Wall clock time and date at job start Mon Mar 30 2020 02:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47028 * 2 1 4 4 N 1.46907 * 109.47039 * 185.98217 * 3 2 1 5 5 C 1.46846 * 110.99961 * 303.46380 * 4 3 2 6 6 C 1.53036 * 109.52448 * 174.16154 * 5 4 3 7 7 C 1.53117 * 109.27632 * 59.18127 * 6 5 4 8 8 C 1.53122 * 109.16023 * 302.34374 * 7 6 5 9 9 H 1.09001 * 109.50430 * 297.71453 * 8 7 6 10 10 C 1.50697 * 109.50095 * 177.63837 * 8 7 6 11 11 H 1.08003 * 119.99879 * 265.24146 * 10 8 7 12 12 C 1.37875 * 120.00301 * 85.24862 * 10 8 7 13 13 N 1.31513 * 120.00121 * 185.12206 * 12 10 8 14 14 Si 1.86802 * 120.00002 * 5.11544 * 12 10 8 15 15 H 1.48495 * 109.47110 * 94.78672 * 14 12 10 16 16 H 1.48493 * 109.46856 * 214.79178 * 14 12 10 17 17 H 1.48504 * 109.46749 * 334.78814 * 14 12 10 18 18 C 1.46846 * 110.99904 * 179.25835 * 4 3 2 19 19 C 1.53001 * 109.46578 * 65.82210 * 18 4 3 20 20 C 1.53001 * 109.45256 * 305.84868 * 18 4 3 21 21 H 1.08998 * 109.47073 * 299.99701 * 1 2 3 22 22 H 1.08994 * 109.47070 * 59.99740 * 1 2 3 23 23 H 1.09003 * 109.46895 * 179.97438 * 1 2 3 24 24 H 1.09007 * 109.46904 * 240.00023 * 2 1 3 25 25 H 1.08997 * 109.47576 * 120.00278 * 2 1 3 26 26 H 1.08998 * 109.46852 * 65.98741 * 3 2 1 27 27 H 1.08993 * 109.47568 * 305.98112 * 3 2 1 28 28 H 1.09004 * 109.46123 * 54.14339 * 5 4 3 29 29 H 1.09002 * 109.46272 * 294.17913 * 5 4 3 30 30 H 1.09001 * 109.50637 * 179.12204 * 6 5 4 31 31 H 1.09004 * 109.50063 * 299.19628 * 6 5 4 32 32 H 1.08997 * 109.52633 * 62.25433 * 7 6 5 33 33 H 1.09001 * 109.52178 * 182.37923 * 7 6 5 34 34 H 0.97005 * 120.00018 * 179.97438 * 13 12 10 35 35 H 1.09002 * 109.47021 * 176.00494 * 19 18 4 36 36 H 1.09007 * 109.46789 * 296.00337 * 19 18 4 37 37 H 1.08994 * 109.46791 * 55.99889 * 19 18 4 38 38 H 1.09003 * 109.47035 * 299.95346 * 20 18 4 39 39 H 1.08995 * 109.47309 * 59.95068 * 20 18 4 40 40 H 1.08996 * 109.47399 * 179.97438 * 20 18 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5019 1.4450 -0.1443 5 6 4.1367 0.6507 0.9151 6 6 5.6411 0.5551 0.6510 7 6 6.2388 1.9644 0.6163 8 6 5.5273 2.7856 -0.4626 9 1 5.6963 2.3293 -1.4379 10 6 6.0698 4.1915 -0.4641 11 1 5.5665 4.9651 0.0970 12 6 7.2084 4.4904 -1.1819 13 7 7.7391 5.6911 -1.1032 14 14 7.9974 3.1897 -2.2659 15 1 7.5029 3.3390 -3.6580 16 1 9.4729 3.3558 -2.2441 17 1 7.6437 1.8402 -1.7569 18 6 4.0262 2.8165 -0.1661 19 6 3.7888 3.4748 1.1945 20 6 3.3084 3.6193 -1.2529 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.7668 1.9244 0.9387 27 1 1.5919 1.9863 -0.8315 28 1 3.7056 -0.3504 0.9263 29 1 3.9670 1.1298 1.8794 30 1 6.1143 -0.0214 1.4459 31 1 5.8119 0.0629 -0.3065 32 1 6.1026 2.4418 1.5866 33 1 7.3025 1.9033 0.3866 34 1 8.5404 5.9013 -1.6079 35 1 4.2404 4.4668 1.2020 36 1 2.7171 3.5620 1.3738 37 1 4.2395 2.8644 1.9770 38 1 3.4778 3.1506 -2.2224 39 1 2.2393 3.6413 -1.0420 40 1 3.6970 4.6375 -1.2691 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259274845.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:31 Heat of formation + Delta-G solvation = -29.392814 kcal Electronic energy + Delta-G solvation = -17132.182451 eV Core-core repulsion = 14752.483250 eV Total energy + Delta-G solvation = -2379.699202 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.00697 -36.38378 -34.48647 -34.09887 -32.46265 -28.98315 -28.11684 -26.79920 -26.17735 -23.65510 -21.94678 -21.35600 -19.19171 -18.79047 -16.83273 -16.32895 -16.17797 -15.91016 -15.42383 -14.76175 -14.63187 -14.51467 -13.87781 -13.61729 -13.48130 -13.22821 -13.03677 -12.80165 -12.66675 -12.55552 -12.45091 -12.19736 -12.08505 -11.81604 -11.62264 -11.52356 -11.33341 -11.11170 -10.74851 -10.58615 -10.49391 -8.96685 -8.21199 -6.20371 1.34249 1.38218 1.49647 2.40209 3.10109 3.16670 4.03857 4.06174 4.12692 4.26066 4.30438 4.34115 4.48973 4.55214 4.64686 4.71998 4.78318 4.82269 4.84007 4.89500 4.97153 5.03605 5.10660 5.14071 5.20863 5.25253 5.30099 5.34204 5.39559 5.40913 5.49975 5.50769 5.62296 5.75195 5.89725 6.30785 6.48809 6.54979 6.87075 7.43846 8.94861 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.036796 B = 0.008843 C = 0.008337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.775404 B = 3165.455561 C = 3357.806298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.118 4.118 3 C 0.050 3.950 4 N -0.540 5.540 5 C 0.056 3.944 6 C -0.115 4.115 7 C -0.116 4.116 8 C 0.031 3.969 9 H 0.023 0.977 10 C -0.491 4.491 11 H 0.045 0.955 12 C 0.013 3.987 13 N -0.952 5.952 14 Si 0.926 3.074 15 H -0.278 1.278 16 H -0.292 1.292 17 H -0.241 1.241 18 C 0.123 3.877 19 C -0.161 4.161 20 C -0.122 4.122 21 H 0.054 0.946 22 H 0.054 0.946 23 H 0.065 0.935 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.030 0.970 27 H 0.073 0.927 28 H 0.092 0.908 29 H 0.033 0.967 30 H 0.076 0.924 31 H 0.056 0.944 32 H 0.047 0.953 33 H 0.033 0.967 34 H 0.261 0.739 35 H 0.044 0.956 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.046 0.954 39 H 0.062 0.938 40 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.720 -12.707 3.080 17.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.155 4.155 3 C -0.078 4.078 4 N -0.264 5.264 5 C -0.072 4.072 6 C -0.152 4.152 7 C -0.154 4.154 8 C 0.012 3.988 9 H 0.041 0.959 10 C -0.530 4.530 11 H 0.063 0.937 12 C -0.183 4.183 13 N -0.594 5.594 14 Si 0.752 3.248 15 H -0.204 1.204 16 H -0.219 1.219 17 H -0.164 1.164 18 C 0.034 3.966 19 C -0.220 4.220 20 C -0.180 4.180 21 H 0.073 0.927 22 H 0.073 0.927 23 H 0.084 0.916 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.048 0.952 27 H 0.092 0.908 28 H 0.110 0.890 29 H 0.051 0.949 30 H 0.095 0.905 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.051 0.949 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.081 0.919 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -11.475 -12.834 2.568 17.406 hybrid contribution 0.816 0.685 0.152 1.077 sum -10.658 -12.148 2.720 16.389 Atomic orbital electron populations 1.21702 0.94502 1.02248 1.01893 1.21558 0.96368 0.95365 1.02253 1.22271 0.87356 0.98016 1.00142 1.62237 1.05128 1.12188 1.46824 1.22146 0.94297 0.98272 0.92475 1.21631 0.95474 0.96538 1.01605 1.21846 0.98457 0.95420 0.99645 1.19091 0.91573 0.93526 0.94614 0.95921 1.21309 1.08995 0.94629 1.28057 0.93736 1.25746 0.97574 0.96753 0.98209 1.70053 1.22637 1.22623 1.44066 0.86054 0.77122 0.82003 0.79651 1.20406 1.21901 1.16385 1.20802 0.95042 0.86752 0.94028 1.22314 1.00149 1.01186 0.98334 1.21721 0.98873 0.99425 0.97969 0.92663 0.92681 0.91601 0.91813 0.91690 0.95195 0.90844 0.89031 0.94932 0.90528 0.92565 0.93451 0.94856 0.93010 0.93654 0.92652 0.92676 0.93472 0.91929 0.93674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 9.91 71.98 0.71 -1.73 16 2 C -0.12 -2.46 5.40 30.59 0.17 -2.30 16 3 C 0.05 1.31 4.24 86.30 0.37 1.67 16 4 N -0.54 -17.55 4.51 -846.82 -3.82 -21.37 16 5 C 0.06 1.64 4.85 86.33 0.42 2.05 16 6 C -0.11 -3.76 6.09 30.65 0.19 -3.57 16 7 C -0.12 -4.81 4.65 30.67 0.14 -4.66 16 8 C 0.03 1.44 1.09 -11.49 -0.01 1.42 16 9 H 0.02 1.10 5.71 -2.39 -0.01 1.08 16 10 C -0.49 -27.14 7.29 25.60 0.19 -26.96 16 11 H 0.04 2.70 6.21 -2.91 -0.02 2.68 16 12 C 0.01 0.77 5.47 84.65 0.46 1.23 16 13 N -0.95 -59.62 13.96 21.45 0.30 -59.32 16 14 Si 0.93 45.19 26.40 68.60 1.81 47.01 16 15 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 16 H -0.29 -14.21 7.11 99.48 0.71 -13.51 16 17 H -0.24 -10.97 5.85 99.48 0.58 -10.39 16 18 C 0.12 4.76 0.46 3.55 0.00 4.76 16 19 C -0.16 -6.02 7.18 71.98 0.52 -5.50 16 20 C -0.12 -4.67 7.81 71.98 0.56 -4.11 16 21 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 22 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 23 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 25 H 0.06 1.28 6.58 -2.39 -0.02 1.26 16 26 H 0.03 0.79 6.58 -2.39 -0.02 0.77 16 27 H 0.07 1.96 6.16 -2.39 -0.01 1.95 16 28 H 0.09 2.23 6.05 -2.39 -0.01 2.22 16 29 H 0.03 0.96 6.11 -2.39 -0.01 0.95 16 30 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.05 1.99 6.65 -2.39 -0.02 1.97 16 33 H 0.03 1.46 6.73 -2.39 -0.02 1.44 16 34 H 0.26 15.48 8.31 -92.70 -0.77 14.71 16 35 H 0.04 1.95 6.12 -2.39 -0.01 1.94 16 36 H 0.05 1.79 6.76 -2.38 -0.02 1.77 16 37 H 0.05 1.98 4.80 -2.39 -0.01 1.97 16 38 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.06 2.00 6.31 -2.39 -0.02 1.98 16 40 H 0.04 1.95 7.22 -2.39 -0.02 1.93 16 Total: -1.00 -62.34 282.67 2.88 -59.47 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: 0.88 Total: 11.91 kcal Atomic # 6 Polarization: -41.40 SS G_CDS: 3.71 Total: -37.69 kcal Atomic # 7 Polarization: -77.17 SS G_CDS: -3.52 Total: -80.69 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.81 Total: 47.01 kcal Total: -62.34 2.88 -59.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259274845.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.074 kcal (2) G-P(sol) polarization free energy of solvation -62.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds