Wall clock time and date at job start Mon Mar 30 2020 02:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47721 * 2 1 4 4 H 1.09003 * 109.47241 * 304.52290 * 3 2 1 5 5 C 1.50693 * 109.47619 * 184.51950 * 3 2 1 6 6 H 1.07999 * 120.00551 * 240.00075 * 5 3 2 7 7 C 1.37883 * 119.99845 * 59.99920 * 5 3 2 8 8 N 1.31512 * 120.00110 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 119.99810 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47496 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.47146 * 120.00131 * 9 7 5 12 12 H 1.48498 * 109.47479 * 240.00073 * 9 7 5 13 13 C 1.52996 * 109.46973 * 64.51557 * 3 2 1 14 14 H 1.08999 * 108.82557 * 304.22790 * 13 3 2 15 15 C 1.45878 * 108.75964 * 62.66007 * 13 3 2 16 16 C 1.54523 * 111.67878 * 182.25873 * 15 13 3 17 17 C 1.50538 * 108.85752 * 282.75542 * 16 15 13 18 18 C 1.53917 * 112.94084 * 91.75415 * 17 16 15 19 19 N 1.47984 * 113.35657 * 317.73079 * 18 17 16 20 20 C 1.46895 * 111.06223 * 192.21102 * 19 18 17 21 21 C 1.44305 * 113.62922 * 318.20061 * 19 18 17 22 22 H 1.08995 * 109.47176 * 54.05303 * 1 2 3 23 23 H 1.09001 * 109.47430 * 174.05643 * 1 2 3 24 24 H 1.09005 * 109.47180 * 294.05338 * 1 2 3 25 25 H 1.09006 * 109.47285 * 239.99591 * 2 1 3 26 26 H 1.09000 * 109.47376 * 120.00139 * 2 1 3 27 27 H 0.97000 * 120.00104 * 179.97438 * 8 7 5 28 28 H 1.09000 * 109.04142 * 302.82471 * 15 13 3 29 29 H 1.09006 * 109.03814 * 61.76973 * 15 13 3 30 30 H 1.08999 * 109.57182 * 42.56488 * 16 15 13 31 31 H 1.08998 * 109.57313 * 162.81453 * 16 15 13 32 32 H 1.09009 * 108.78459 * 212.64107 * 17 16 15 33 33 H 1.08997 * 108.79213 * 330.85523 * 17 16 15 34 34 H 1.09002 * 108.71493 * 78.74391 * 18 17 16 35 35 H 1.08994 * 108.71391 * 196.88799 * 18 17 16 36 36 H 1.09000 * 109.47309 * 187.43993 * 20 19 18 37 37 H 1.09003 * 109.47113 * 307.43811 * 20 19 18 38 38 H 1.08999 * 109.47505 * 67.43909 * 20 19 18 39 39 H 1.09005 * 109.69302 * 335.61927 * 21 19 18 40 40 H 1.08998 * 109.69164 * 215.07118 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6122 1.9792 -0.8467 5 6 3.5429 1.4439 -0.1119 6 1 4.1421 1.8905 0.6676 7 6 4.1529 0.8748 -1.2098 8 7 3.4233 0.3313 -2.1594 9 14 6.0157 0.8772 -1.3489 10 1 6.6002 1.5456 -0.1585 11 1 6.5084 -0.5218 -1.4223 12 1 6.4195 1.6092 -2.5762 13 6 1.6250 2.1301 1.3021 14 1 0.5427 2.0569 1.4091 15 6 2.2567 1.4381 2.4202 16 6 1.8370 2.0452 3.7778 17 6 2.5977 3.3262 3.9940 18 6 1.8461 4.5651 3.4751 19 7 1.1996 4.3514 2.1612 20 6 0.7501 5.6238 1.5808 21 6 2.0178 3.6171 1.2265 22 1 -0.3633 0.6032 -0.8319 23 1 -0.3634 -1.0221 -0.1064 24 1 -0.3634 0.4189 0.9385 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.8525 -0.0687 -2.9319 28 1 1.9687 0.3871 2.3965 29 1 3.3395 1.5123 2.3183 30 1 0.7670 2.2528 3.7698 31 1 2.0666 1.3424 4.5787 32 1 2.7822 3.4490 5.0613 33 1 3.5563 3.2563 3.4800 34 1 1.0806 4.8393 4.2010 35 1 2.5525 5.3901 3.3844 36 1 0.1642 5.4269 0.6831 37 1 0.1355 6.1570 2.3061 38 1 1.6172 6.2318 1.3226 39 1 3.0694 3.7331 1.4889 40 1 1.8478 3.9910 0.2169 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260462512.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:43 Heat of formation + Delta-G solvation = -31.792719 kcal Electronic energy + Delta-G solvation = -17017.082155 eV Core-core repulsion = 14637.278885 eV Total energy + Delta-G solvation = -2379.803269 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.45750 -37.31776 -34.91917 -33.77577 -32.16530 -29.06032 -28.22118 -26.03471 -25.29922 -24.09990 -22.05948 -20.49846 -20.28948 -17.98960 -16.95927 -16.67479 -16.09385 -15.78344 -15.34039 -14.75918 -14.39351 -14.19888 -14.07217 -13.82831 -13.64467 -13.12669 -13.07783 -12.76156 -12.68857 -12.44504 -12.18662 -12.10936 -11.85766 -11.74988 -11.66671 -11.41054 -11.12718 -10.83995 -10.56115 -10.39112 -10.23077 -8.98882 -7.99929 -6.10446 1.38097 1.41384 1.50582 2.46341 3.11360 3.27939 3.94704 4.14693 4.22111 4.31910 4.36489 4.55048 4.57624 4.64894 4.67370 4.74870 4.87117 4.87858 4.93545 4.97427 5.04259 5.07444 5.17516 5.22680 5.32071 5.39780 5.48115 5.53091 5.60828 5.66316 5.67615 5.78663 5.86308 6.15216 6.29176 6.35301 6.41094 6.56852 7.02258 7.55708 9.04059 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.024265 B = 0.009645 C = 0.008672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.654285 B = 2902.461243 C = 3227.886379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.116 4.116 3 C 0.052 3.948 4 H -0.015 1.015 5 C -0.504 4.504 6 H 0.053 0.947 7 C 0.009 3.991 8 N -0.919 5.919 9 Si 0.940 3.060 10 H -0.269 1.269 11 H -0.284 1.284 12 H -0.286 1.286 13 C -0.056 4.056 14 H 0.054 0.946 15 C -0.100 4.100 16 C -0.105 4.105 17 C -0.118 4.118 18 C 0.065 3.935 19 N -0.563 5.563 20 C 0.032 3.968 21 C 0.092 3.908 22 H 0.034 0.966 23 H 0.047 0.953 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.036 0.964 27 H 0.255 0.745 28 H 0.048 0.952 29 H 0.043 0.957 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.040 0.960 34 H 0.085 0.915 35 H 0.028 0.972 36 H 0.061 0.939 37 H 0.083 0.917 38 H 0.019 0.981 39 H 0.024 0.976 40 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.063 6.444 10.792 13.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.154 4.154 3 C 0.033 3.967 4 H 0.003 0.997 5 C -0.543 4.543 6 H 0.071 0.929 7 C -0.188 4.188 8 N -0.560 5.560 9 Si 0.767 3.233 10 H -0.193 1.193 11 H -0.210 1.210 12 H -0.212 1.212 13 C -0.075 4.075 14 H 0.072 0.928 15 C -0.137 4.137 16 C -0.142 4.142 17 C -0.155 4.155 18 C -0.062 4.062 19 N -0.288 5.288 20 C -0.116 4.116 21 C -0.036 4.036 22 H 0.053 0.947 23 H 0.066 0.934 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.104 0.896 33 H 0.059 0.941 34 H 0.103 0.897 35 H 0.046 0.954 36 H 0.080 0.920 37 H 0.102 0.898 38 H 0.037 0.963 39 H 0.043 0.957 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.416 6.099 10.718 13.099 hybrid contribution 1.891 0.258 -1.003 2.156 sum -2.525 6.357 9.715 11.881 Atomic orbital electron populations 1.21728 0.96954 1.00111 1.00513 1.21510 0.93757 0.99721 1.00369 1.18761 0.93922 0.92151 0.91878 0.99659 1.21565 0.93043 1.35352 1.04305 0.92921 1.25664 1.01287 0.95841 0.96024 1.70036 1.35806 1.40061 1.10047 0.85781 0.82276 0.77470 0.77776 1.19303 1.21038 1.21211 1.19866 0.98680 0.93341 0.95616 0.92780 1.20569 0.99852 0.98920 0.94378 1.21272 1.00584 0.96087 0.96307 1.21377 0.98252 0.94571 1.01321 1.22425 0.97076 0.96426 0.90268 1.60778 1.43423 1.20377 1.04197 1.22383 0.99245 0.89742 1.00246 1.21513 0.94021 0.94421 0.93688 0.94695 0.93415 0.92599 0.92678 0.94571 0.93523 0.93326 0.93852 0.91517 0.91541 0.89585 0.94133 0.89657 0.95364 0.92004 0.89793 0.96257 0.95742 0.93903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.41 9.50 71.98 0.68 -4.73 16 2 C -0.12 -5.54 5.02 30.59 0.15 -5.38 16 3 C 0.05 2.57 1.48 -11.54 -0.02 2.55 16 4 H -0.01 -0.83 7.99 -2.39 -0.02 -0.85 16 5 C -0.50 -27.21 7.29 25.60 0.19 -27.03 16 6 H 0.05 2.82 6.01 -2.91 -0.02 2.81 16 7 C 0.01 0.52 5.29 84.66 0.45 0.96 16 8 N -0.92 -53.75 11.30 21.45 0.24 -53.51 16 9 Si 0.94 44.24 29.54 68.60 2.03 46.27 16 10 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 12 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 13 C -0.06 -2.28 1.48 -12.65 -0.02 -2.30 16 14 H 0.05 2.19 6.38 -2.39 -0.02 2.17 16 15 C -0.10 -3.77 4.16 28.93 0.12 -3.65 16 16 C -0.10 -3.08 5.63 30.31 0.17 -2.91 16 17 C -0.12 -3.15 5.27 30.11 0.16 -3.00 16 18 C 0.06 1.70 5.43 86.40 0.47 2.17 16 19 N -0.56 -17.56 4.26 -922.36 -3.93 -21.49 16 20 C 0.03 0.83 9.27 127.69 1.18 2.01 16 21 C 0.09 3.55 4.25 87.12 0.37 3.92 16 22 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 23 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.06 2.02 6.75 -2.38 -0.02 2.00 16 25 H 0.05 3.03 5.96 -2.38 -0.01 3.02 16 26 H 0.04 1.68 6.15 -2.39 -0.01 1.67 16 27 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 28 H 0.05 1.89 6.01 -2.39 -0.01 1.88 16 29 H 0.04 1.82 5.70 -2.38 -0.01 1.80 16 30 H 0.07 1.96 7.79 -2.39 -0.02 1.94 16 31 H 0.07 1.71 8.14 -2.39 -0.02 1.70 16 32 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 33 H 0.04 1.25 6.66 -2.39 -0.02 1.23 16 34 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.03 0.72 8.02 -2.39 -0.02 0.70 16 36 H 0.06 1.66 8.08 -2.39 -0.02 1.65 16 37 H 0.08 1.76 8.11 -2.39 -0.02 1.74 16 38 H 0.02 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.02 1.00 6.42 -2.38 -0.02 0.99 16 40 H 0.04 1.79 7.28 -2.39 -0.02 1.77 16 Total: -1.00 -59.07 290.94 3.24 -55.84 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: 0.98 Total: 10.28 kcal Atomic # 6 Polarization: -41.30 SS G_CDS: 3.91 Total: -37.39 kcal Atomic # 7 Polarization: -71.31 SS G_CDS: -3.68 Total: -75.00 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -59.07 3.24 -55.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260462512.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.045 kcal (2) G-P(sol) polarization free energy of solvation -59.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds