Wall clock time and date at job start Mon Mar 30 2020 02:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47283 * 2 1 4 4 H 1.09002 * 109.46695 * 55.00640 * 3 2 1 5 5 C 1.52999 * 109.47061 * 175.00070 * 3 2 1 6 6 N 1.46895 * 109.47303 * 295.00535 * 3 2 1 7 7 C 1.48532 * 110.99947 * 272.35651 * 6 3 2 8 8 C 1.54934 * 103.23014 * 200.27901 * 7 6 3 9 9 C 1.54598 * 102.92215 * 37.41406 * 8 7 6 10 10 H 1.09003 * 110.30500 * 96.96049 * 9 8 7 11 11 C 1.50699 * 110.30955 * 219.12666 * 9 8 7 12 12 H 1.08003 * 119.99301 * 115.71373 * 11 9 8 13 13 C 1.37865 * 120.00058 * 295.71655 * 11 9 8 14 14 N 1.31518 * 120.00107 * 180.02562 * 13 11 9 15 15 Si 1.86800 * 120.00394 * 0.02562 * 13 11 9 16 16 H 1.48497 * 109.47466 * 89.99873 * 15 13 11 17 17 H 1.48498 * 109.47344 * 210.00571 * 15 13 11 18 18 H 1.48507 * 109.46940 * 330.00284 * 15 13 11 19 19 C 1.47898 * 111.00173 * 154.96170 * 6 3 2 20 20 C 1.52996 * 109.91823 * 265.19602 * 19 6 3 21 21 C 1.53005 * 109.91691 * 26.49022 * 19 6 3 22 22 H 1.08999 * 109.47644 * 59.99543 * 1 2 3 23 23 H 1.09000 * 109.47184 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46913 * 299.99499 * 1 2 3 25 25 H 1.09001 * 109.46913 * 240.00501 * 2 1 3 26 26 H 1.08999 * 109.47644 * 120.00456 * 2 1 3 27 27 H 1.08998 * 109.47036 * 51.69200 * 5 3 2 28 28 H 1.09002 * 109.47717 * 291.68885 * 5 3 2 29 29 H 1.09001 * 109.46942 * 171.69127 * 5 3 2 30 30 H 1.08998 * 110.67086 * 318.71958 * 7 6 3 31 31 H 1.09008 * 110.66760 * 81.84258 * 7 6 3 32 32 H 1.09002 * 110.72611 * 279.05968 * 8 7 6 33 33 H 1.08997 * 110.87854 * 155.84276 * 8 7 6 34 34 H 0.96997 * 120.00409 * 180.02562 * 14 13 11 35 35 H 1.09001 * 109.47001 * 61.45320 * 20 19 6 36 36 H 1.08997 * 109.47165 * 181.45119 * 20 19 6 37 37 H 1.09001 * 109.47159 * 301.45073 * 20 19 6 38 38 H 1.08998 * 109.46690 * 71.19901 * 21 19 6 39 39 H 1.08993 * 109.47205 * 191.19630 * 21 19 6 40 40 H 1.08996 * 109.46992 * 311.19755 * 21 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5648 1.4443 0.1257 6 7 1.6513 2.0993 -1.2551 7 6 2.6688 1.8707 -2.3128 8 6 2.3907 3.0106 -3.3247 9 6 2.0231 4.2021 -2.4108 10 1 2.8939 4.8374 -2.2489 11 6 0.8980 4.9997 -3.0184 12 1 -0.0562 5.0568 -2.5157 13 6 1.0869 5.6564 -4.2158 14 7 0.1052 6.3529 -4.7458 15 14 2.7371 5.5570 -5.0855 16 1 2.7412 4.3934 -6.0080 17 1 2.9644 6.8035 -5.8599 18 1 3.8177 5.3951 -4.0798 19 6 1.5712 3.5661 -1.0831 20 6 0.1304 3.9764 -0.7724 21 6 2.4992 4.0095 0.0497 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 3.9924 0.7845 -0.6293 28 1 3.8481 1.0928 1.1179 29 1 3.9404 2.4568 -0.0219 30 1 3.6753 1.9568 -1.9034 31 1 2.5249 0.8969 -2.7811 32 1 1.5559 2.7526 -3.9764 33 1 3.2813 3.2350 -3.9115 34 1 0.2379 6.8146 -5.5884 35 1 -0.1876 3.5090 0.1595 36 1 0.0748 5.0604 -0.6725 37 1 -0.5225 3.6523 -1.5828 38 1 3.5362 3.9147 -0.2721 39 1 2.2912 5.0487 0.3040 40 1 2.3312 3.3808 0.9241 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259472561.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:35 Heat of formation + Delta-G solvation = 1.326528 kcal Electronic energy + Delta-G solvation = -17327.750645 eV Core-core repulsion = 14949.383534 eV Total energy + Delta-G solvation = -2378.367111 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.28988 -36.61323 -34.33128 -33.21281 -32.01206 -29.95783 -28.32947 -27.09029 -24.78365 -24.24759 -22.89409 -20.67846 -19.20002 -18.58981 -16.92905 -16.45053 -16.42896 -15.43043 -15.05233 -14.91543 -14.51666 -14.33849 -14.13819 -13.78255 -13.59461 -13.10467 -12.91012 -12.81720 -12.46753 -12.30507 -12.22059 -12.06912 -12.02776 -11.73179 -11.62190 -11.41115 -11.39018 -11.05044 -10.89511 -10.65999 -10.62477 -9.02006 -8.18999 -6.19575 1.32979 1.34877 1.43718 2.38723 3.13195 3.20010 3.88727 3.95885 4.17800 4.22090 4.38369 4.40054 4.47597 4.56866 4.63975 4.64645 4.72847 4.81495 4.88750 4.90172 4.94225 5.08009 5.09606 5.12079 5.21394 5.22849 5.28039 5.31865 5.41358 5.43612 5.52949 5.60341 5.64164 5.68429 5.83752 6.32817 6.42856 6.56837 6.88395 7.44163 8.95941 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.035590 B = 0.009480 C = 0.008949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.543467 B = 2952.965419 C = 3127.985635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.102 4.102 3 C 0.064 3.936 4 H 0.080 0.920 5 C -0.191 4.191 6 N -0.507 5.507 7 C 0.039 3.961 8 C -0.132 4.132 9 C 0.009 3.991 10 H 0.024 0.976 11 C -0.504 4.504 12 H 0.065 0.935 13 C 0.010 3.990 14 N -0.954 5.954 15 Si 0.931 3.069 16 H -0.271 1.271 17 H -0.299 1.299 18 H -0.249 1.249 19 C 0.103 3.897 20 C -0.094 4.094 21 C -0.168 4.168 22 H 0.043 0.957 23 H 0.055 0.945 24 H 0.048 0.952 25 H 0.054 0.946 26 H 0.077 0.923 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.047 0.953 33 H 0.048 0.952 34 H 0.260 0.740 35 H 0.046 0.954 36 H 0.039 0.961 37 H 0.036 0.964 38 H 0.061 0.939 39 H 0.049 0.951 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.480 -11.748 10.628 17.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.140 4.140 3 C -0.045 4.045 4 H 0.098 0.902 5 C -0.249 4.249 6 N -0.230 5.230 7 C -0.089 4.089 8 C -0.170 4.170 9 C -0.011 4.011 10 H 0.042 0.958 11 C -0.542 4.542 12 H 0.083 0.917 13 C -0.185 4.185 14 N -0.596 5.596 15 Si 0.757 3.243 16 H -0.197 1.197 17 H -0.226 1.226 18 H -0.173 1.173 19 C 0.014 3.986 20 C -0.152 4.152 21 C -0.225 4.225 22 H 0.062 0.938 23 H 0.074 0.926 24 H 0.067 0.933 25 H 0.073 0.927 26 H 0.095 0.905 27 H 0.080 0.920 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.097 0.903 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.055 0.945 38 H 0.079 0.921 39 H 0.068 0.932 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.921 -11.877 10.353 17.209 hybrid contribution 0.992 0.906 -0.869 1.600 sum 7.913 -10.971 9.485 16.521 Atomic orbital electron populations 1.21616 0.96052 1.00793 1.01410 1.21451 0.96044 0.94781 1.01699 1.22042 0.94334 0.95788 0.92312 0.90216 1.22812 0.96496 1.02914 1.02701 1.64861 1.43662 1.07724 1.06786 1.23291 0.94978 0.98118 0.92469 1.22815 0.99032 0.96997 0.98199 1.20041 0.95184 0.93109 0.92724 0.95759 1.21789 0.99495 1.27639 1.05304 0.91657 1.25777 0.99316 0.95086 0.98350 1.70044 1.34115 1.35292 1.20159 0.86061 0.82115 0.76832 0.79255 1.19653 1.22609 1.17293 1.21553 0.95258 0.87329 0.94487 1.21490 0.95809 0.98930 0.98942 1.22776 0.99127 1.01682 0.98948 0.93802 0.92626 0.93310 0.92675 0.90475 0.92047 0.90903 0.91634 0.91660 0.90288 0.93372 0.93317 0.93066 0.93462 0.94187 0.94503 0.92076 0.93212 0.90001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 9.80 71.98 0.71 -2.71 16 2 C -0.10 -2.28 5.55 30.59 0.17 -2.11 16 3 C 0.06 1.62 1.84 44.92 0.08 1.70 16 4 H 0.08 2.04 6.05 -2.39 -0.01 2.03 16 5 C -0.19 -4.16 7.08 71.98 0.51 -3.65 16 6 N -0.51 -16.83 4.23 -809.29 -3.42 -20.25 16 7 C 0.04 1.28 5.78 86.65 0.50 1.78 16 8 C -0.13 -5.52 4.94 31.80 0.16 -5.36 16 9 C 0.01 0.40 2.04 -10.66 -0.02 0.38 16 10 H 0.02 1.14 6.56 -2.39 -0.02 1.12 16 11 C -0.50 -28.22 8.09 25.60 0.21 -28.01 16 12 H 0.07 3.96 4.94 -2.91 -0.01 3.94 16 13 C 0.01 0.61 5.46 84.65 0.46 1.07 16 14 N -0.95 -60.34 13.96 21.44 0.30 -60.04 16 15 Si 0.93 45.25 24.86 68.60 1.71 46.96 16 16 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 17 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 18 H -0.25 -11.21 6.40 99.48 0.64 -10.58 16 19 C 0.10 3.90 0.83 3.67 0.00 3.90 16 20 C -0.09 -3.82 7.31 71.98 0.53 -3.29 16 21 C -0.17 -5.22 6.81 71.98 0.49 -4.73 16 22 H 0.04 1.30 7.75 -2.39 -0.02 1.28 16 23 H 0.05 1.15 8.14 -2.39 -0.02 1.14 16 24 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.05 1.28 8.10 -2.39 -0.02 1.26 16 26 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.06 1.30 6.79 -2.39 -0.02 1.28 16 28 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.07 1.56 4.16 -2.39 -0.01 1.55 16 30 H 0.07 1.91 5.18 -2.39 -0.01 1.90 16 31 H 0.08 2.39 8.14 -2.38 -0.02 2.38 16 32 H 0.05 2.24 7.86 -2.39 -0.02 2.23 16 33 H 0.05 1.96 6.16 -2.39 -0.01 1.95 16 34 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 35 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.04 1.73 7.28 -2.39 -0.02 1.71 16 37 H 0.04 1.70 6.95 -2.39 -0.02 1.68 16 38 H 0.06 1.82 5.98 -2.39 -0.01 1.80 16 39 H 0.05 1.60 8.10 -2.39 -0.02 1.58 16 40 H 0.08 2.14 5.01 -2.39 -0.01 2.13 16 Total: -1.00 -63.06 283.22 3.30 -59.76 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 0.93 Total: 14.60 kcal Atomic # 6 Polarization: -44.82 SS G_CDS: 3.79 Total: -41.03 kcal Atomic # 7 Polarization: -77.17 SS G_CDS: -3.13 Total: -80.29 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 1.71 Total: 46.96 kcal Total: -63.06 3.30 -59.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259472561.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.088 kcal (2) G-P(sol) polarization free energy of solvation -63.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds