Wall clock time and date at job start Mon Mar 30 2020 02:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47041 * 2 1 4 4 N 1.46898 * 109.47080 * 239.99739 * 2 1 3 5 5 C 1.44270 * 110.99912 * 66.29006 * 4 2 1 6 6 C 1.54072 * 111.98399 * 219.30674 * 5 4 2 7 7 C 1.54297 * 112.28459 * 318.91645 * 6 5 4 8 8 C 1.50455 * 113.03717 * 318.29843 * 7 6 5 9 9 C 1.54510 * 108.85387 * 92.15314 * 8 7 6 10 10 H 1.09001 * 109.05236 * 43.35658 * 9 8 7 11 11 C 1.52997 * 108.99917 * 162.30197 * 9 8 7 12 12 C 1.50692 * 109.47472 * 297.05588 * 11 9 8 13 13 H 1.08006 * 119.99804 * 359.97438 * 12 11 9 14 14 C 1.37877 * 120.00238 * 180.02562 * 12 11 9 15 15 N 1.31513 * 120.00090 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 120.00232 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.47145 * 89.99529 * 16 14 12 18 18 H 1.48499 * 109.47457 * 210.00202 * 16 14 12 19 19 H 1.48505 * 109.46730 * 330.00017 * 16 14 12 20 20 C 1.45862 * 111.59247 * 282.80878 * 9 8 7 21 21 H 1.09001 * 109.47534 * 174.30620 * 1 2 3 22 22 H 1.09004 * 109.47655 * 294.30859 * 1 2 3 23 23 H 1.09006 * 109.47063 * 54.30647 * 1 2 3 24 24 H 1.09005 * 109.47213 * 119.99602 * 2 1 3 25 25 H 1.09002 * 109.47213 * 299.99565 * 3 2 1 26 26 H 1.08997 * 109.47431 * 59.99526 * 3 2 1 27 27 H 1.09005 * 109.47063 * 179.97438 * 3 2 1 28 28 H 1.08994 * 108.98097 * 339.95356 * 5 4 2 29 29 H 1.09002 * 108.98163 * 98.66108 * 5 4 2 30 30 H 1.08998 * 108.92121 * 198.19268 * 6 5 4 31 31 H 1.08996 * 108.83947 * 79.58589 * 6 5 4 32 32 H 1.09006 * 108.76802 * 197.38048 * 7 6 5 33 33 H 1.09001 * 108.67898 * 79.15677 * 7 6 5 34 34 H 1.09009 * 109.57129 * 332.34590 * 8 7 6 35 35 H 1.09001 * 109.68303 * 212.03111 * 8 7 6 36 36 H 1.09004 * 109.46912 * 57.05762 * 11 9 8 37 37 H 1.08999 * 109.47225 * 177.05411 * 11 9 8 38 38 H 0.97002 * 120.00540 * 179.97438 * 15 14 12 39 39 H 1.08992 * 108.79658 * 300.44051 * 20 9 8 40 40 H 1.08998 * 108.70301 * 182.14694 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0196 -0.6925 -1.1994 5 6 1.6813 0.0414 -2.3945 6 6 1.2590 -0.8926 -3.5448 7 6 2.1441 -2.1536 -3.6295 8 6 3.6053 -1.8625 -3.4202 9 6 3.9380 -2.0307 -1.9207 10 1 3.4526 -2.9324 -1.5474 11 6 5.4526 -2.1760 -1.7599 12 6 5.9149 -3.4256 -2.4637 13 1 5.1999 -4.0537 -2.9743 14 6 7.2505 -3.7678 -2.4549 15 7 7.6540 -4.8587 -3.0687 16 14 8.4871 -2.6819 -1.5711 17 1 8.6189 -3.1282 -0.1609 18 1 9.8056 -2.7814 -2.2472 19 1 8.0198 -1.2727 -1.6027 20 6 3.4836 -0.8865 -1.1384 21 1 -0.3634 -1.0226 -0.1020 22 1 -0.3634 0.4230 0.9366 23 1 -0.3633 0.5996 -0.8347 24 1 1.8933 -0.5138 0.8900 25 1 1.6766 1.9563 -0.8900 26 1 1.6765 1.9564 0.8899 27 1 3.1300 1.4425 0.0005 28 1 0.8604 0.7228 -2.1716 29 1 2.5472 0.6234 -2.7102 30 1 1.3290 -0.3478 -4.4862 31 1 0.2241 -1.1970 -3.3891 32 1 2.0141 -2.6079 -4.6118 33 1 1.8152 -2.8626 -2.8697 34 1 3.8220 -0.8401 -3.7299 35 1 4.2058 -2.5570 -4.0076 36 1 5.9490 -1.3088 -2.1954 37 1 5.7007 -2.2426 -0.7006 38 1 8.5937 -5.0993 -3.0629 39 1 3.9728 0.0122 -1.5139 40 1 3.7750 -1.0360 -0.0988 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260379101.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:54 Heat of formation + Delta-G solvation = -16.318666 kcal Electronic energy + Delta-G solvation = -16653.551987 eV Core-core repulsion = 14274.419723 eV Total energy + Delta-G solvation = -2379.132264 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.52812 -35.86515 -33.42356 -32.01538 -30.90068 -28.15315 -27.15438 -25.55844 -24.35903 -22.06440 -20.47442 -19.23818 -18.57582 -16.72709 -16.19636 -15.20916 -14.38533 -14.24568 -14.03300 -13.77491 -13.46951 -13.07224 -12.56997 -12.40749 -12.15825 -11.98835 -11.86532 -11.66491 -11.30875 -11.12342 -10.95060 -10.72808 -10.59311 -10.33288 -10.08065 -9.80759 -9.67649 -9.46695 -9.31563 -8.97416 -8.47623 -7.98872 -5.98382 -3.94659 3.33300 3.40771 3.44354 4.12932 4.49795 4.87774 5.07628 5.17606 5.27780 5.34157 5.37592 5.48629 5.56150 5.63751 5.73434 5.75216 5.82315 5.87223 5.92128 5.97080 6.11600 6.17571 6.23399 6.28768 6.32689 6.41241 6.65634 6.75744 6.83006 6.96877 7.05082 7.26029 7.36788 7.43779 7.48372 7.61489 7.87665 8.62352 9.08213 9.64802 11.15040 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.034484 B = 0.007403 C = 0.006511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.765827 B = 3781.262208 C = 4299.685564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.074 3.926 3 C -0.186 4.186 4 N -0.523 5.523 5 C 0.054 3.946 6 C -0.107 4.107 7 C -0.107 4.107 8 C -0.104 4.104 9 C -0.071 4.071 10 H 0.068 0.932 11 C -0.009 4.009 12 C -0.509 4.509 13 H 0.075 0.925 14 C 0.064 3.936 15 N -0.905 5.905 16 Si 0.877 3.123 17 H -0.279 1.279 18 H -0.289 1.289 19 H -0.267 1.267 20 C 0.066 3.934 21 H 0.064 0.936 22 H 0.054 0.946 23 H 0.052 0.948 24 H 0.080 0.920 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.037 0.963 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.044 0.956 33 H 0.063 0.937 34 H 0.043 0.957 35 H 0.080 0.920 36 H 0.013 0.987 37 H 0.008 0.992 38 H 0.261 0.739 39 H 0.030 0.970 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.848 11.562 3.871 17.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.034 4.034 3 C -0.244 4.244 4 N -0.246 5.246 5 C -0.074 4.074 6 C -0.145 4.145 7 C -0.145 4.145 8 C -0.141 4.141 9 C -0.090 4.090 10 H 0.086 0.914 11 C -0.047 4.047 12 C -0.547 4.547 13 H 0.093 0.907 14 C -0.136 4.136 15 N -0.545 5.545 16 Si 0.705 3.295 17 H -0.204 1.204 18 H -0.215 1.215 19 H -0.192 1.192 20 C -0.060 4.060 21 H 0.083 0.917 22 H 0.073 0.927 23 H 0.071 0.929 24 H 0.099 0.901 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.082 0.918 34 H 0.062 0.938 35 H 0.099 0.901 36 H 0.031 0.969 37 H 0.027 0.973 38 H 0.071 0.929 39 H 0.048 0.952 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.933 10.991 3.816 17.396 hybrid contribution 1.234 1.318 0.493 1.872 sum -11.699 12.309 4.309 17.519 Atomic orbital electron populations 1.21850 0.94699 1.02427 1.00945 1.21793 0.95428 0.92249 0.93954 1.22537 1.01711 0.98332 1.01868 1.61833 1.14184 1.47494 1.01041 1.21922 0.99573 0.94970 0.90974 1.21934 0.99183 0.96902 0.96465 1.21223 0.95779 0.96980 1.00535 1.21335 0.94806 1.00933 0.97074 1.20021 0.97648 0.96957 0.94395 0.91396 1.19646 0.91335 0.97560 0.96189 1.21142 0.93621 1.06874 1.33103 0.90666 1.25026 0.98441 0.94907 0.95225 1.69914 1.15919 1.24603 1.44062 0.86828 0.80847 0.81858 0.80010 1.20447 1.21530 1.19171 1.21186 0.85612 0.98826 1.00424 0.91741 0.92705 0.92911 0.90143 0.92546 0.92546 0.92500 0.92246 0.94485 0.92983 0.92837 0.93688 0.91834 0.93845 0.90099 0.96903 0.97338 0.92888 0.95181 0.92259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.07 37.15 0.34 -1.14 16 2 C 0.07 0.91 2.85 -67.72 -0.19 0.71 16 3 C -0.19 -2.06 8.64 37.16 0.32 -1.74 16 4 N -0.52 -7.64 4.20 -231.55 -0.97 -8.61 16 5 C 0.05 0.74 3.72 -4.67 -0.02 0.72 16 6 C -0.11 -1.46 6.15 -25.49 -0.16 -1.62 16 7 C -0.11 -1.76 5.42 -27.32 -0.15 -1.91 16 8 C -0.10 -1.99 4.86 -27.21 -0.13 -2.12 16 9 C -0.07 -1.43 1.90 -93.21 -0.18 -1.61 16 10 H 0.07 1.46 7.59 -51.93 -0.39 1.06 16 11 C -0.01 -0.22 3.45 -27.89 -0.10 -0.32 16 12 C -0.51 -14.42 8.68 -34.44 -0.30 -14.72 16 13 H 0.08 2.29 7.32 -52.48 -0.38 1.90 16 14 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 15 N -0.91 -28.09 13.96 55.43 0.77 -27.32 16 16 Si 0.88 21.98 27.47 -169.99 -4.67 17.31 16 17 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 18 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 19 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 20 C 0.07 1.12 3.29 -6.70 -0.02 1.10 16 21 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 22 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.05 0.53 6.53 -51.93 -0.34 0.19 16 24 H 0.08 1.01 7.83 -51.93 -0.41 0.60 16 25 H 0.06 0.61 6.53 -51.93 -0.34 0.27 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.69 7.25 -51.93 -0.38 0.31 16 28 H 0.06 0.71 4.94 -51.93 -0.26 0.45 16 29 H 0.04 0.54 6.51 -51.93 -0.34 0.20 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 1.10 7.38 -51.93 -0.38 0.72 16 34 H 0.04 0.79 7.15 -51.92 -0.37 0.42 16 35 H 0.08 1.78 6.49 -51.93 -0.34 1.44 16 36 H 0.01 0.31 7.20 -51.93 -0.37 -0.06 16 37 H 0.01 0.20 7.52 -51.93 -0.39 -0.19 16 38 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 39 H 0.03 0.52 6.93 -51.93 -0.36 0.16 16 40 H 0.06 1.00 7.55 -51.93 -0.39 0.61 16 LS Contribution 291.73 15.07 4.40 4.40 Total: -1.00 -29.50 291.73 -8.30 -37.80 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -7.14 Total: -2.74 kcal Atomic # 6 Polarization: -20.15 SS G_CDS: -0.68 Total: -20.83 kcal Atomic # 7 Polarization: -35.73 SS G_CDS: -0.20 Total: -35.93 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.67 Total: 17.31 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -29.50 -8.30 -37.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260379101.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.479 kcal (2) G-P(sol) polarization free energy of solvation -29.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds