Wall clock time and date at job start Mon Mar 30 2020 03:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47387 * 2 1 4 4 C 1.53002 * 109.46804 * 240.00365 * 2 1 3 5 5 C 1.52997 * 109.46829 * 180.02562 * 4 2 1 6 6 C 1.53004 * 109.47135 * 59.99864 * 5 4 2 7 7 H 1.09005 * 109.47066 * 180.02562 * 6 5 4 8 8 N 1.46903 * 109.47096 * 60.00322 * 6 5 4 9 9 C 1.46899 * 111.00286 * 31.36808 * 8 6 5 10 10 C 1.46898 * 111.00162 * 155.32445 * 8 6 5 11 11 C 1.53000 * 109.47004 * 299.99791 * 6 5 4 12 12 H 1.08994 * 109.47219 * 299.99641 * 11 6 5 13 13 C 1.53002 * 109.46647 * 179.97438 * 11 6 5 14 14 C 1.50700 * 109.46983 * 171.13977 * 13 11 6 15 15 H 1.08004 * 120.00032 * 0.02562 * 14 13 11 16 16 C 1.37874 * 120.00349 * 180.02562 * 14 13 11 17 17 N 1.31519 * 120.00207 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 119.99950 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.46820 * 90.00281 * 18 16 14 20 20 H 1.48494 * 109.47413 * 210.00188 * 18 16 14 21 21 H 1.48500 * 109.47190 * 330.00550 * 18 16 14 22 22 C 1.52994 * 109.46987 * 120.00258 * 2 1 3 23 23 H 1.09000 * 109.47463 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46859 * 300.00236 * 1 2 3 25 25 H 1.09008 * 109.46581 * 59.99571 * 1 2 3 26 26 H 1.08998 * 109.47457 * 60.00071 * 4 2 1 27 27 H 1.09004 * 109.47274 * 299.99955 * 4 2 1 28 28 H 1.08994 * 109.47531 * 299.99953 * 5 4 2 29 29 H 1.09004 * 109.47343 * 179.97438 * 5 4 2 30 30 H 1.08999 * 109.47375 * 175.45270 * 9 8 6 31 31 H 1.09000 * 109.47008 * 295.45290 * 9 8 6 32 32 H 1.08996 * 109.47116 * 55.44650 * 9 8 6 33 33 H 1.08993 * 109.47218 * 287.48299 * 10 8 6 34 34 H 1.09001 * 109.46995 * 47.47795 * 10 8 6 35 35 H 1.08995 * 109.47399 * 167.47625 * 10 8 6 36 36 H 1.08997 * 109.47248 * 291.13419 * 13 11 6 37 37 H 1.09001 * 109.47288 * 51.14126 * 13 11 6 38 38 H 0.96996 * 119.99936 * 179.97438 * 17 16 14 39 39 H 1.08996 * 109.47482 * 300.00163 * 22 2 1 40 40 H 1.09004 * 109.47064 * 60.00061 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5699 -0.7218 -1.2490 6 6 4.0794 -1.4434 0.0002 7 1 5.1695 -1.4434 0.0007 8 7 3.5893 -2.8283 -0.0002 9 6 3.4448 -3.3353 -1.3713 10 6 4.4683 -3.6981 0.7928 11 6 3.5695 -0.7222 1.2495 12 1 3.9332 0.3052 1.2498 13 6 4.0785 -1.4443 2.4987 14 6 3.7630 -0.6191 3.7195 15 1 3.2503 0.3258 3.6149 16 6 4.1288 -1.0701 4.9700 17 7 3.8530 -0.3501 6.0355 18 14 5.0149 -2.7046 5.1510 19 1 6.4814 -2.4837 5.0746 20 1 4.6733 -3.3103 6.4631 21 1 4.5946 -3.6191 4.0591 22 6 2.0400 -0.7213 1.2492 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5140 -0.8900 26 1 1.6767 -0.2073 -2.1393 27 1 1.6766 -1.7489 -1.2494 28 1 3.9337 0.3057 -1.2487 29 1 3.9333 -1.2359 -2.1388 30 1 3.1585 -4.3866 -1.3417 31 1 2.6758 -2.7637 -1.8909 32 1 4.3930 -3.2316 -1.8988 33 1 5.4013 -3.8606 0.2534 34 1 4.6805 -3.2237 1.7510 35 1 3.9753 -4.6552 0.9626 36 1 3.5909 -2.4157 2.5809 37 1 5.1569 -1.5842 2.4234 38 1 4.1100 -0.6676 6.9152 39 1 1.6767 -0.2076 2.1392 40 1 1.6766 -1.7490 1.2491 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259843371.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:01 Heat of formation + Delta-G solvation = -4.870433 kcal Electronic energy + Delta-G solvation = -17067.007552 eV Core-core repulsion = 14688.371720 eV Total energy + Delta-G solvation = -2378.635831 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.60844 -35.38191 -33.67583 -31.59489 -30.94130 -27.39368 -26.99220 -25.87887 -23.23789 -22.69579 -20.43769 -19.64109 -18.71353 -16.71076 -15.38576 -15.01049 -14.66023 -14.15706 -13.88190 -13.64165 -13.40846 -12.61221 -12.44841 -12.37957 -12.08406 -11.84857 -11.79079 -11.43238 -11.42267 -10.98667 -10.88490 -10.71192 -10.44896 -10.38059 -10.10923 -9.76436 -9.58121 -9.49372 -9.01678 -8.77059 -8.45299 -7.79218 -5.96801 -3.92465 3.33572 3.41574 3.43702 4.37263 4.50719 5.11529 5.20332 5.21216 5.37731 5.47818 5.52614 5.62564 5.68589 5.76233 5.85614 5.93693 5.96484 6.00908 6.06730 6.09852 6.18076 6.26798 6.34547 6.35991 6.46732 6.49594 6.59478 6.72797 6.81193 7.04724 7.15016 7.29972 7.34987 7.46103 7.53239 7.69594 7.91389 8.64296 9.09798 9.66724 11.16976 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.027100 B = 0.010021 C = 0.008014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.969215 B = 2793.383193 C = 3493.233818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.092 4.092 3 H 0.059 0.941 4 C -0.111 4.111 5 C -0.122 4.122 6 C 0.085 3.915 7 H 0.037 0.963 8 N -0.527 5.527 9 C 0.013 3.987 10 C -0.001 4.001 11 C -0.059 4.059 12 H 0.060 0.940 13 C -0.012 4.012 14 C -0.510 4.510 15 H 0.072 0.928 16 C 0.064 3.936 17 N -0.907 5.907 18 Si 0.874 3.126 19 H -0.280 1.280 20 H -0.289 1.289 21 H -0.263 1.263 22 C -0.089 4.089 23 H 0.051 0.949 24 H 0.053 0.947 25 H 0.043 0.957 26 H 0.047 0.953 27 H 0.075 0.925 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.079 0.921 32 H 0.016 0.984 33 H 0.014 0.986 34 H 0.101 0.899 35 H 0.059 0.941 36 H 0.033 0.967 37 H 0.004 0.996 38 H 0.261 0.739 39 H 0.065 0.935 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.032 -3.689 -14.873 15.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.111 4.111 3 H 0.077 0.923 4 C -0.148 4.148 5 C -0.159 4.159 6 C -0.023 4.023 7 H 0.055 0.945 8 N -0.251 5.251 9 C -0.135 4.135 10 C -0.149 4.149 11 C -0.078 4.078 12 H 0.078 0.922 13 C -0.049 4.049 14 C -0.548 4.548 15 H 0.090 0.910 16 C -0.136 4.136 17 N -0.547 5.547 18 Si 0.702 3.298 19 H -0.206 1.206 20 H -0.216 1.216 21 H -0.188 1.188 22 C -0.127 4.127 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.093 0.907 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.097 0.903 32 H 0.035 0.965 33 H 0.032 0.968 34 H 0.119 0.881 35 H 0.078 0.922 36 H 0.051 0.949 37 H 0.022 0.978 38 H 0.070 0.930 39 H 0.084 0.916 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.479 -3.692 -14.462 15.130 hybrid contribution 1.440 -0.864 -0.116 1.683 sum -1.039 -4.556 -14.578 15.309 Atomic orbital electron populations 1.21795 0.96147 1.01332 1.00747 1.21160 0.94648 0.99200 0.96058 0.92251 1.21698 0.94710 1.01311 0.97084 1.21780 0.96825 1.00300 0.97024 1.21854 0.96221 0.87950 0.96284 0.94505 1.61951 1.49737 1.01955 1.11427 1.22671 1.00044 1.00154 0.90611 1.23007 0.93755 0.97659 1.00432 1.20980 0.95696 0.97994 0.93107 0.92163 1.19828 0.94671 0.96960 0.93413 1.21210 1.37356 1.06638 0.89576 0.91017 1.25023 0.95718 0.96853 0.96017 1.69919 1.48150 1.38312 0.98279 0.86877 0.80181 0.85209 0.77537 1.20599 1.21561 1.18765 1.21397 0.95102 1.00602 0.95578 0.92967 0.92826 0.93804 0.93473 0.90667 0.91822 0.92600 0.92489 0.90300 0.96536 0.96774 0.88088 0.92237 0.94931 0.97822 0.92954 0.91638 0.91499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.19 37.16 0.34 -1.60 16 2 C -0.09 -1.41 2.72 -90.62 -0.25 -1.65 16 3 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 4 C -0.11 -1.50 4.55 -26.73 -0.12 -1.62 16 5 C -0.12 -1.70 4.87 -26.73 -0.13 -1.83 16 6 C 0.08 1.43 2.20 -67.71 -0.15 1.28 16 7 H 0.04 0.64 7.86 -51.93 -0.41 0.23 16 8 N -0.53 -8.57 3.63 -243.18 -0.88 -9.45 16 9 C 0.01 0.17 7.96 60.06 0.48 0.65 16 10 C 0.00 -0.01 8.86 60.06 0.53 0.52 16 11 C -0.06 -1.17 1.93 -90.65 -0.17 -1.34 16 12 H 0.06 1.25 8.12 -51.93 -0.42 0.83 16 13 C -0.01 -0.28 1.78 -27.88 -0.05 -0.33 16 14 C -0.51 -14.39 8.99 -34.44 -0.31 -14.70 16 15 H 0.07 2.19 7.57 -52.48 -0.40 1.79 16 16 C 0.06 1.87 5.47 -17.82 -0.10 1.78 16 17 N -0.91 -28.17 13.96 55.43 0.77 -27.40 16 18 Si 0.87 21.79 27.47 -169.99 -4.67 17.12 16 19 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 21 H -0.26 -6.20 6.33 56.52 0.36 -5.84 16 22 C -0.09 -1.68 4.16 -26.76 -0.11 -1.79 16 23 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 24 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.04 0.52 8.14 -51.92 -0.42 0.10 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 1.04 5.52 -51.93 -0.29 0.75 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.06 0.70 6.40 -51.93 -0.33 0.37 16 30 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 31 H 0.08 0.96 4.46 -51.93 -0.23 0.73 16 32 H 0.02 0.21 7.72 -51.93 -0.40 -0.20 16 33 H 0.01 0.21 8.09 -51.93 -0.42 -0.21 16 34 H 0.10 1.97 3.59 -51.93 -0.19 1.78 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.03 0.79 5.24 -51.93 -0.27 0.51 16 37 H 0.00 0.09 6.90 -51.93 -0.36 -0.27 16 38 H 0.26 7.62 8.31 -40.82 -0.34 7.29 16 39 H 0.06 1.40 7.22 -51.93 -0.38 1.02 16 40 H 0.07 1.31 7.60 -51.93 -0.39 0.91 16 LS Contribution 287.97 15.07 4.34 4.34 Total: -1.00 -29.56 287.97 -7.52 -37.08 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -7.04 Total: -1.04 kcal Atomic # 6 Polarization: -20.61 SS G_CDS: -0.04 Total: -20.65 kcal Atomic # 7 Polarization: -36.74 SS G_CDS: -0.11 Total: -36.85 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.67 Total: 17.12 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -29.56 -7.52 -37.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259843371.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.207 kcal (2) G-P(sol) polarization free energy of solvation -29.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds