Wall clock time and date at job start Mon Mar 30 2020 02:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46733 * 2 1 4 4 H 1.09004 * 109.47078 * 304.61313 * 3 2 1 5 5 C 1.50698 * 109.47467 * 64.61717 * 3 2 1 6 6 H 1.07991 * 120.00039 * 64.13419 * 5 3 2 7 7 C 1.37881 * 119.99906 * 244.13314 * 5 3 2 8 8 N 1.31520 * 120.00044 * 8.43109 * 7 5 3 9 9 Si 1.86793 * 119.99948 * 188.43107 * 7 5 3 10 10 H 1.48500 * 109.47292 * 269.99795 * 9 7 5 11 11 H 1.48497 * 109.47237 * 29.99840 * 9 7 5 12 12 H 1.48508 * 109.47262 * 150.00211 * 9 7 5 13 13 C 1.53000 * 109.46956 * 184.61803 * 3 2 1 14 14 H 1.08997 * 108.81711 * 301.51361 * 13 3 2 15 15 C 1.45871 * 108.84751 * 59.99625 * 13 3 2 16 16 C 1.54519 * 111.68220 * 182.31472 * 15 13 3 17 17 C 1.50535 * 108.85439 * 282.73928 * 16 15 13 18 18 C 1.53918 * 112.93330 * 91.75695 * 17 16 15 19 19 N 1.47942 * 113.33100 * 317.76188 * 18 17 16 20 20 C 1.46908 * 110.99790 * 192.17167 * 19 18 17 21 21 C 1.44300 * 113.65337 * 318.13297 * 19 18 17 22 22 H 1.08998 * 109.47563 * 304.28475 * 1 2 3 23 23 H 1.09008 * 109.47059 * 64.28453 * 1 2 3 24 24 H 1.09004 * 109.46787 * 184.27783 * 1 2 3 25 25 H 1.08997 * 109.47432 * 240.00005 * 2 1 3 26 26 H 1.08996 * 109.46629 * 119.99312 * 2 1 3 27 27 H 0.97000 * 119.99916 * 355.43137 * 8 7 5 28 28 H 1.09001 * 109.03937 * 302.88094 * 15 13 3 29 29 H 1.09001 * 109.04221 * 61.74593 * 15 13 3 30 30 H 1.08992 * 109.57428 * 42.55140 * 16 15 13 31 31 H 1.09001 * 109.57313 * 162.80008 * 16 15 13 32 32 H 1.08998 * 108.79164 * 212.64914 * 17 16 15 33 33 H 1.09004 * 108.79203 * 330.86718 * 17 16 15 34 34 H 1.09006 * 108.70577 * 78.75172 * 18 17 16 35 35 H 1.08996 * 108.71171 * 196.76147 * 18 17 16 36 36 H 1.09004 * 109.46557 * 63.95241 * 20 19 18 37 37 H 1.08996 * 109.46867 * 183.95261 * 20 19 18 38 38 H 1.08993 * 109.47255 * 303.95391 * 20 19 18 39 39 H 1.08997 * 109.69415 * 335.67743 * 21 19 18 40 40 H 1.09006 * 109.68912 * 215.10262 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6106 1.9797 -0.8458 5 6 1.6332 2.1192 1.2836 6 1 2.0211 1.7650 2.2272 7 6 0.7657 3.1905 1.2533 8 7 0.1644 3.5183 0.1305 9 14 0.4446 4.1764 2.8070 10 1 -0.7041 3.5857 3.5396 11 1 1.6517 4.1454 3.6714 12 1 0.1307 5.5822 2.4453 13 6 3.5655 1.4442 -0.1161 14 1 3.9823 0.8818 0.7194 15 6 3.9440 0.7867 -1.3621 16 6 5.4788 0.7007 -1.5189 17 6 6.0010 2.0483 -1.9401 18 6 6.4088 2.9327 -0.7482 19 7 5.4513 2.8762 0.3781 20 6 5.7246 3.9385 1.3553 21 6 4.0690 2.8971 -0.0356 22 1 -0.3634 0.5789 0.8491 23 1 -0.3633 0.4459 -0.9260 24 1 -0.3633 -1.0249 0.0767 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5137 0.8900 27 1 0.3808 3.0490 -0.6904 28 1 3.5285 -0.2210 -1.3728 29 1 3.5319 1.3486 -2.2002 30 1 5.9277 0.4163 -0.5673 31 1 5.7274 -0.0425 -2.2765 32 1 6.8692 1.9032 -2.5829 33 1 5.2270 2.5623 -2.5101 34 1 7.3872 2.6099 -0.3920 35 1 6.4869 3.9650 -1.0894 36 1 5.5677 4.9108 0.8882 37 1 5.0519 3.8313 2.2062 38 1 6.7570 3.8616 1.6963 39 1 3.9856 3.3696 -1.0143 40 1 3.4762 3.4515 0.6921 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260462538.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:48 Heat of formation + Delta-G solvation = -21.146182 kcal Electronic energy + Delta-G solvation = -17051.416540 eV Core-core repulsion = 14672.074940 eV Total energy + Delta-G solvation = -2379.341601 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.92628 -35.72220 -33.74473 -31.73394 -30.90142 -27.50656 -26.08502 -24.89765 -23.37067 -22.38915 -20.35167 -19.26901 -18.93535 -16.48663 -15.60818 -14.81209 -14.63072 -13.90070 -13.70866 -13.36649 -13.05269 -12.84179 -12.68148 -12.36441 -12.09027 -11.67990 -11.29215 -11.19609 -10.89285 -10.79090 -10.59123 -10.41271 -10.26896 -10.18706 -10.05573 -9.74123 -9.63396 -9.23351 -8.91464 -8.40413 -8.13167 -7.58669 -6.25280 -3.90006 3.45074 3.47707 3.63282 4.46305 4.56674 5.10862 5.27659 5.41814 5.50580 5.64843 5.73014 5.83403 5.86940 5.96095 6.10029 6.14483 6.23257 6.27706 6.31081 6.32742 6.37971 6.48594 6.51989 6.68988 6.79064 6.86078 6.91500 6.99771 7.16681 7.19543 7.33257 7.42377 7.65817 7.68854 7.76877 7.95839 8.40989 8.56081 9.01806 9.77126 11.13115 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.023560 B = 0.011229 C = 0.008325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.159237 B = 2492.879639 C = 3362.602156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.109 4.109 3 C 0.024 3.976 4 H 0.039 0.961 5 C -0.574 4.574 6 H 0.046 0.954 7 C 0.022 3.978 8 N -0.917 5.917 9 Si 1.057 2.943 10 H -0.290 1.290 11 H -0.289 1.289 12 H -0.287 1.287 13 C -0.069 4.069 14 H 0.058 0.942 15 C -0.111 4.111 16 C -0.111 4.111 17 C -0.116 4.116 18 C 0.065 3.935 19 N -0.552 5.552 20 C 0.033 3.967 21 C 0.077 3.923 22 H 0.067 0.933 23 H 0.037 0.963 24 H 0.023 0.977 25 H 0.028 0.972 26 H 0.040 0.960 27 H 0.270 0.730 28 H 0.057 0.943 29 H 0.045 0.955 30 H 0.068 0.932 31 H 0.048 0.952 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.022 0.978 36 H 0.017 0.983 37 H 0.071 0.929 38 H 0.055 0.945 39 H 0.021 0.979 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.462 -2.159 -1.963 9.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.147 4.147 3 C 0.005 3.995 4 H 0.058 0.942 5 C -0.613 4.613 6 H 0.064 0.936 7 C -0.182 4.182 8 N -0.555 5.555 9 Si 0.887 3.113 10 H -0.217 1.217 11 H -0.215 1.215 12 H -0.213 1.213 13 C -0.088 4.088 14 H 0.077 0.923 15 C -0.148 4.148 16 C -0.149 4.149 17 C -0.154 4.154 18 C -0.063 4.063 19 N -0.276 5.276 20 C -0.115 4.115 21 C -0.050 4.050 22 H 0.086 0.914 23 H 0.056 0.944 24 H 0.042 0.958 25 H 0.047 0.953 26 H 0.059 0.941 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.087 0.913 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.040 0.960 36 H 0.035 0.965 37 H 0.090 0.910 38 H 0.074 0.926 39 H 0.039 0.961 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 8.627 -1.314 -1.142 8.801 hybrid contribution 0.794 -0.462 -1.012 1.367 sum 9.420 -1.776 -2.155 9.825 Atomic orbital electron populations 1.21585 0.96992 0.98323 1.02095 1.21668 0.95308 0.99617 0.98079 1.19146 0.90073 0.92093 0.98230 0.94236 1.21799 1.30561 1.16155 0.92756 0.93607 1.25639 0.93271 0.96285 1.03018 1.70800 1.39367 1.44982 1.00319 0.83713 0.76004 0.76558 0.75029 1.21666 1.21494 1.21255 1.20043 0.98461 0.94537 0.95798 0.92328 1.20798 0.94031 1.00691 0.99272 1.21307 0.97108 0.95476 1.01023 1.21349 1.00433 0.96818 0.96810 1.22320 0.95821 0.97111 0.91011 1.60751 1.05003 1.47062 1.14791 1.22336 1.01054 0.91875 0.96255 1.21884 0.85877 0.98120 0.99095 0.91401 0.94431 0.95809 0.95303 0.94080 0.91696 0.92494 0.93592 0.91305 0.93355 0.92477 0.92488 0.92069 0.95990 0.96463 0.91016 0.92633 0.96054 0.88968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.89 9.79 37.16 0.36 -2.53 16 2 C -0.11 -2.37 5.13 -26.73 -0.14 -2.51 16 3 C 0.02 0.57 1.61 -91.77 -0.15 0.42 16 4 H 0.04 1.03 5.75 -51.93 -0.30 0.73 16 5 C -0.57 -15.10 5.52 -34.44 -0.19 -15.29 16 6 H 0.05 1.25 7.83 -52.49 -0.41 0.84 16 7 C 0.02 0.59 5.35 -17.82 -0.10 0.50 16 8 N -0.92 -26.51 13.65 55.43 0.76 -25.76 16 9 Si 1.06 24.77 29.91 -169.99 -5.08 19.68 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 13 C -0.07 -1.44 1.45 -93.48 -0.14 -1.58 16 14 H 0.06 1.31 8.08 -51.93 -0.42 0.89 16 15 C -0.11 -2.01 4.35 -29.31 -0.13 -2.14 16 16 C -0.11 -1.73 5.63 -27.17 -0.15 -1.89 16 17 C -0.12 -1.71 5.28 -27.48 -0.14 -1.85 16 18 C 0.06 1.00 5.44 -2.77 -0.02 0.98 16 19 N -0.55 -9.94 4.25 -242.92 -1.03 -10.97 16 20 C 0.03 0.54 9.29 60.07 0.56 1.10 16 21 C 0.08 1.62 4.71 -4.70 -0.02 1.59 16 22 H 0.07 1.65 7.21 -51.93 -0.37 1.27 16 23 H 0.04 0.82 8.14 -51.92 -0.42 0.39 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.03 0.57 6.08 -51.93 -0.32 0.26 16 26 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 27 H 0.27 7.82 6.31 -40.82 -0.26 7.56 16 28 H 0.06 1.02 5.93 -51.93 -0.31 0.71 16 29 H 0.05 0.86 7.59 -51.93 -0.39 0.46 16 30 H 0.07 1.12 7.78 -51.93 -0.40 0.72 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.90 6.66 -51.93 -0.35 0.55 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.02 0.33 8.02 -51.93 -0.42 -0.09 16 36 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.07 1.23 7.99 -51.93 -0.41 0.82 16 38 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.02 0.45 6.79 -51.93 -0.35 0.10 16 40 H 0.09 2.20 5.80 -51.93 -0.30 1.89 16 LS Contribution 295.63 15.07 4.46 4.46 Total: -1.00 -27.38 295.63 -8.34 -35.72 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -7.19 Total: 0.06 kcal Atomic # 6 Polarization: -22.95 SS G_CDS: -0.25 Total: -23.19 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: -0.28 Total: -36.72 kcal Atomic # 14 Polarization: 24.77 SS G_CDS: -5.08 Total: 19.68 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -27.38 -8.34 -35.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260462538.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.575 kcal (2) G-P(sol) polarization free energy of solvation -27.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds