Wall clock time and date at job start Mon Mar 30 2020 02:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47028 * 2 1 4 4 N 1.46907 * 109.47039 * 185.98217 * 3 2 1 5 5 C 1.46846 * 110.99961 * 303.46380 * 4 3 2 6 6 C 1.53036 * 109.52448 * 174.16154 * 5 4 3 7 7 C 1.53117 * 109.27632 * 59.18127 * 6 5 4 8 8 C 1.53122 * 109.16023 * 302.34374 * 7 6 5 9 9 H 1.09001 * 109.50430 * 297.71453 * 8 7 6 10 10 C 1.50697 * 109.50095 * 177.63837 * 8 7 6 11 11 H 1.08003 * 119.99879 * 265.24146 * 10 8 7 12 12 C 1.37875 * 120.00301 * 85.24862 * 10 8 7 13 13 N 1.31513 * 120.00121 * 185.12206 * 12 10 8 14 14 Si 1.86802 * 120.00002 * 5.11544 * 12 10 8 15 15 H 1.48495 * 109.47110 * 94.78672 * 14 12 10 16 16 H 1.48493 * 109.46856 * 214.79178 * 14 12 10 17 17 H 1.48504 * 109.46749 * 334.78814 * 14 12 10 18 18 C 1.46846 * 110.99904 * 179.25835 * 4 3 2 19 19 C 1.53001 * 109.46578 * 65.82210 * 18 4 3 20 20 C 1.53001 * 109.45256 * 305.84868 * 18 4 3 21 21 H 1.08998 * 109.47073 * 299.99701 * 1 2 3 22 22 H 1.08994 * 109.47070 * 59.99740 * 1 2 3 23 23 H 1.09003 * 109.46895 * 179.97438 * 1 2 3 24 24 H 1.09007 * 109.46904 * 240.00023 * 2 1 3 25 25 H 1.08997 * 109.47576 * 120.00278 * 2 1 3 26 26 H 1.08998 * 109.46852 * 65.98741 * 3 2 1 27 27 H 1.08993 * 109.47568 * 305.98112 * 3 2 1 28 28 H 1.09004 * 109.46123 * 54.14339 * 5 4 3 29 29 H 1.09002 * 109.46272 * 294.17913 * 5 4 3 30 30 H 1.09001 * 109.50637 * 179.12204 * 6 5 4 31 31 H 1.09004 * 109.50063 * 299.19628 * 6 5 4 32 32 H 1.08997 * 109.52633 * 62.25433 * 7 6 5 33 33 H 1.09001 * 109.52178 * 182.37923 * 7 6 5 34 34 H 0.97005 * 120.00018 * 179.97438 * 13 12 10 35 35 H 1.09002 * 109.47021 * 176.00494 * 19 18 4 36 36 H 1.09007 * 109.46789 * 296.00337 * 19 18 4 37 37 H 1.08994 * 109.46791 * 55.99889 * 19 18 4 38 38 H 1.09003 * 109.47035 * 299.95346 * 20 18 4 39 39 H 1.08995 * 109.47309 * 59.95068 * 20 18 4 40 40 H 1.08996 * 109.47399 * 179.97438 * 20 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5019 1.4450 -0.1443 5 6 4.1367 0.6507 0.9151 6 6 5.6411 0.5551 0.6510 7 6 6.2388 1.9644 0.6163 8 6 5.5273 2.7856 -0.4626 9 1 5.6963 2.3293 -1.4379 10 6 6.0698 4.1915 -0.4641 11 1 5.5665 4.9651 0.0970 12 6 7.2084 4.4904 -1.1819 13 7 7.7391 5.6911 -1.1032 14 14 7.9974 3.1897 -2.2659 15 1 7.5029 3.3390 -3.6580 16 1 9.4729 3.3558 -2.2441 17 1 7.6437 1.8402 -1.7569 18 6 4.0262 2.8165 -0.1661 19 6 3.7888 3.4748 1.1945 20 6 3.3084 3.6193 -1.2529 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.7668 1.9244 0.9387 27 1 1.5919 1.9863 -0.8315 28 1 3.7056 -0.3504 0.9263 29 1 3.9670 1.1298 1.8794 30 1 6.1143 -0.0214 1.4459 31 1 5.8119 0.0629 -0.3065 32 1 6.1026 2.4418 1.5866 33 1 7.3025 1.9033 0.3866 34 1 8.5404 5.9013 -1.6079 35 1 4.2404 4.4668 1.2020 36 1 2.7171 3.5620 1.3738 37 1 4.2395 2.8644 1.9770 38 1 3.4778 3.1506 -2.2224 39 1 2.2393 3.6413 -1.0420 40 1 3.6970 4.6375 -1.2691 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259274845.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:31 Heat of formation + Delta-G solvation = -11.758948 kcal Electronic energy + Delta-G solvation = -17131.417790 eV Core-core repulsion = 14752.483250 eV Total energy + Delta-G solvation = -2378.934540 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.50508 -35.00622 -32.76570 -32.51094 -30.91809 -27.36467 -26.52249 -25.42794 -24.59202 -22.20787 -20.42928 -20.03806 -17.51236 -16.82265 -15.34318 -15.10919 -14.71404 -14.03353 -13.93199 -13.41388 -13.23336 -12.70138 -12.37515 -12.28267 -12.03494 -11.92265 -11.43166 -11.27008 -11.08271 -11.02766 -10.97230 -10.69133 -10.58797 -10.52074 -10.22967 -9.85941 -9.61950 -9.39820 -9.01570 -8.76093 -8.42677 -7.58591 -6.01469 -3.98798 3.34138 3.43362 3.49009 4.44456 4.50059 5.08374 5.17928 5.28215 5.40457 5.57901 5.62029 5.74229 5.74581 5.80525 5.90517 5.96565 6.04654 6.10112 6.12369 6.24210 6.29617 6.36630 6.41942 6.46979 6.51896 6.60553 6.71982 6.75139 6.92585 7.00745 7.05977 7.15135 7.36146 7.62018 7.71281 7.81243 8.02023 8.60581 9.03862 9.63045 11.11169 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.036796 B = 0.008843 C = 0.008337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.775404 B = 3165.455561 C = 3357.806298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C 0.050 3.950 4 N -0.532 5.532 5 C 0.055 3.945 6 C -0.120 4.120 7 C -0.116 4.116 8 C 0.033 3.967 9 H 0.036 0.964 10 C -0.504 4.504 11 H 0.077 0.923 12 C 0.071 3.929 13 N -0.903 5.903 14 Si 0.869 3.131 15 H -0.280 1.280 16 H -0.292 1.292 17 H -0.257 1.257 18 C 0.122 3.878 19 C -0.170 4.170 20 C -0.127 4.127 21 H 0.050 0.950 22 H 0.053 0.947 23 H 0.051 0.949 24 H 0.068 0.932 25 H 0.058 0.942 26 H 0.028 0.972 27 H 0.075 0.925 28 H 0.063 0.937 29 H 0.030 0.970 30 H 0.049 0.951 31 H 0.059 0.941 32 H 0.052 0.948 33 H 0.049 0.951 34 H 0.261 0.739 35 H 0.075 0.925 36 H 0.032 0.968 37 H 0.050 0.950 38 H 0.050 0.950 39 H 0.034 0.966 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.109 -9.917 2.732 14.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.078 4.078 4 N -0.256 5.256 5 C -0.073 4.073 6 C -0.158 4.158 7 C -0.154 4.154 8 C 0.014 3.986 9 H 0.054 0.946 10 C -0.542 4.542 11 H 0.095 0.905 12 C -0.130 4.130 13 N -0.542 5.542 14 Si 0.697 3.303 15 H -0.206 1.206 16 H -0.218 1.218 17 H -0.181 1.181 18 C 0.033 3.967 19 C -0.229 4.229 20 C -0.184 4.184 21 H 0.069 0.931 22 H 0.072 0.928 23 H 0.070 0.930 24 H 0.087 0.913 25 H 0.076 0.924 26 H 0.046 0.954 27 H 0.093 0.907 28 H 0.081 0.919 29 H 0.048 0.952 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.094 0.906 36 H 0.051 0.949 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.053 0.947 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.842 -10.018 2.212 14.217 hybrid contribution 0.388 -0.223 0.206 0.493 sum -9.453 -10.242 2.418 14.146 Atomic orbital electron populations 1.21732 0.96162 1.01182 1.01617 1.21610 0.94985 0.97395 1.02188 1.22180 0.89392 0.96052 1.00162 1.62294 1.03302 1.14086 1.45926 1.22080 0.95303 0.96992 0.92897 1.21673 0.94363 0.99087 1.00682 1.21957 0.99408 0.93125 1.00881 1.19133 0.88928 0.96011 0.94547 0.94609 1.21050 1.09965 0.93191 1.29992 0.90544 1.24996 0.96563 0.94967 0.96448 1.69915 1.21652 1.20420 1.42191 0.86975 0.78249 0.83669 0.81431 1.20630 1.21815 1.18138 1.21007 0.97088 0.84819 0.93747 1.22433 0.98960 1.02994 0.98503 1.21796 0.97232 1.01286 0.98134 0.93089 0.92752 0.93015 0.91332 0.92369 0.95406 0.90664 0.91880 0.95157 0.93229 0.92205 0.92916 0.93221 0.92876 0.90644 0.94867 0.93069 0.93043 0.94731 0.90794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.91 37.16 0.37 -1.16 16 2 C -0.12 -1.54 5.40 -26.73 -0.14 -1.68 16 3 C 0.05 0.74 4.24 -3.82 -0.02 0.73 16 4 N -0.53 -9.39 4.51 -219.01 -0.99 -10.38 16 5 C 0.06 0.91 4.85 -3.83 -0.02 0.89 16 6 C -0.12 -2.15 6.09 -26.65 -0.16 -2.31 16 7 C -0.12 -2.47 4.65 -26.61 -0.12 -2.59 16 8 C 0.03 0.76 1.09 -91.69 -0.10 0.66 16 9 H 0.04 0.88 5.71 -51.93 -0.30 0.58 16 10 C -0.50 -13.51 7.29 -34.44 -0.25 -13.76 16 11 H 0.08 2.20 6.21 -52.48 -0.33 1.88 16 12 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 13 N -0.90 -27.26 13.96 55.43 0.77 -26.48 16 14 Si 0.87 21.60 26.40 -169.99 -4.49 17.11 16 15 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 16 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 17 H -0.26 -6.14 5.85 56.52 0.33 -5.81 16 18 C 0.12 2.42 0.46 -131.61 -0.06 2.36 16 19 C -0.17 -3.25 7.18 37.16 0.27 -2.99 16 20 C -0.13 -2.46 7.81 37.16 0.29 -2.17 16 21 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 22 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.06 0.71 6.58 -51.93 -0.34 0.37 16 26 H 0.03 0.42 6.58 -51.93 -0.34 0.08 16 27 H 0.08 1.12 6.16 -51.93 -0.32 0.80 16 28 H 0.06 0.92 6.05 -51.93 -0.31 0.61 16 29 H 0.03 0.51 6.11 -51.93 -0.32 0.19 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.05 1.12 6.65 -51.93 -0.35 0.78 16 33 H 0.05 1.11 6.73 -51.93 -0.35 0.76 16 34 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 35 H 0.07 1.59 6.12 -51.93 -0.32 1.27 16 36 H 0.03 0.57 6.76 -51.93 -0.35 0.21 16 37 H 0.05 0.96 4.80 -51.93 -0.25 0.71 16 38 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.03 0.58 6.31 -51.93 -0.33 0.25 16 40 H 0.07 1.56 7.22 -51.93 -0.38 1.19 16 LS Contribution 282.67 15.07 4.26 4.26 Total: -1.00 -28.45 282.67 -7.23 -35.68 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -6.74 Total: -0.09 kcal Atomic # 6 Polarization: -20.05 SS G_CDS: -0.05 Total: -20.10 kcal Atomic # 7 Polarization: -36.64 SS G_CDS: -0.21 Total: -36.86 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.49 Total: 17.11 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -28.45 -7.23 -35.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259274845.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.919 kcal (2) G-P(sol) polarization free energy of solvation -28.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds