31514 * 120.00136 * 355.26272 * 10 8 6 12 12 Si 1.86806 * 119.99623 * 175.25631 * 10 8 6 13 13 H 1.48495 * 109.47298 * 0.02562 * 12 10 8 14 14 H 1.48498 * 109.46530 * 120.00478 * 12 10 8 15 15 H 1.48501 * 109.47086 * 240.00158 * 12 10 8 16 16 C 1.53117 * 109.30991 * 59.11648 * 6 5 4 17 17 C 1.53117 * 109.16264 * 302.36419 * 16 6 5 18 18 C 1.46845 * 110.99631 * 86.45165 * 4 2 1 19 19 C 1.52999 * 109.46183 * 65.82452 * 18 4 2 20 20 C 1.53004 * 109.46531 * 305.85903 * 18 4 2 21 21 H 1.09004 * 109.46847 * 65.01737 * 1 2 3 22 22 H 1.09000 * 109.47237 * 185.01393 * 1 2 3 23 23 H 1.08996 * 109.47133 * 305.01422 * 1 2 3 24 24 H 1.09000 * 109.47193 * 240.00366 * 2 1 3 25 25 H 1.09003 * 109.46806 * 185.42633 * 3 2 1 26 26 H 1.08992 * 109.47122 * 305.42397 * 3 2 1 27 27 H 1.09000 * 109.47183 * 65.42876 * 3 2 1 28 28 H 1.08998 * 109.49876 * 54.16582 * 5 4 2 29 29 H 1.08997 * 109.43282 * 294.19040 * 5 4 2 30 30 H 0.96999 * 119.99850 * 5.27851 * 11 10 8 31 31 H 1.09004 * 109.52251 * 62.27356 * 16 6 5 32 32 H 1.09003 * 109.52072 * 182.39272 * 16 6 5 33 33 H 1.09000 * 109.50007 * 177.59300 * 17 16 6 34 34 H 1.08995 * 109.50485 * 297.71093 * 17 16 6 35 35 H 1.09005 * 109.47476 * 175.32110 * 19 18 4 36 36 H 1.08995 * 109.47366 * 295.32263 * 19 18 4 37 37 H 1.08999 * 109.46947 * 55.32690 * 19 18 4 38 38 H 1.09004 * 109.46473 * 307.61965 * 20 18 4 39 39 H 1.08995 * 109.47021 * 67.61852 * 20 18 4 40 40 H 1.08998 * 109.47211 * 187.62292 * 20 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 3.3065 -0.1377 1.6387 6 6 3.7142 -0.7810 2.9661 7 1 2.9614 -0.5616 3.7234 8 6 5.0455 -0.2282 3.4053 9 1 5.7313 0.1733 2.6738 10 6 5.3881 -0.2347 4.7408 11 7 4.5177 -0.6366 5.6410 12 14 7.0887 0.3274 5.2715 13 1 7.8733 0.7276 4.0759 14 1 6.9623 1.4865 6.1910 15 1 7.7822 -0.7849 5.9696 16 6 3.8261 -2.2969 2.7809 17 6 2.4867 -2.8419 2.2774 18 6 2.1151 -2.1396 0.9695 19 6 3.1904 -2.4188 -0.0825 20 6 0.7674 -2.6669 0.4728 21 1 -0.3633 0.4340 -0.9316 22 1 -0.3634 -1.0237 0.0898 23 1 -0.3633 0.5896 0.8416 24 1 1.8933 -0.5138 -0.8900 25 1 3.1256 1.4441 -0.0972 26 1 1.5995 1.9836 -0.8374 27 1 1.7582 1.9276 0.9346 28 1 3.2118 0.9400 1.7714 29 1 4.0668 -0.3455 0.8859 30 1 3.6632 -1.0003 5.3609 31 1 4.6064 -2.5182 2.0528 32 1 4.0749 -2.7629 3.7344 33 1 2.5729 -3.9144 2.1028 34 1 1.7142 -2.6549 3.0232 35 1 3.3197 -3.4955 -0.1931 36 1 2.8852 -1.9896 -1.0368 37 1 4.1324 -1.9703 0.2330 38 1 -0.0207 -2.3501 1.1560 39 1 0.5666 -2.2705 -0.5224 40 1 0.7962 -3.7557 0.4313 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259187550.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:15 Heat of formation + Delta-G solvation = -23.301666 kcal Electronic energy + Delta-G solvation = -17230.316034 eV Core-core repulsion = 14850.880964 eV Total energy + Delta-G solvation = -2379.435070 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.25512 -36.71746 -35.33606 -33.27274 -31.27895 -28.97842 -28.58336 -27.45257 -25.75128 -24.35918 -22.17219 -21.26423 -19.23456 -18.72015 -17.11209 -16.42049 -16.09305 -15.67574 -15.02322 -14.82764 -14.73471 -14.37053 -14.07913 -13.54313 -13.33919 -13.15707 -13.12128 -12.83478 -12.65959 -12.60890 -12.47607 -12.28890 -11.95679 -11.92829 -11.64932 -11.54803 -11.44872 -11.17718 -10.78479 -10.45610 -10.32297 -8.98808 -8.57976 -6.28315 1.50913 1.60123 1.75972 2.56546 3.02463 3.23210 3.86678 3.93702 4.07461 4.14764 4.23862 4.32473 4.46924 4.50388 4.60807 4.67970 4.69850 4.75644 4.81353 4.91035 4.92497 4.95520 4.96366 5.03446 5.05510 5.10927 5.18049 5.22518 5.27515 5.34325 5.49652 5.54738 5.60651 5.82472 6.06278 6.25726 6.42343 6.48639 6.72011 7.52417 8.80981 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.034649 B = 0.008605 C = 0.007741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.917250 B = 3253.329770 C = 3616.355607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.069 3.931 3 C -0.150 4.150 4 N -0.536 5.536 5 C 0.085 3.915 6 C 0.032 3.968 7 H -0.001 1.001 8 C -0.604 4.604 9 H 0.040 0.960 10 C -0.031 4.031 11 N -0.939 5.939 12 Si 1.115 2.885 13 H -0.273 1.273 14 H -0.280 1.280 15 H -0.280 1.280 16 C -0.099 4.099 17 C -0.100 4.100 18 C 0.108 3.892 19 C -0.175 4.175 20 C -0.134 4.134 21 H 0.070 0.930 22 H 0.080 0.920 23 H 0.043 0.957 24 H 0.054 0.946 25 H 0.043 0.957 26 H 0.079 0.921 27 H 0.046 0.954 28 H 0.056 0.944 29 H 0.018 0.982 30 H 0.258 0.742 31 H 0.043 0.957 32 H 0.017 0.983 33 H 0.072 0.928 34 H 0.047 0.953 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.041 0.959 38 H 0.062 0.938 39 H 0.074 0.926 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.567 -2.122 -13.345 15.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.039 4.039 3 C -0.207 4.207 4 N -0.261 5.261 5 C -0.043 4.043 6 C 0.013 3.987 7 H 0.017 0.983 8 C -0.642 4.642 9 H 0.058 0.942 10 C -0.229 4.229 11 N -0.577 5.577 12 Si 0.938 3.062 13 H -0.198 1.198 14 H -0.206 1.206 15 H -0.206 1.206 16 C -0.137 4.137 17 C -0.138 4.138 18 C 0.018 3.982 19 C -0.234 4.234 20 C -0.192 4.192 21 H 0.089 0.911 22 H 0.099 0.901 23 H 0.062 0.938 24 H 0.071 0.929 25 H 0.062 0.938 26 H 0.098 0.902 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.036 0.964 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.036 0.964 33 H 0.091 0.909 34 H 0.066 0.934 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.060 0.940 38 H 0.080 0.920 39 H 0.093 0.907 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.982 -1.745 -11.666 13.226 hybrid contribution -0.124 -0.311 -1.382 1.422 sum -6.106 -2.057 -13.048 14.552 Atomic orbital electron populations 1.22247 0.93334 1.03796 1.01471 1.21775 0.96863 0.93985 0.91266 1.22034 1.00407 0.96263 1.02034 1.62276 1.27727 1.03093 1.33008 1.21975 0.88483 0.98133 0.95703 1.18824 0.94572 0.92256 0.93032 0.98294 1.22329 1.03236 1.43506 0.95153 0.94153 1.27168 1.06996 0.95157 0.93587 1.70831 1.08629 1.41613 1.36650 0.82962 0.70951 0.76593 0.75720 1.19786 1.20625 1.20632 1.21584 0.96262 0.98030 0.97835 1.21634 0.96664 0.98893 0.96607 1.21052 0.95923 0.87491 0.93719 1.22434 0.99283 1.02511 0.99124 1.22124 0.94779 1.00997 1.01251 0.91088 0.90107 0.93782 0.92863 0.93824 0.90229 0.93450 0.92556 0.96395 0.93143 0.93828 0.96422 0.90907 0.93436 0.91073 0.91610 0.94033 0.91958 0.90742 0.91228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.58 8.90 71.98 0.64 -2.94 16 2 C 0.07 1.96 2.32 44.92 0.10 2.06 16 3 C -0.15 -4.27 7.83 71.98 0.56 -3.71 16 4 N -0.54 -19.17 4.35 -821.89 -3.58 -22.75 16 5 C 0.08 3.68 3.30 86.33 0.28 3.97 16 6 C 0.03 1.68 1.99 -11.49 -0.02 1.65 16 7 H 0.00 -0.07 6.68 -2.38 -0.02 -0.09 16 8 C -0.60 -34.75 8.32 25.60 0.21 -34.54 16 9 H 0.04 2.31 7.81 -2.91 -0.02 2.29 16 10 C -0.03 -1.83 5.46 84.66 0.46 -1.37 16 11 N -0.94 -58.95 13.63 21.45 0.29 -58.66 16 12 Si 1.12 51.73 29.91 68.60 2.05 53.78 16 13 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 14 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 15 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 16 C -0.10 -4.61 4.96 30.67 0.15 -4.46 16 17 C -0.10 -3.73 4.89 30.64 0.15 -3.58 16 18 C 0.11 3.43 0.67 3.55 0.00 3.43 16 19 C -0.18 -5.19 7.42 71.98 0.53 -4.65 16 20 C -0.13 -3.27 6.75 71.98 0.49 -2.78 16 21 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 22 H 0.08 1.79 3.95 -2.39 -0.01 1.78 16 23 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 24 H 0.05 1.42 5.62 -2.39 -0.01 1.40 16 25 H 0.04 1.34 6.89 -2.39 -0.02 1.32 16 26 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.05 1.50 7.55 -2.39 -0.02 1.48 16 28 H 0.06 2.55 5.83 -2.39 -0.01 2.54 16 29 H 0.02 0.79 6.04 -2.39 -0.01 0.77 16 30 H 0.26 16.51 6.66 -92.71 -0.62 15.89 16 31 H 0.04 1.99 6.67 -2.38 -0.02 1.98 16 32 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.07 2.33 8.14 -2.39 -0.02 2.32 16 34 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 36 H 0.07 1.70 6.39 -2.39 -0.02 1.69 16 37 H 0.04 1.46 4.80 -2.39 -0.01 1.45 16 38 H 0.06 1.58 7.13 -2.38 -0.02 1.56 16 39 H 0.07 1.55 6.01 -2.39 -0.01 1.54 16 40 H 0.07 1.46 8.13 -2.39 -0.02 1.44 16 Total: -1.00 -64.72 285.15 3.49 -61.23 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: 1.15 Total: 13.30 kcal Atomic # 6 Polarization: -50.48 SS G_CDS: 3.57 Total: -46.91 kcal Atomic # 7 Polarization: -78.12 SS G_CDS: -3.28 Total: -81.41 kcal Atomic # 14 Polarization: 51.73 SS G_CDS: 2.05 Total: 53.78 kcal Total: -64.72 3.49 -61.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259187550.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.928 kcal (2) G-P(sol) polarization free energy of solvation -64.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds