Wall clock time and date at job start Mon Mar 30 2020 02:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47041 * 2 1 4 4 N 1.46898 * 109.47080 * 239.99739 * 2 1 3 5 5 C 1.44270 * 110.99912 * 66.29006 * 4 2 1 6 6 C 1.54072 * 111.98399 * 219.30674 * 5 4 2 7 7 C 1.54297 * 112.28459 * 318.91645 * 6 5 4 8 8 C 1.50455 * 113.03717 * 318.29843 * 7 6 5 9 9 C 1.54510 * 108.85387 * 92.15314 * 8 7 6 10 10 H 1.09001 * 109.05236 * 43.35658 * 9 8 7 11 11 C 1.52997 * 108.99917 * 162.30197 * 9 8 7 12 12 C 1.50692 * 109.47472 * 297.05588 * 11 9 8 13 13 H 1.08006 * 119.99804 * 359.97438 * 12 11 9 14 14 C 1.37877 * 120.00238 * 180.02562 * 12 11 9 15 15 N 1.31513 * 120.00090 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 120.00232 * 359.97438 * 14 12 11 17 17 H 1.48498 * 109.47145 * 89.99529 * 16 14 12 18 18 H 1.48499 * 109.47457 * 210.00202 * 16 14 12 19 19 H 1.48505 * 109.46730 * 330.00017 * 16 14 12 20 20 C 1.45862 * 111.59247 * 282.80878 * 9 8 7 21 21 H 1.09001 * 109.47534 * 174.30620 * 1 2 3 22 22 H 1.09004 * 109.47655 * 294.30859 * 1 2 3 23 23 H 1.09006 * 109.47063 * 54.30647 * 1 2 3 24 24 H 1.09005 * 109.47213 * 119.99602 * 2 1 3 25 25 H 1.09002 * 109.47213 * 299.99565 * 3 2 1 26 26 H 1.08997 * 109.47431 * 59.99526 * 3 2 1 27 27 H 1.09005 * 109.47063 * 179.97438 * 3 2 1 28 28 H 1.08994 * 108.98097 * 339.95356 * 5 4 2 29 29 H 1.09002 * 108.98163 * 98.66108 * 5 4 2 30 30 H 1.08998 * 108.92121 * 198.19268 * 6 5 4 31 31 H 1.08996 * 108.83947 * 79.58589 * 6 5 4 32 32 H 1.09006 * 108.76802 * 197.38048 * 7 6 5 33 33 H 1.09001 * 108.67898 * 79.15677 * 7 6 5 34 34 H 1.09009 * 109.57129 * 332.34590 * 8 7 6 35 35 H 1.09001 * 109.68303 * 212.03111 * 8 7 6 36 36 H 1.09004 * 109.46912 * 57.05762 * 11 9 8 37 37 H 1.08999 * 109.47225 * 177.05411 * 11 9 8 38 38 H 0.97002 * 120.00540 * 179.97438 * 15 14 12 39 39 H 1.08992 * 108.79658 * 300.44051 * 20 9 8 40 40 H 1.08998 * 108.70301 * 182.14694 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0196 -0.6925 -1.1994 5 6 1.6813 0.0414 -2.3945 6 6 1.2590 -0.8926 -3.5448 7 6 2.1441 -2.1536 -3.6295 8 6 3.6053 -1.8625 -3.4202 9 6 3.9380 -2.0307 -1.9207 10 1 3.4526 -2.9324 -1.5474 11 6 5.4526 -2.1760 -1.7599 12 6 5.9149 -3.4256 -2.4637 13 1 5.1999 -4.0537 -2.9743 14 6 7.2505 -3.7678 -2.4549 15 7 7.6540 -4.8587 -3.0687 16 14 8.4871 -2.6819 -1.5711 17 1 8.6189 -3.1282 -0.1609 18 1 9.8056 -2.7814 -2.2472 19 1 8.0198 -1.2727 -1.6027 20 6 3.4836 -0.8865 -1.1384 21 1 -0.3634 -1.0226 -0.1020 22 1 -0.3634 0.4230 0.9366 23 1 -0.3633 0.5996 -0.8347 24 1 1.8933 -0.5138 0.8900 25 1 1.6766 1.9563 -0.8900 26 1 1.6765 1.9564 0.8899 27 1 3.1300 1.4425 0.0005 28 1 0.8604 0.7228 -2.1716 29 1 2.5472 0.6234 -2.7102 30 1 1.3290 -0.3478 -4.4862 31 1 0.2241 -1.1970 -3.3891 32 1 2.0141 -2.6079 -4.6118 33 1 1.8152 -2.8626 -2.8697 34 1 3.8220 -0.8401 -3.7299 35 1 4.2058 -2.5570 -4.0076 36 1 5.9490 -1.3088 -2.1954 37 1 5.7007 -2.2426 -0.7006 38 1 8.5937 -5.0993 -3.0629 39 1 3.9728 0.0122 -1.5139 40 1 3.7750 -1.0360 -0.0988 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260379101.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:54 Heat of formation + Delta-G solvation = -34.203844 kcal Electronic energy + Delta-G solvation = -16654.327547 eV Core-core repulsion = 14274.419723 eV Total energy + Delta-G solvation = -2379.907824 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.76584 -37.25748 -35.08434 -33.87360 -32.06543 -29.92203 -27.99908 -27.02853 -25.69163 -23.79165 -21.74937 -20.83676 -19.74297 -18.86741 -17.30488 -16.63099 -16.11245 -15.55386 -15.38912 -15.05499 -14.92047 -14.39918 -14.31962 -13.67075 -13.54374 -13.32762 -13.06708 -12.81348 -12.69052 -12.58792 -12.29712 -12.11452 -11.90852 -11.74206 -11.64266 -11.44075 -11.21156 -11.06962 -11.03984 -10.85996 -10.68450 -9.11920 -8.25351 -6.27120 1.34756 1.36400 1.48120 2.37486 2.99947 3.09403 3.86202 3.96816 4.10234 4.19498 4.28850 4.37970 4.42383 4.45325 4.49045 4.69728 4.72671 4.79982 4.81310 4.90345 4.99063 5.02097 5.04215 5.06375 5.13544 5.20688 5.28062 5.38016 5.41362 5.45431 5.45605 5.61817 5.62767 5.74776 5.79823 6.24654 6.38655 6.44476 6.80123 7.35795 8.91434 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.034484 B = 0.007403 C = 0.006511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.765827 B = 3781.262208 C = 4299.685564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.070 3.930 3 C -0.180 4.180 4 N -0.531 5.531 5 C 0.054 3.946 6 C -0.102 4.102 7 C -0.103 4.103 8 C -0.098 4.098 9 C -0.062 4.062 10 H 0.046 0.954 11 C -0.006 4.006 12 C -0.514 4.514 13 H 0.035 0.965 14 C 0.001 3.999 15 N -0.953 5.953 16 Si 0.947 3.053 17 H -0.268 1.268 18 H -0.285 1.285 19 H -0.249 1.249 20 C 0.075 3.925 21 H 0.054 0.946 22 H 0.073 0.927 23 H 0.060 0.940 24 H 0.075 0.925 25 H 0.061 0.939 26 H 0.073 0.927 27 H 0.043 0.957 28 H 0.083 0.917 29 H 0.030 0.970 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.047 0.953 33 H 0.048 0.952 34 H 0.053 0.947 35 H 0.040 0.960 36 H 0.015 0.985 37 H 0.013 0.987 38 H 0.264 0.736 39 H 0.033 0.967 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.923 14.248 5.009 20.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.038 4.038 3 C -0.239 4.239 4 N -0.254 5.254 5 C -0.075 4.075 6 C -0.140 4.140 7 C -0.141 4.141 8 C -0.135 4.135 9 C -0.081 4.081 10 H 0.065 0.935 11 C -0.044 4.044 12 C -0.553 4.553 13 H 0.053 0.947 14 C -0.195 4.195 15 N -0.595 5.595 16 Si 0.770 3.230 17 H -0.193 1.193 18 H -0.211 1.211 19 H -0.172 1.172 20 C -0.053 4.053 21 H 0.073 0.927 22 H 0.092 0.908 23 H 0.079 0.921 24 H 0.093 0.907 25 H 0.080 0.920 26 H 0.092 0.908 27 H 0.062 0.938 28 H 0.102 0.898 29 H 0.049 0.951 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.034 0.966 37 H 0.031 0.969 38 H 0.073 0.927 39 H 0.051 0.949 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.034 13.689 4.961 20.223 hybrid contribution 1.505 0.395 0.099 1.559 sum -12.530 14.084 5.060 19.518 Atomic orbital electron populations 1.21802 0.92999 1.02155 1.02325 1.21905 0.96692 0.92714 0.92490 1.22470 1.00840 0.97531 1.03017 1.61748 1.12193 1.48896 1.02588 1.21967 1.00175 0.94991 0.90356 1.21915 0.99036 0.95500 0.97523 1.21135 0.94295 0.98496 1.00179 1.21212 0.96245 1.00262 0.95798 1.19881 0.95001 0.97687 0.95552 0.93545 1.19595 0.94045 0.95169 0.95576 1.21419 0.93174 1.07956 1.32703 0.94682 1.25982 1.00804 0.96442 0.96223 1.70072 1.16580 1.26811 1.46030 0.85711 0.77848 0.80531 0.78861 1.19340 1.21091 1.17229 1.20912 0.87632 0.97147 0.99583 0.92726 0.90818 0.92148 0.90721 0.92022 0.90772 0.93783 0.89835 0.95126 0.91427 0.91394 0.93372 0.93316 0.92856 0.94108 0.96643 0.96851 0.92707 0.94925 0.92185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 9.07 71.98 0.65 -1.72 16 2 C 0.07 1.52 2.85 44.91 0.13 1.65 16 3 C -0.18 -3.41 8.64 71.98 0.62 -2.79 16 4 N -0.53 -14.48 4.20 -886.47 -3.72 -18.20 16 5 C 0.05 1.31 3.72 87.16 0.32 1.63 16 6 C -0.10 -2.54 6.15 31.40 0.19 -2.34 16 7 C -0.10 -3.35 5.42 30.21 0.16 -3.19 16 8 C -0.10 -3.79 4.86 30.28 0.15 -3.64 16 9 C -0.06 -2.52 1.90 -12.47 -0.02 -2.55 16 10 H 0.05 2.06 7.59 -2.39 -0.02 2.04 16 11 C -0.01 -0.28 3.45 29.84 0.10 -0.18 16 12 C -0.51 -30.17 8.68 25.60 0.22 -29.95 16 13 H 0.03 2.27 7.32 -2.91 -0.02 2.25 16 14 C 0.00 0.09 5.47 84.65 0.46 0.55 16 15 N -0.95 -61.03 13.96 21.45 0.30 -60.73 16 16 Si 0.95 45.30 27.47 68.60 1.88 47.19 16 17 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 18 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 19 H -0.25 -11.08 6.54 99.48 0.65 -10.43 16 20 C 0.07 2.44 3.29 83.94 0.28 2.72 16 21 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 22 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 23 H 0.06 0.97 6.53 -2.38 -0.02 0.95 16 24 H 0.07 1.71 7.83 -2.38 -0.02 1.69 16 25 H 0.06 1.10 6.53 -2.39 -0.02 1.09 16 26 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.04 0.95 7.25 -2.38 -0.02 0.93 16 28 H 0.08 1.66 4.94 -2.39 -0.01 1.64 16 29 H 0.03 0.80 6.51 -2.39 -0.02 0.78 16 30 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 33 H 0.05 1.71 7.38 -2.39 -0.02 1.69 16 34 H 0.05 1.93 7.15 -2.38 -0.02 1.91 16 35 H 0.04 1.88 6.49 -2.39 -0.02 1.87 16 36 H 0.02 0.73 7.20 -2.39 -0.02 0.71 16 37 H 0.01 0.62 7.52 -2.39 -0.02 0.60 16 38 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 39 H 0.03 1.06 6.93 -2.39 -0.02 1.04 16 40 H 0.06 1.94 7.55 -2.39 -0.02 1.93 16 Total: -1.00 -65.12 291.73 2.66 -62.46 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: 0.92 Total: 9.07 kcal Atomic # 6 Polarization: -43.06 SS G_CDS: 3.27 Total: -39.79 kcal Atomic # 7 Polarization: -75.51 SS G_CDS: -3.42 Total: -78.93 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 1.88 Total: 47.19 kcal Total: -65.12 2.66 -62.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260379101.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.257 kcal (2) G-P(sol) polarization free energy of solvation -65.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds