Wall clock time and date at job start Mon Mar 30 2020 02:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47123 * 2 1 4 4 N 1.46908 * 109.46630 * 119.99536 * 2 1 3 5 5 C 1.47940 * 111.00013 * 298.95337 * 4 2 1 6 6 C 1.53922 * 113.32887 * 192.17651 * 5 4 2 7 7 C 1.50534 * 112.93383 * 317.75636 * 6 5 4 8 8 C 1.54519 * 108.85032 * 91.76120 * 7 6 5 9 9 C 1.45873 * 111.68317 * 282.73682 * 8 7 6 10 10 H 1.09001 * 108.85108 * 300.78654 * 9 8 7 11 11 C 1.53000 * 108.85011 * 182.31405 * 9 8 7 12 12 C 1.50703 * 109.46912 * 65.00153 * 11 9 8 13 13 H 1.07996 * 119.99751 * 0.02562 * 12 11 9 14 14 C 1.37877 * 120.00001 * 180.02562 * 12 11 9 15 15 N 1.31517 * 120.00094 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99955 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47116 * 59.99536 * 16 14 12 18 18 H 1.48500 * 109.46585 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.46730 * 299.99515 * 16 14 12 20 20 C 1.44302 * 110.99793 * 171.52750 * 4 2 1 21 21 H 1.09003 * 109.47154 * 60.00138 * 1 2 3 22 22 H 1.08999 * 109.47769 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47772 * 300.00461 * 1 2 3 24 24 H 1.09004 * 109.47323 * 239.99255 * 2 1 3 25 25 H 1.09005 * 109.47130 * 179.97438 * 3 2 1 26 26 H 1.08997 * 109.46800 * 299.99526 * 3 2 1 27 27 H 1.08997 * 109.47461 * 59.99832 * 3 2 1 28 28 H 1.09000 * 108.71049 * 71.18845 * 5 4 2 29 29 H 1.08995 * 108.71647 * 313.17169 * 5 4 2 30 30 H 1.08996 * 108.78847 * 196.86661 * 6 5 4 31 31 H 1.08999 * 108.78650 * 78.65209 * 6 5 4 32 32 H 1.08996 * 109.57679 * 331.95533 * 7 6 5 33 33 H 1.08998 * 109.67662 * 211.62957 * 7 6 5 34 34 H 1.09000 * 109.03659 * 162.17098 * 8 7 6 35 35 H 1.09000 * 108.98256 * 43.26687 * 8 7 6 36 36 H 1.09002 * 109.47398 * 185.00231 * 11 9 8 37 37 H 1.09001 * 109.47194 * 305.00412 * 11 9 8 38 38 H 0.97000 * 120.00333 * 179.97438 * 15 14 12 39 39 H 1.09002 * 109.68938 * 101.64203 * 20 4 2 40 40 H 1.09002 * 109.69216 * 341.06488 * 20 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1996 5 6 1.5658 -0.0071 2.4297 6 6 2.2807 -0.4995 3.7008 7 6 2.4431 -1.9955 3.7402 8 6 3.8068 -2.3663 3.1154 9 6 3.7683 -2.2995 1.6587 10 1 3.0058 -2.9881 1.2946 11 6 5.1282 -2.7329 1.1077 12 6 5.3664 -4.1831 1.4415 13 1 4.6220 -4.7399 1.9911 14 6 6.5346 -4.7988 1.0451 15 7 7.4409 -4.1208 0.3753 16 14 6.8294 -6.5966 1.4581 17 1 5.7608 -7.4267 0.8465 18 1 8.1495 -7.0171 0.9235 19 1 6.8122 -6.7750 2.9322 20 6 3.4482 -0.8861 1.1380 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3635 0.5139 0.8899 24 1 1.8934 -0.5140 -0.8899 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9562 -0.8900 27 1 1.6766 1.9563 0.8899 28 1 0.4944 -0.1700 2.5457 29 1 1.7444 1.0625 2.3202 30 1 1.7047 -0.1858 4.5713 31 1 3.2668 -0.0377 3.7502 32 1 1.6410 -2.4651 3.1709 33 1 2.4087 -2.3413 4.7733 34 1 4.0730 -3.3791 3.4179 35 1 4.5650 -1.6748 3.4830 36 1 5.1403 -2.6023 0.0256 37 1 5.9129 -2.1233 1.5560 38 1 8.2629 -4.5539 0.0968 39 1 3.9466 -0.1435 1.7612 40 1 3.7879 -0.7887 0.1069 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260379096.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:51 Heat of formation + Delta-G solvation = -37.196143 kcal Electronic energy + Delta-G solvation = -16593.257260 eV Core-core repulsion = 14213.219680 eV Total energy + Delta-G solvation = -2380.037579 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.60732 -37.35343 -35.19556 -33.63500 -32.02842 -29.45748 -28.09314 -26.73590 -25.86169 -24.01679 -21.90188 -20.71889 -19.82280 -18.50953 -17.08592 -16.70651 -16.40123 -15.71395 -15.09311 -14.91335 -14.61882 -14.37542 -14.17463 -13.96823 -13.42933 -13.14488 -13.04197 -12.87733 -12.72167 -12.46357 -12.35486 -12.24075 -11.99335 -11.72610 -11.67665 -11.52445 -11.27511 -11.14096 -10.85667 -10.72438 -10.51473 -8.92928 -8.16571 -6.25975 1.39284 1.42529 1.50162 2.42223 3.03966 3.16058 3.90620 3.97037 4.09706 4.15591 4.29292 4.32509 4.35812 4.47573 4.58202 4.71748 4.76325 4.79959 4.86082 4.88999 4.94364 5.00732 5.07865 5.18649 5.24243 5.29248 5.34832 5.37150 5.46281 5.48817 5.53917 5.61947 5.68724 5.90517 5.95845 6.29059 6.40143 6.47646 6.89770 7.41990 8.95166 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.035366 B = 0.006808 C = 0.006244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.538401 B = 4111.567196 C = 4483.518050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.073 3.927 3 C -0.180 4.180 4 N -0.549 5.549 5 C 0.059 3.941 6 C -0.116 4.116 7 C -0.103 4.103 8 C -0.096 4.096 9 C -0.061 4.061 10 H 0.049 0.951 11 C 0.032 3.968 12 C -0.529 4.529 13 H 0.059 0.941 14 C -0.002 4.002 15 N -0.936 5.936 16 Si 0.961 3.039 17 H -0.268 1.268 18 H -0.284 1.284 19 H -0.267 1.267 20 C 0.086 3.914 21 H 0.071 0.929 22 H 0.053 0.947 23 H 0.063 0.937 24 H 0.065 0.935 25 H 0.038 0.962 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.082 0.918 29 H 0.043 0.957 30 H 0.087 0.913 31 H 0.046 0.954 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.045 0.955 35 H 0.037 0.963 36 H -0.017 1.017 37 H -0.015 1.015 38 H 0.262 0.738 39 H 0.033 0.967 40 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.829 9.837 3.595 17.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.035 4.035 3 C -0.239 4.239 4 N -0.273 5.273 5 C -0.067 4.067 6 C -0.154 4.154 7 C -0.141 4.141 8 C -0.133 4.133 9 C -0.081 4.081 10 H 0.067 0.933 11 C -0.005 4.005 12 C -0.567 4.567 13 H 0.077 0.923 14 C -0.199 4.199 15 N -0.577 5.577 16 Si 0.785 3.215 17 H -0.193 1.193 18 H -0.209 1.209 19 H -0.192 1.192 20 C -0.043 4.043 21 H 0.089 0.911 22 H 0.072 0.928 23 H 0.082 0.918 24 H 0.083 0.917 25 H 0.057 0.943 26 H 0.092 0.908 27 H 0.085 0.915 28 H 0.100 0.900 29 H 0.062 0.938 30 H 0.105 0.895 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.001 0.999 37 H 0.004 0.996 38 H 0.070 0.930 39 H 0.051 0.949 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -13.867 9.386 3.535 17.114 hybrid contribution 1.317 -0.217 -0.215 1.352 sum -12.550 9.169 3.320 15.893 Atomic orbital electron populations 1.21774 0.92813 1.02126 1.02443 1.21833 0.96894 0.92554 0.92230 1.22429 1.00512 0.97857 1.03074 1.60894 1.12103 1.51655 1.02682 1.22499 1.00058 0.95885 0.88301 1.21386 1.00457 0.95996 0.97570 1.21242 0.96538 0.96256 1.00024 1.20466 0.96979 1.00530 0.95368 1.19902 0.96524 0.95619 0.96029 0.93295 1.19110 0.92620 0.94942 0.93843 1.21630 1.02883 0.97267 1.34910 0.92268 1.25958 0.96020 1.02829 0.95131 1.70100 1.09114 1.38511 1.39997 0.85567 0.77348 0.79643 0.78916 1.19315 1.20897 1.19152 1.21599 0.87754 0.95899 0.99002 0.91058 0.92764 0.91822 0.91697 0.94257 0.90802 0.91458 0.89963 0.93847 0.89482 0.93544 0.91841 0.91552 0.93672 0.94403 0.99882 0.99636 0.92952 0.94894 0.93454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.65 8.99 71.98 0.65 -2.01 16 2 C 0.07 1.84 2.75 44.91 0.12 1.96 16 3 C -0.18 -3.96 8.67 71.98 0.62 -3.34 16 4 N -0.55 -16.30 3.96 -870.98 -3.45 -19.75 16 5 C 0.06 1.43 4.58 86.41 0.40 1.83 16 6 C -0.12 -2.92 5.28 30.11 0.16 -2.76 16 7 C -0.10 -3.08 5.63 30.31 0.17 -2.91 16 8 C -0.10 -3.77 4.45 28.93 0.13 -3.64 16 9 C -0.06 -2.66 1.79 -12.65 -0.02 -2.68 16 10 H 0.05 2.25 8.07 -2.39 -0.02 2.23 16 11 C 0.03 1.77 4.35 29.85 0.13 1.90 16 12 C -0.53 -30.90 8.30 25.60 0.21 -30.69 16 13 H 0.06 3.34 6.96 -2.91 -0.02 3.32 16 14 C 0.00 -0.14 5.46 84.65 0.46 0.33 16 15 N -0.94 -58.59 13.29 21.45 0.28 -58.30 16 16 Si 0.96 45.48 29.54 68.60 2.03 47.51 16 17 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 18 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 19 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 20 C 0.09 3.15 3.83 87.12 0.33 3.48 16 21 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 22 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 23 H 0.06 1.12 6.68 -2.39 -0.02 1.10 16 24 H 0.06 1.84 7.84 -2.39 -0.02 1.82 16 25 H 0.04 0.99 7.40 -2.38 -0.02 0.97 16 26 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.07 1.34 6.11 -2.39 -0.01 1.33 16 28 H 0.08 1.75 6.94 -2.39 -0.02 1.73 16 29 H 0.04 0.97 5.63 -2.39 -0.01 0.95 16 30 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.05 1.27 6.66 -2.39 -0.02 1.26 16 32 H 0.06 1.97 7.78 -2.39 -0.02 1.95 16 33 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.04 1.97 6.59 -2.39 -0.02 1.95 16 35 H 0.04 1.51 7.58 -2.39 -0.02 1.49 16 36 H -0.02 -1.03 7.93 -2.39 -0.02 -1.05 16 37 H -0.01 -0.87 8.13 -2.39 -0.02 -0.89 16 38 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 39 H 0.03 1.19 6.79 -2.39 -0.02 1.17 16 40 H 0.05 1.84 7.00 -2.39 -0.02 1.83 16 Total: -1.00 -64.72 295.29 3.21 -61.51 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: 0.98 Total: 7.56 kcal Atomic # 6 Polarization: -41.89 SS G_CDS: 3.36 Total: -38.53 kcal Atomic # 7 Polarization: -74.89 SS G_CDS: -3.16 Total: -78.06 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -64.72 3.21 -61.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260379096.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.315 kcal (2) G-P(sol) polarization free energy of solvation -64.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds