Wall clock time and date at job start Mon Mar 30 2020 02:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47123 * 2 1 4 4 N 1.46908 * 109.46630 * 119.99536 * 2 1 3 5 5 C 1.47940 * 111.00013 * 298.95337 * 4 2 1 6 6 C 1.53922 * 113.32887 * 192.17651 * 5 4 2 7 7 C 1.50534 * 112.93383 * 317.75636 * 6 5 4 8 8 C 1.54519 * 108.85032 * 91.76120 * 7 6 5 9 9 C 1.45873 * 111.68317 * 282.73682 * 8 7 6 10 10 H 1.09001 * 108.85108 * 300.78654 * 9 8 7 11 11 C 1.53000 * 108.85011 * 182.31405 * 9 8 7 12 12 C 1.50703 * 109.46912 * 65.00153 * 11 9 8 13 13 H 1.07996 * 119.99751 * 0.02562 * 12 11 9 14 14 C 1.37877 * 120.00001 * 180.02562 * 12 11 9 15 15 N 1.31517 * 120.00094 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99955 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47116 * 59.99536 * 16 14 12 18 18 H 1.48500 * 109.46585 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.46730 * 299.99515 * 16 14 12 20 20 C 1.44302 * 110.99793 * 171.52750 * 4 2 1 21 21 H 1.09003 * 109.47154 * 60.00138 * 1 2 3 22 22 H 1.08999 * 109.47769 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47772 * 300.00461 * 1 2 3 24 24 H 1.09004 * 109.47323 * 239.99255 * 2 1 3 25 25 H 1.09005 * 109.47130 * 179.97438 * 3 2 1 26 26 H 1.08997 * 109.46800 * 299.99526 * 3 2 1 27 27 H 1.08997 * 109.47461 * 59.99832 * 3 2 1 28 28 H 1.09000 * 108.71049 * 71.18845 * 5 4 2 29 29 H 1.08995 * 108.71647 * 313.17169 * 5 4 2 30 30 H 1.08996 * 108.78847 * 196.86661 * 6 5 4 31 31 H 1.08999 * 108.78650 * 78.65209 * 6 5 4 32 32 H 1.08996 * 109.57679 * 331.95533 * 7 6 5 33 33 H 1.08998 * 109.67662 * 211.62957 * 7 6 5 34 34 H 1.09000 * 109.03659 * 162.17098 * 8 7 6 35 35 H 1.09000 * 108.98256 * 43.26687 * 8 7 6 36 36 H 1.09002 * 109.47398 * 185.00231 * 11 9 8 37 37 H 1.09001 * 109.47194 * 305.00412 * 11 9 8 38 38 H 0.97000 * 120.00333 * 179.97438 * 15 14 12 39 39 H 1.09002 * 109.68938 * 101.64203 * 20 4 2 40 40 H 1.09002 * 109.69216 * 341.06488 * 20 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1996 5 6 1.5658 -0.0071 2.4297 6 6 2.2807 -0.4995 3.7008 7 6 2.4431 -1.9955 3.7402 8 6 3.8068 -2.3663 3.1154 9 6 3.7683 -2.2995 1.6587 10 1 3.0058 -2.9881 1.2946 11 6 5.1282 -2.7329 1.1077 12 6 5.3664 -4.1831 1.4415 13 1 4.6220 -4.7399 1.9911 14 6 6.5346 -4.7988 1.0451 15 7 7.4409 -4.1208 0.3753 16 14 6.8294 -6.5966 1.4581 17 1 5.7608 -7.4267 0.8465 18 1 8.1495 -7.0171 0.9235 19 1 6.8122 -6.7750 2.9322 20 6 3.4482 -0.8861 1.1380 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3635 0.5139 0.8899 24 1 1.8934 -0.5140 -0.8899 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9562 -0.8900 27 1 1.6766 1.9563 0.8899 28 1 0.4944 -0.1700 2.5457 29 1 1.7444 1.0625 2.3202 30 1 1.7047 -0.1858 4.5713 31 1 3.2668 -0.0377 3.7502 32 1 1.6410 -2.4651 3.1709 33 1 2.4087 -2.3413 4.7733 34 1 4.0730 -3.3791 3.4179 35 1 4.5650 -1.6748 3.4830 36 1 5.1403 -2.6023 0.0256 37 1 5.9129 -2.1233 1.5560 38 1 8.2629 -4.5539 0.0968 39 1 3.9466 -0.1435 1.7612 40 1 3.7879 -0.7887 0.1069 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260379096.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:52 Heat of formation + Delta-G solvation = -20.308089 kcal Electronic energy + Delta-G solvation = -16592.524939 eV Core-core repulsion = 14213.219680 eV Total energy + Delta-G solvation = -2379.305258 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.29268 -35.91791 -33.44451 -31.81474 -30.83208 -27.66778 -27.12830 -25.13653 -24.44114 -22.21331 -20.67082 -19.08064 -18.57489 -16.39497 -15.86845 -15.29724 -14.50625 -14.38887 -13.79266 -13.59130 -13.29123 -12.98061 -12.77733 -12.28145 -12.04020 -11.86040 -11.72292 -11.30100 -11.16813 -11.03892 -10.71809 -10.69621 -10.54713 -10.46871 -10.23972 -10.02600 -9.74175 -9.44779 -8.93842 -8.89077 -8.27217 -7.69587 -5.92395 -3.93155 3.37858 3.41917 3.44742 4.20511 4.52949 5.00121 5.11385 5.17039 5.32261 5.39866 5.43093 5.55219 5.60996 5.66340 5.74309 5.87864 5.90076 5.94255 6.03461 6.06940 6.10856 6.24043 6.30392 6.35861 6.41944 6.46161 6.57472 6.82524 6.98812 7.16991 7.26884 7.40948 7.55616 7.71637 7.79926 7.98647 8.09797 8.53362 9.13345 9.69851 11.19055 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.035366 B = 0.006808 C = 0.006244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.538401 B = 4111.567196 C = 4483.518050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.078 3.922 3 C -0.187 4.187 4 N -0.538 5.538 5 C 0.060 3.940 6 C -0.117 4.117 7 C -0.115 4.115 8 C -0.098 4.098 9 C -0.075 4.075 10 H 0.064 0.936 11 C 0.026 3.974 12 C -0.512 4.512 13 H 0.056 0.944 14 C 0.055 3.945 15 N -0.898 5.898 16 Si 0.889 3.111 17 H -0.277 1.277 18 H -0.289 1.289 19 H -0.278 1.278 20 C 0.070 3.930 21 H 0.052 0.948 22 H 0.062 0.938 23 H 0.051 0.949 24 H 0.082 0.918 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.031 0.969 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.048 0.952 34 H 0.070 0.930 35 H 0.044 0.956 36 H 0.013 0.987 37 H 0.012 0.988 38 H 0.259 0.741 39 H 0.032 0.968 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.906 9.477 2.514 15.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.031 4.031 3 C -0.246 4.246 4 N -0.262 5.262 5 C -0.067 4.067 6 C -0.155 4.155 7 C -0.152 4.152 8 C -0.135 4.135 9 C -0.094 4.094 10 H 0.082 0.918 11 C -0.011 4.011 12 C -0.550 4.550 13 H 0.074 0.926 14 C -0.145 4.145 15 N -0.538 5.538 16 Si 0.717 3.283 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.203 1.203 20 C -0.058 4.058 21 H 0.071 0.929 22 H 0.081 0.919 23 H 0.070 0.930 24 H 0.100 0.900 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.049 0.951 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.063 0.937 36 H 0.031 0.969 37 H 0.030 0.970 38 H 0.069 0.931 39 H 0.050 0.950 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.920 9.016 2.450 15.145 hybrid contribution 0.711 -0.128 0.156 0.739 sum -11.209 8.887 2.606 14.540 Atomic orbital electron populations 1.21836 0.94943 1.02214 1.00965 1.21760 0.95302 0.92127 0.93869 1.22502 1.01671 0.98683 1.01703 1.60993 1.14354 1.50012 1.00826 1.22404 0.99270 0.95413 0.89600 1.21381 1.00267 0.97799 0.96012 1.21361 0.99669 0.94606 0.99612 1.20544 0.94433 1.02117 0.96447 1.20082 1.00314 0.93997 0.95055 0.91788 1.19208 0.90282 0.95831 0.95819 1.21248 1.02588 0.96156 1.34998 0.92609 1.25017 0.96322 0.97789 0.95395 1.69958 1.08561 1.36375 1.38908 0.86712 0.77238 0.85714 0.78663 1.20304 1.21429 1.20319 1.21960 0.85513 0.98086 1.00228 0.92864 0.91900 0.92979 0.89976 0.92518 0.92544 0.92500 0.91761 0.95138 0.92576 0.92541 0.91415 0.93321 0.91172 0.93729 0.96890 0.96989 0.93119 0.94954 0.91948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 8.99 37.16 0.33 -1.26 16 2 C 0.08 1.03 2.75 -67.71 -0.19 0.85 16 3 C -0.19 -2.23 8.67 37.16 0.32 -1.91 16 4 N -0.54 -8.27 3.96 -226.65 -0.90 -9.17 16 5 C 0.06 0.82 4.58 -2.77 -0.01 0.80 16 6 C -0.12 -1.63 5.28 -27.48 -0.14 -1.77 16 7 C -0.11 -1.82 5.63 -27.17 -0.15 -1.97 16 8 C -0.10 -1.90 4.45 -29.31 -0.13 -2.03 16 9 C -0.08 -1.58 1.79 -93.48 -0.17 -1.75 16 10 H 0.06 1.43 8.07 -51.93 -0.42 1.01 16 11 C 0.03 0.68 4.35 -27.88 -0.12 0.56 16 12 C -0.51 -14.49 8.30 -34.44 -0.29 -14.78 16 13 H 0.06 1.54 6.96 -52.49 -0.37 1.18 16 14 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 15 N -0.90 -27.32 13.29 55.43 0.74 -26.58 16 16 Si 0.89 21.96 29.54 -169.99 -5.02 16.93 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 20 C 0.07 1.25 3.83 -4.70 -0.02 1.24 16 21 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 22 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.05 0.55 6.68 -51.93 -0.35 0.21 16 24 H 0.08 1.16 7.84 -51.93 -0.41 0.76 16 25 H 0.06 0.74 7.40 -51.93 -0.38 0.35 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.65 6.11 -51.93 -0.32 0.33 16 28 H 0.06 0.81 6.94 -51.93 -0.36 0.45 16 29 H 0.03 0.39 5.63 -51.93 -0.29 0.10 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.83 6.66 -51.93 -0.35 0.49 16 32 H 0.07 1.12 7.78 -51.93 -0.40 0.71 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.07 1.50 6.59 -51.93 -0.34 1.16 16 35 H 0.04 0.87 7.58 -51.93 -0.39 0.48 16 36 H 0.01 0.36 7.93 -51.93 -0.41 -0.06 16 37 H 0.01 0.33 8.13 -51.93 -0.42 -0.10 16 38 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 39 H 0.03 0.58 6.79 -51.93 -0.35 0.22 16 40 H 0.06 1.16 7.00 -51.93 -0.36 0.80 16 LS Contribution 295.29 15.07 4.45 4.45 Total: -1.00 -29.32 295.29 -8.57 -37.89 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -7.18 Total: -3.00 kcal Atomic # 6 Polarization: -19.85 SS G_CDS: -0.66 Total: -20.52 kcal Atomic # 7 Polarization: -35.59 SS G_CDS: -0.16 Total: -35.75 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.32 -8.57 -37.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260379096.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.581 kcal (2) G-P(sol) polarization free energy of solvation -29.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds