Wall clock time and date at job start Mon Mar 30 2020 03:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47387 * 2 1 4 4 C 1.53002 * 109.46804 * 240.00365 * 2 1 3 5 5 C 1.52997 * 109.46829 * 180.02562 * 4 2 1 6 6 C 1.53004 * 109.47135 * 59.99864 * 5 4 2 7 7 H 1.09005 * 109.47066 * 180.02562 * 6 5 4 8 8 N 1.46903 * 109.47096 * 60.00322 * 6 5 4 9 9 C 1.46899 * 111.00286 * 31.36808 * 8 6 5 10 10 C 1.46898 * 111.00162 * 155.32445 * 8 6 5 11 11 C 1.53000 * 109.47004 * 299.99791 * 6 5 4 12 12 H 1.08994 * 109.47219 * 299.99641 * 11 6 5 13 13 C 1.53002 * 109.46647 * 179.97438 * 11 6 5 14 14 C 1.50700 * 109.46983 * 171.13977 * 13 11 6 15 15 H 1.08004 * 120.00032 * 0.02562 * 14 13 11 16 16 C 1.37874 * 120.00349 * 180.02562 * 14 13 11 17 17 N 1.31519 * 120.00207 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 119.99950 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.46820 * 90.00281 * 18 16 14 20 20 H 1.48494 * 109.47413 * 210.00188 * 18 16 14 21 21 H 1.48500 * 109.47190 * 330.00550 * 18 16 14 22 22 C 1.52994 * 109.46987 * 120.00258 * 2 1 3 23 23 H 1.09000 * 109.47463 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46859 * 300.00236 * 1 2 3 25 25 H 1.09008 * 109.46581 * 59.99571 * 1 2 3 26 26 H 1.08998 * 109.47457 * 60.00071 * 4 2 1 27 27 H 1.09004 * 109.47274 * 299.99955 * 4 2 1 28 28 H 1.08994 * 109.47531 * 299.99953 * 5 4 2 29 29 H 1.09004 * 109.47343 * 179.97438 * 5 4 2 30 30 H 1.08999 * 109.47375 * 175.45270 * 9 8 6 31 31 H 1.09000 * 109.47008 * 295.45290 * 9 8 6 32 32 H 1.08996 * 109.47116 * 55.44650 * 9 8 6 33 33 H 1.08993 * 109.47218 * 287.48299 * 10 8 6 34 34 H 1.09001 * 109.46995 * 47.47795 * 10 8 6 35 35 H 1.08995 * 109.47399 * 167.47625 * 10 8 6 36 36 H 1.08997 * 109.47248 * 291.13419 * 13 11 6 37 37 H 1.09001 * 109.47288 * 51.14126 * 13 11 6 38 38 H 0.96996 * 119.99936 * 179.97438 * 17 16 14 39 39 H 1.08996 * 109.47482 * 300.00163 * 22 2 1 40 40 H 1.09004 * 109.47064 * 60.00061 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5699 -0.7218 -1.2490 6 6 4.0794 -1.4434 0.0002 7 1 5.1695 -1.4434 0.0007 8 7 3.5893 -2.8283 -0.0002 9 6 3.4448 -3.3353 -1.3713 10 6 4.4683 -3.6981 0.7928 11 6 3.5695 -0.7222 1.2495 12 1 3.9332 0.3052 1.2498 13 6 4.0785 -1.4443 2.4987 14 6 3.7630 -0.6191 3.7195 15 1 3.2503 0.3258 3.6149 16 6 4.1288 -1.0701 4.9700 17 7 3.8530 -0.3501 6.0355 18 14 5.0149 -2.7046 5.1510 19 1 6.4814 -2.4837 5.0746 20 1 4.6733 -3.3103 6.4631 21 1 4.5946 -3.6191 4.0591 22 6 2.0400 -0.7213 1.2492 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5140 -0.8900 26 1 1.6767 -0.2073 -2.1393 27 1 1.6766 -1.7489 -1.2494 28 1 3.9337 0.3057 -1.2487 29 1 3.9333 -1.2359 -2.1388 30 1 3.1585 -4.3866 -1.3417 31 1 2.6758 -2.7637 -1.8909 32 1 4.3930 -3.2316 -1.8988 33 1 5.4013 -3.8606 0.2534 34 1 4.6805 -3.2237 1.7510 35 1 3.9753 -4.6552 0.9626 36 1 3.5909 -2.4157 2.5809 37 1 5.1569 -1.5842 2.4234 38 1 4.1100 -0.6676 6.9152 39 1 1.6767 -0.2076 2.1392 40 1 1.6766 -1.7490 1.2491 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259843371.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:01 Heat of formation + Delta-G solvation = -22.742170 kcal Electronic energy + Delta-G solvation = -17067.782529 eV Core-core repulsion = 14688.371720 eV Total energy + Delta-G solvation = -2379.410808 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.93462 -36.61943 -35.56739 -33.54727 -32.13978 -29.20567 -28.18171 -27.11534 -24.96656 -23.97453 -21.90819 -21.11101 -20.11901 -18.78762 -16.70160 -16.43878 -16.21298 -15.79417 -15.18732 -14.89306 -14.87848 -14.47893 -13.85261 -13.80262 -13.49762 -13.33490 -13.14076 -12.72128 -12.66123 -12.56323 -12.27444 -12.20003 -12.05904 -11.72651 -11.69206 -11.58147 -11.08359 -11.00478 -10.70278 -10.61022 -10.51353 -9.02895 -8.25033 -6.26057 1.33520 1.36069 1.47755 2.37695 3.10463 3.15911 3.90981 3.95740 4.01415 4.30774 4.38824 4.43097 4.50532 4.57435 4.60645 4.69206 4.75478 4.78248 4.89355 4.91106 5.00482 5.03864 5.09612 5.11933 5.16707 5.18456 5.23204 5.36180 5.43100 5.51755 5.59369 5.64628 5.68516 5.80567 5.86246 6.28213 6.36685 6.38381 6.81487 7.36899 8.92112 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.027100 B = 0.010021 C = 0.008014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.969215 B = 2793.383193 C = 3493.233818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.090 4.090 3 H 0.053 0.947 4 C -0.104 4.104 5 C -0.117 4.117 6 C 0.091 3.909 7 H 0.030 0.970 8 N -0.541 5.541 9 C 0.014 3.986 10 C 0.001 3.999 11 C -0.060 4.060 12 H 0.041 0.959 13 C 0.000 4.000 14 C -0.516 4.516 15 H 0.029 0.971 16 C 0.000 4.000 17 N -0.956 5.956 18 Si 0.943 3.057 19 H -0.270 1.270 20 H -0.287 1.287 21 H -0.240 1.240 22 C -0.080 4.080 23 H 0.055 0.945 24 H 0.039 0.961 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.064 0.936 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.092 0.908 32 H 0.026 0.974 33 H 0.028 0.972 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.033 0.967 37 H 0.004 0.996 38 H 0.263 0.737 39 H 0.023 0.977 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.823 -5.519 -17.831 18.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.108 4.108 3 H 0.072 0.928 4 C -0.141 4.141 5 C -0.155 4.155 6 C -0.017 4.017 7 H 0.048 0.952 8 N -0.266 5.266 9 C -0.133 4.133 10 C -0.147 4.147 11 C -0.079 4.079 12 H 0.060 0.940 13 C -0.037 4.037 14 C -0.554 4.554 15 H 0.047 0.953 16 C -0.195 4.195 17 N -0.597 5.597 18 Si 0.767 3.233 19 H -0.196 1.196 20 H -0.213 1.213 21 H -0.164 1.164 22 C -0.118 4.118 23 H 0.074 0.926 24 H 0.059 0.941 25 H 0.088 0.912 26 H 0.094 0.906 27 H 0.097 0.903 28 H 0.083 0.917 29 H 0.100 0.900 30 H 0.086 0.914 31 H 0.110 0.890 32 H 0.045 0.955 33 H 0.047 0.953 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.051 0.949 37 H 0.022 0.978 38 H 0.072 0.928 39 H 0.042 0.958 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.275 -5.524 -17.450 18.444 hybrid contribution 1.334 -0.210 0.835 1.588 sum -0.941 -5.733 -16.615 17.601 Atomic orbital electron populations 1.21759 0.94706 1.01794 1.01406 1.21122 0.95903 0.98593 0.95229 0.92832 1.21660 0.94241 1.01462 0.96700 1.21775 0.97140 1.00294 0.96274 1.21682 0.95770 0.88615 0.95680 0.95153 1.61882 1.49622 1.01486 1.13582 1.22738 1.01001 1.00939 0.88643 1.22903 0.94823 0.97783 0.99229 1.20916 0.96374 0.97045 0.93554 0.94045 1.19726 0.94591 0.96332 0.93047 1.21550 1.36301 1.05687 0.91846 0.95293 1.25989 0.96801 1.01181 0.95546 1.70084 1.50003 1.40690 0.98965 0.85774 0.79047 0.80383 0.78119 1.19573 1.21291 1.16361 1.21251 0.94412 1.00082 0.96051 0.92588 0.94146 0.91216 0.90640 0.90348 0.91692 0.89968 0.91369 0.89007 0.95502 0.95309 0.91241 0.91155 0.94893 0.97802 0.92830 0.95829 0.92133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.57 9.19 71.98 0.66 -2.91 16 2 C -0.09 -2.64 2.72 -10.79 -0.03 -2.67 16 3 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 4 C -0.10 -2.43 4.55 30.59 0.14 -2.29 16 5 C -0.12 -2.88 4.87 30.59 0.15 -2.73 16 6 C 0.09 2.89 2.20 44.92 0.10 2.99 16 7 H 0.03 1.01 7.86 -2.38 -0.02 0.99 16 8 N -0.54 -16.19 3.63 -923.29 -3.35 -19.54 16 9 C 0.01 0.31 7.96 127.69 1.02 1.33 16 10 C 0.00 0.02 8.86 127.69 1.13 1.15 16 11 C -0.06 -2.41 1.93 -10.81 -0.02 -2.44 16 12 H 0.04 1.79 8.12 -2.39 -0.02 1.77 16 13 C 0.00 0.00 1.78 29.85 0.05 0.05 16 14 C -0.52 -30.52 8.99 25.60 0.23 -30.29 16 15 H 0.03 1.90 7.57 -2.91 -0.02 1.88 16 16 C 0.00 0.03 5.47 84.65 0.46 0.49 16 17 N -0.96 -61.77 13.96 21.45 0.30 -61.47 16 18 Si 0.94 45.48 27.47 68.60 1.88 47.36 16 19 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 20 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 21 H -0.24 -10.62 6.33 99.48 0.63 -9.99 16 22 C -0.08 -3.09 4.16 30.57 0.13 -2.97 16 23 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 26 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.08 1.83 5.52 -2.38 -0.01 1.82 16 28 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.08 1.65 6.40 -2.38 -0.02 1.64 16 30 H 0.07 1.37 8.10 -2.39 -0.02 1.35 16 31 H 0.09 1.79 4.46 -2.39 -0.01 1.78 16 32 H 0.03 0.55 7.72 -2.39 -0.02 0.53 16 33 H 0.03 0.79 8.09 -2.39 -0.02 0.77 16 34 H 0.07 2.60 3.59 -2.39 -0.01 2.59 16 35 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.03 1.59 5.24 -2.39 -0.01 1.58 16 37 H 0.00 0.18 6.90 -2.39 -0.02 0.17 16 38 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 39 H 0.02 1.06 7.22 -2.39 -0.02 1.05 16 40 H 0.06 2.38 7.60 -2.38 -0.02 2.36 16 Total: -1.00 -66.66 287.97 3.76 -62.90 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: 0.91 Total: 11.03 kcal Atomic # 6 Polarization: -44.30 SS G_CDS: 4.02 Total: -40.28 kcal Atomic # 7 Polarization: -77.96 SS G_CDS: -3.05 Total: -81.01 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 1.88 Total: 47.36 kcal Total: -66.66 3.76 -62.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259843371.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.160 kcal (2) G-P(sol) polarization free energy of solvation -66.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds