Wall clock time and date at job start Mon Mar 30 2020 02:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47721 * 2 1 4 4 H 1.09003 * 109.47241 * 304.52290 * 3 2 1 5 5 C 1.50693 * 109.47619 * 184.51950 * 3 2 1 6 6 H 1.07999 * 120.00551 * 240.00075 * 5 3 2 7 7 C 1.37883 * 119.99845 * 59.99920 * 5 3 2 8 8 N 1.31512 * 120.00110 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 119.99810 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47496 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.47146 * 120.00131 * 9 7 5 12 12 H 1.48498 * 109.47479 * 240.00073 * 9 7 5 13 13 C 1.52996 * 109.46973 * 64.51557 * 3 2 1 14 14 H 1.08999 * 108.82557 * 304.22790 * 13 3 2 15 15 C 1.45878 * 108.75964 * 62.66007 * 13 3 2 16 16 C 1.54523 * 111.67878 * 182.25873 * 15 13 3 17 17 C 1.50538 * 108.85752 * 282.75542 * 16 15 13 18 18 C 1.53917 * 112.94084 * 91.75415 * 17 16 15 19 19 N 1.47984 * 113.35657 * 317.73079 * 18 17 16 20 20 C 1.46895 * 111.06223 * 192.21102 * 19 18 17 21 21 C 1.44305 * 113.62922 * 318.20061 * 19 18 17 22 22 H 1.08995 * 109.47176 * 54.05303 * 1 2 3 23 23 H 1.09001 * 109.47430 * 174.05643 * 1 2 3 24 24 H 1.09005 * 109.47180 * 294.05338 * 1 2 3 25 25 H 1.09006 * 109.47285 * 239.99591 * 2 1 3 26 26 H 1.09000 * 109.47376 * 120.00139 * 2 1 3 27 27 H 0.97000 * 120.00104 * 179.97438 * 8 7 5 28 28 H 1.09000 * 109.04142 * 302.82471 * 15 13 3 29 29 H 1.09006 * 109.03814 * 61.76973 * 15 13 3 30 30 H 1.08999 * 109.57182 * 42.56488 * 16 15 13 31 31 H 1.08998 * 109.57313 * 162.81453 * 16 15 13 32 32 H 1.09009 * 108.78459 * 212.64107 * 17 16 15 33 33 H 1.08997 * 108.79213 * 330.85523 * 17 16 15 34 34 H 1.09002 * 108.71493 * 78.74391 * 18 17 16 35 35 H 1.08994 * 108.71391 * 196.88799 * 18 17 16 36 36 H 1.09000 * 109.47309 * 187.43993 * 20 19 18 37 37 H 1.09003 * 109.47113 * 307.43811 * 20 19 18 38 38 H 1.08999 * 109.47505 * 67.43909 * 20 19 18 39 39 H 1.09005 * 109.69302 * 335.61927 * 21 19 18 40 40 H 1.08998 * 109.69164 * 215.07118 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6122 1.9792 -0.8467 5 6 3.5429 1.4439 -0.1119 6 1 4.1421 1.8905 0.6676 7 6 4.1529 0.8748 -1.2098 8 7 3.4233 0.3313 -2.1594 9 14 6.0157 0.8772 -1.3489 10 1 6.6002 1.5456 -0.1585 11 1 6.5084 -0.5218 -1.4223 12 1 6.4195 1.6092 -2.5762 13 6 1.6250 2.1301 1.3021 14 1 0.5427 2.0569 1.4091 15 6 2.2567 1.4381 2.4202 16 6 1.8370 2.0452 3.7778 17 6 2.5977 3.3262 3.9940 18 6 1.8461 4.5651 3.4751 19 7 1.1996 4.3514 2.1612 20 6 0.7501 5.6238 1.5808 21 6 2.0178 3.6171 1.2265 22 1 -0.3633 0.6032 -0.8319 23 1 -0.3634 -1.0221 -0.1064 24 1 -0.3634 0.4189 0.9385 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.8525 -0.0687 -2.9319 28 1 1.9687 0.3871 2.3965 29 1 3.3395 1.5123 2.3183 30 1 0.7670 2.2528 3.7698 31 1 2.0666 1.3424 4.5787 32 1 2.7822 3.4490 5.0613 33 1 3.5563 3.2563 3.4800 34 1 1.0806 4.8393 4.2010 35 1 2.5525 5.3901 3.3844 36 1 0.1642 5.4269 0.6831 37 1 0.1355 6.1570 2.3061 38 1 1.6172 6.2318 1.3226 39 1 3.0694 3.7331 1.4889 40 1 1.8478 3.9910 0.2169 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260462512.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:43 Heat of formation + Delta-G solvation = -17.032375 kcal Electronic energy + Delta-G solvation = -17016.442098 eV Core-core repulsion = 14637.278885 eV Total energy + Delta-G solvation = -2379.163213 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.96376 -35.69593 -33.48199 -31.85976 -30.53792 -27.55151 -26.58035 -24.52539 -23.72549 -22.45308 -20.43844 -19.19317 -18.44684 -16.08322 -15.50791 -14.98351 -14.56662 -14.25706 -13.76118 -13.12799 -12.90695 -12.76015 -12.58972 -12.31106 -12.12115 -11.56290 -11.31049 -11.19807 -10.93525 -10.83134 -10.59649 -10.50696 -10.35838 -10.01796 -9.99444 -9.91993 -9.48131 -9.10464 -8.74808 -8.48540 -8.18842 -7.65440 -5.90012 -3.94994 3.31652 3.40409 3.43196 4.38363 4.49152 5.17737 5.34662 5.38897 5.52364 5.60229 5.74534 5.81698 5.90988 5.98786 6.10671 6.12698 6.24058 6.34390 6.36260 6.41413 6.49434 6.56056 6.61768 6.68708 6.89336 6.99441 7.05547 7.15954 7.30358 7.38728 7.43329 7.59370 7.64523 7.83110 7.87465 8.13740 8.27868 8.59012 9.09294 9.68694 11.15027 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.024265 B = 0.009645 C = 0.008672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.654285 B = 2902.461243 C = 3227.886379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.119 4.119 3 C 0.052 3.948 4 H 0.022 0.978 5 C -0.501 4.501 6 H 0.056 0.944 7 C 0.059 3.941 8 N -0.890 5.890 9 Si 0.882 3.118 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.287 1.287 13 C -0.068 4.068 14 H 0.053 0.947 15 C -0.103 4.103 16 C -0.115 4.115 17 C -0.117 4.117 18 C 0.067 3.933 19 N -0.555 5.555 20 C 0.032 3.968 21 C 0.079 3.921 22 H 0.041 0.959 23 H 0.028 0.972 24 H 0.038 0.962 25 H 0.089 0.911 26 H 0.034 0.966 27 H 0.257 0.743 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.047 0.953 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.022 0.978 36 H 0.066 0.934 37 H 0.056 0.944 38 H 0.018 0.982 39 H 0.040 0.960 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.720 5.647 8.685 11.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.157 4.157 3 C 0.033 3.967 4 H 0.040 0.960 5 C -0.540 4.540 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.529 5.529 9 Si 0.710 3.290 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.213 1.213 13 C -0.087 4.087 14 H 0.071 0.929 15 C -0.140 4.140 16 C -0.153 4.153 17 C -0.155 4.155 18 C -0.060 4.060 19 N -0.280 5.280 20 C -0.116 4.116 21 C -0.048 4.048 22 H 0.060 0.940 23 H 0.048 0.952 24 H 0.057 0.943 25 H 0.107 0.893 26 H 0.053 0.947 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.040 0.960 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.036 0.964 39 H 0.058 0.942 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.072 5.288 8.596 10.883 hybrid contribution 1.808 0.487 -0.350 1.905 sum -2.264 5.775 8.247 10.319 Atomic orbital electron populations 1.21859 0.99680 0.98882 0.99931 1.21657 0.91297 1.00688 1.02088 1.18803 0.95127 0.91668 0.91106 0.95994 1.21299 0.91747 1.36242 1.04678 0.92631 1.24966 0.97369 0.95734 0.96029 1.69893 1.34359 1.39101 1.09589 0.86702 0.86880 0.77568 0.77809 1.19978 1.21227 1.21291 1.20016 0.98749 0.92696 0.97229 0.92907 1.20656 1.01483 0.99298 0.92607 1.21367 1.00428 0.95262 0.98214 1.21366 0.99467 0.95074 0.99607 1.22312 0.96241 0.96346 0.91102 1.60807 1.44100 1.19140 1.03944 1.22327 0.98945 0.90675 0.99653 1.21807 0.94480 0.94715 0.93840 0.93967 0.95249 0.94302 0.89252 0.94685 0.93328 0.92431 0.91644 0.91775 0.93428 0.92614 0.92165 0.92054 0.95958 0.91497 0.92469 0.96354 0.94181 0.91912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 9.50 37.16 0.35 -2.60 16 2 C -0.12 -2.81 5.02 -26.74 -0.13 -2.94 16 3 C 0.05 1.25 1.48 -91.78 -0.14 1.11 16 4 H 0.02 0.59 7.99 -51.93 -0.41 0.18 16 5 C -0.50 -13.19 7.29 -34.44 -0.25 -13.45 16 6 H 0.06 1.46 6.01 -52.49 -0.32 1.14 16 7 C 0.06 1.62 5.29 -17.82 -0.09 1.53 16 8 N -0.89 -25.27 11.30 55.43 0.63 -24.65 16 9 Si 0.88 21.22 29.54 -169.99 -5.02 16.20 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 13 C -0.07 -1.38 1.48 -93.48 -0.14 -1.52 16 14 H 0.05 1.09 6.38 -51.93 -0.33 0.76 16 15 C -0.10 -1.99 4.16 -29.30 -0.12 -2.11 16 16 C -0.12 -1.84 5.63 -27.16 -0.15 -1.99 16 17 C -0.12 -1.74 5.27 -27.48 -0.14 -1.89 16 18 C 0.07 0.99 5.43 -2.75 -0.01 0.97 16 19 N -0.56 -9.17 4.26 -242.89 -1.03 -10.20 16 20 C 0.03 0.46 9.27 60.06 0.56 1.01 16 21 C 0.08 1.52 4.25 -4.70 -0.02 1.50 16 22 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 23 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.04 0.73 6.75 -51.93 -0.35 0.38 16 25 H 0.09 2.39 5.96 -51.93 -0.31 2.08 16 26 H 0.03 0.81 6.15 -51.93 -0.32 0.49 16 27 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 28 H 0.06 1.14 6.01 -51.93 -0.31 0.83 16 29 H 0.07 1.37 5.70 -51.93 -0.30 1.08 16 30 H 0.06 1.05 7.79 -51.93 -0.40 0.64 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 33 H 0.06 0.98 6.66 -51.93 -0.35 0.63 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.02 0.32 8.02 -51.93 -0.42 -0.10 16 36 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 37 H 0.06 0.69 8.11 -51.93 -0.42 0.27 16 38 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.04 0.82 6.42 -51.93 -0.33 0.48 16 40 H 0.06 1.28 7.28 -51.93 -0.38 0.90 16 LS Contribution 290.94 15.07 4.38 4.38 Total: -1.00 -27.15 290.94 -8.38 -35.53 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -7.04 Total: -0.90 kcal Atomic # 6 Polarization: -20.07 SS G_CDS: -0.30 Total: -20.37 kcal Atomic # 7 Polarization: -34.44 SS G_CDS: -0.41 Total: -34.85 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -27.15 -8.38 -35.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260462512.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.499 kcal (2) G-P(sol) polarization free energy of solvation -27.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds