Wall clock time and date at job start Mon Mar 30 2020 02:59:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.53008 * 109.46843 * 2 1
4 4 N 1.46903 * 109.47293 * 119.99742 * 2 1 3
5 5 C 1.46846 * 110.99546 * 210.70330 * 4 2 1
6 6 C 1.53040 * 109.51866 * 174.20096 * 5 4 2
7 7 H 1.09008 * 109.50469 * 299.15706 * 6 5 4
8 8 C 1.50697 * 109.50436 * 179.07919 * 6 5 4
9 9 H 1.08001 * 119.99929 * 335.27058 * 8 6 5
10 10 C 1.37879 * 120.00078 * 155.25888 * 8 6 5
11 11 N 1.31514 * 120.00136 * 355.26272 * 10 8 6
12 12 Si 1.86806 * 119.99623 * 175.25631 * 10 8 6
13 13 H 1.48495 * 109.47298 * 0.02562 * 12 10 8
14 14 H 1.48498 * 109.46530 * 120.00478 * 12 10 8
15 15 H 1.48501 * 109.47086 * 240.00158 * 12 10 8
16 16 C 1.53117 * 109.30991 * 59.11648 * 6 5 4
17 17 C 1.53117 * 109.16264 * 302.36419 * 16 6 5
18 18 C 1.46845 * 110.99631 * 86.45165 * 4 2 1
19 19 C 1.52999 * 109.46183 * 65.82452 * 18 4 2
20 20 C 1.53004 * 109.46531 * 305.85903 * 18 4 2
21 21 H 1.09004 * 109.46847 * 65.01737 * 1 2 3
22 22 H 1.09000 * 109.47237 * 185.01393 * 1 2 3
23 23 H 1.08996 * 109.47133 * 305.01422 * 1 2 3
24 24 H 1.09000 * 109.47193 * 240.00366 * 2 1 3
25 25 H 1.09003 * 109.46806 * 185.42633 * 3 2 1
26 26 H 1.08992 * 109.47122 * 305.42397 * 3 2 1
27 27 H 1.09000 * 109.47183 * 65.42876 * 3 2 1
28 28 H 1.08998 * 109.49876 * 54.16582 * 5 4 2
29 29 H 1.08997 * 109.43282 * 294.19040 * 5 4 2
30 30 H 0.96999 * 119.99850 * 5.27851 * 11 10 8
31 31 H 1.09004 * 109.52251 * 62.27356 * 16 6 5
32 32 H 1.09003 * 109.52072 * 182.39272 * 16 6 5
33 33 H 1.09000 * 109.50007 * 177.59300 * 17 16 6
34 34 H 1.08995 * 109.50485 * 297.71093 * 17 16 6
35 35 H 1.09005 * 109.47476 * 175.32110 * 19 18 4
36 36 H 1.08995 * 109.47366 * 295.32263 * 19 18 4
37 37 H 1.08999 * 109.46947 * 55.32690 * 19 18 4
38 38 H 1.09004 * 109.46473 * 307.61965 * 20 18 4
39 39 H 1.08995 * 109.47021 * 67.61852 * 20 18 4
40 40 H 1.08998 * 109.47211 * 187.62292 * 20 18 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 7 2.0197 -0.6924 1.1995
5 6 3.3065 -0.1377 1.6387
6 6 3.7142 -0.7810 2.9661
7 1 2.9614 -0.5616 3.7234
8 6 5.0455 -0.2282 3.4053
9 1 5.7313 0.1733 2.6738
10 6 5.3881 -0.2347 4.7408
11 7 4.5177 -0.6366 5.6410
12 14 7.0887 0.3274 5.2715
13 1 7.8733 0.7276 4.0759
14 1 6.9623 1.4865 6.1910
15 1 7.7822 -0.7849 5.9696
16 6 3.8261 -2.2969 2.7809
17 6 2.4867 -2.8419 2.2774
18 6 2.1151 -2.1396 0.9695
19 6 3.1904 -2.4188 -0.0825
20 6 0.7674 -2.6669 0.4728
21 1 -0.3633 0.4340 -0.9316
22 1 -0.3634 -1.0237 0.0898
23 1 -0.3633 0.5896 0.8416
24 1 1.8933 -0.5138 -0.8900
25 1 3.1256 1.4441 -0.0972
26 1 1.5995 1.9836 -0.8374
27 1 1.7582 1.9276 0.9346
28 1 3.2118 0.9400 1.7714
29 1 4.0668 -0.3455 0.8859
30 1 3.6632 -1.0003 5.3609
31 1 4.6064 -2.5182 2.0528
32 1 4.0749 -2.7629 3.7344
33 1 2.5729 -3.9144 2.1028
34 1 1.7142 -2.6549 3.0232
35 1 3.3197 -3.4955 -0.1931
36 1 2.8852 -1.9896 -1.0368
37 1 4.1324 -1.9703 0.2330
38 1 -0.0207 -2.3501 1.1560
39 1 0.5666 -2.2705 -0.5224
40 1 0.7962 -3.7557 0.4313
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000259187550.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:59:15
Heat of formation + Delta-G solvation = -23.301666 kcal
Electronic energy + Delta-G solvation = -17230.316034 eV
Core-core repulsion = 14850.880964 eV
Total energy + Delta-G solvation = -2379.435070 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 225.179 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-41.25512 -36.71746 -35.33606 -33.27274 -31.27895 -28.97842 -28.58336 -27.45257
-25.75128 -24.35918 -22.17219 -21.26423 -19.23456 -18.72015 -17.11209 -16.42049
-16.09305 -15.67574 -15.02322 -14.82764 -14.73471 -14.37053 -14.07913 -13.54313
-13.33919 -13.15707 -13.12128 -12.83478 -12.65959 -12.60890 -12.47607 -12.28890
-11.95679 -11.92829 -11.64932 -11.54803 -11.44872 -11.17718 -10.78479 -10.45610
-10.32297 -8.98808 -8.57976 -6.28315 1.50913 1.60123 1.75972 2.56546
3.02463 3.23210 3.86678 3.93702 4.07461 4.14764 4.23862 4.32473
4.46924 4.50388 4.60807 4.67970 4.69850 4.75644 4.81353 4.91035
4.92497 4.95520 4.96366 5.03446 5.05510 5.10927 5.18049 5.22518
5.27515 5.34325 5.49652 5.54738 5.60651 5.82472 6.06278 6.25726
6.42343 6.48639 6.72011 7.52417 8.80981
Molecular weight = 225.18amu
Principal moments of inertia in cm(-1)
A = 0.034649 B = 0.008605 C = 0.007741
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 807.917250 B = 3253.329770 C = 3616.355607
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C 0.069 3.931
3 C -0.150 4.150
4 N -0.536 5.536
5 C 0.085 3.915
6 C 0.032 3.968
7 H -0.001 1.001
8 C -0.604 4.604
9 H 0.040 0.960
10 C -0.031 4.031
11 N -0.939 5.939
12 Si 1.115 2.885
13 H -0.273 1.273
14 H -0.280 1.280
15 H -0.280 1.280
16 C -0.099 4.099
17 C -0.100 4.100
18 C 0.108 3.892
19 C -0.175 4.175
20 C -0.134 4.134
21 H 0.070 0.930
22 H 0.080 0.920
23 H 0.043 0.957
24 H 0.054 0.946
25 H 0.043 0.957
26 H 0.079 0.921
27 H 0.046 0.954
28 H 0.056 0.944
29 H 0.018 0.982
30 H 0.258 0.742
31 H 0.043 0.957
32 H 0.017 0.983
33 H 0.072 0.928
34 H 0.047 0.953
35 H 0.070 0.930
36 H 0.065 0.935
37 H 0.041 0.959
38 H 0.062 0.938
39 H 0.074 0.926
40 H 0.069 0.931
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.567 -2.122 -13.345 15.023
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.039 4.039
3 C -0.207 4.207
4 N -0.261 5.261
5 C -0.043 4.043
6 C 0.013 3.987
7 H 0.017 0.983
8 C -0.642 4.642
9 H 0.058 0.942
10 C -0.229 4.229
11 N -0.577 5.577
12 Si 0.938 3.062
13 H -0.198 1.198
14 H -0.206 1.206
15 H -0.206 1.206
16 C -0.137 4.137
17 C -0.138 4.138
18 C 0.018 3.982
19 C -0.234 4.234
20 C -0.192 4.192
21 H 0.089 0.911
22 H 0.099 0.901
23 H 0.062 0.938
24 H 0.071 0.929
25 H 0.062 0.938
26 H 0.098 0.902
27 H 0.065 0.935
28 H 0.074 0.926
29 H 0.036 0.964
30 H 0.069 0.931
31 H 0.062 0.938
32 H 0.036 0.964
33 H 0.091 0.909
34 H 0.066 0.934
35 H 0.089 0.911
36 H 0.084 0.916
37 H 0.060 0.940
38 H 0.080 0.920
39 H 0.093 0.907
40 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges -5.982 -1.745 -11.666 13.226
hybrid contribution -0.124 -0.311 -1.382 1.422
sum -6.106 -2.057 -13.048 14.552
Atomic orbital electron populations
1.22247 0.93334 1.03796 1.01471 1.21775 0.96863 0.93985 0.91266
1.22034 1.00407 0.96263 1.02034 1.62276 1.27727 1.03093 1.33008
1.21975 0.88483 0.98133 0.95703 1.18824 0.94572 0.92256 0.93032
0.98294 1.22329 1.03236 1.43506 0.95153 0.94153 1.27168 1.06996
0.95157 0.93587 1.70831 1.08629 1.41613 1.36650 0.82962 0.70951
0.76593 0.75720 1.19786 1.20625 1.20632 1.21584 0.96262 0.98030
0.97835 1.21634 0.96664 0.98893 0.96607 1.21052 0.95923 0.87491
0.93719 1.22434 0.99283 1.02511 0.99124 1.22124 0.94779 1.00997
1.01251 0.91088 0.90107 0.93782 0.92863 0.93824 0.90229 0.93450
0.92556 0.96395 0.93143 0.93828 0.96422 0.90907 0.93436 0.91073
0.91610 0.94033 0.91958 0.90742 0.91228
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.58 8.90 71.98 0.64 -2.94 16
2 C 0.07 1.96 2.32 44.92 0.10 2.06 16
3 C -0.15 -4.27 7.83 71.98 0.56 -3.71 16
4 N -0.54 -19.17 4.35 -821.89 -3.58 -22.75 16
5 C 0.08 3.68 3.30 86.33 0.28 3.97 16
6 C 0.03 1.68 1.99 -11.49 -0.02 1.65 16
7 H 0.00 -0.07 6.68 -2.38 -0.02 -0.09 16
8 C -0.60 -34.75 8.32 25.60 0.21 -34.54 16
9 H 0.04 2.31 7.81 -2.91 -0.02 2.29 16
10 C -0.03 -1.83 5.46 84.66 0.46 -1.37 16
11 N -0.94 -58.95 13.63 21.45 0.29 -58.66 16
12 Si 1.12 51.73 29.91 68.60 2.05 53.78 16
13 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16
14 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16
15 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16
16 C -0.10 -4.61 4.96 30.67 0.15 -4.46 16
17 C -0.10 -3.73 4.89 30.64 0.15 -3.58 16
18 C 0.11 3.43 0.67 3.55 0.00 3.43 16
19 C -0.18 -5.19 7.42 71.98 0.53 -4.65 16
20 C -0.13 -3.27 6.75 71.98 0.49 -2.78 16
21 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16
22 H 0.08 1.79 3.95 -2.39 -0.01 1.78 16
23 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16
24 H 0.05 1.42 5.62 -2.39 -0.01 1.40 16
25 H 0.04 1.34 6.89 -2.39 -0.02 1.32 16
26 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16
27 H 0.05 1.50 7.55 -2.39 -0.02 1.48 16
28 H 0.06 2.55 5.83 -2.39 -0.01 2.54 16
29 H 0.02 0.79 6.04 -2.39 -0.01 0.77 16
30 H 0.26 16.51 6.66 -92.71 -0.62 15.89 16
31 H 0.04 1.99 6.67 -2.38 -0.02 1.98 16
32 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16
33 H 0.07 2.33 8.14 -2.39 -0.02 2.32 16
34 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16
35 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16
36 H 0.07 1.70 6.39 -2.39 -0.02 1.69 16
37 H 0.04 1.46 4.80 -2.39 -0.01 1.45 16
38 H 0.06 1.58 7.13 -2.38 -0.02 1.56 16
39 H 0.07 1.55 6.01 -2.39 -0.01 1.54 16
40 H 0.07 1.46 8.13 -2.39 -0.02 1.44 16
Total: -1.00 -64.72 285.15 3.49 -61.23
By element:
Atomic # 1 Polarization: 12.15 SS G_CDS: 1.15 Total: 13.30 kcal
Atomic # 6 Polarization: -50.48 SS G_CDS: 3.57 Total: -46.91 kcal
Atomic # 7 Polarization: -78.12 SS G_CDS: -3.28 Total: -81.41 kcal
Atomic # 14 Polarization: 51.73 SS G_CDS: 2.05 Total: 53.78 kcal
Total: -64.72 3.49 -61.23 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259187550.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 37.928 kcal
(2) G-P(sol) polarization free energy of solvation -64.718 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.790 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.488 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.230 kcal
(6) G-S(sol) free energy of system = (1) + (5) -23.302 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds