Wall clock time and date at job start Mon Mar 30 2020 02:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46733 * 2 1 4 4 H 1.09004 * 109.47078 * 304.61313 * 3 2 1 5 5 C 1.50698 * 109.47467 * 64.61717 * 3 2 1 6 6 H 1.07991 * 120.00039 * 64.13419 * 5 3 2 7 7 C 1.37881 * 119.99906 * 244.13314 * 5 3 2 8 8 N 1.31520 * 120.00044 * 8.43109 * 7 5 3 9 9 Si 1.86793 * 119.99948 * 188.43107 * 7 5 3 10 10 H 1.48500 * 109.47292 * 269.99795 * 9 7 5 11 11 H 1.48497 * 109.47237 * 29.99840 * 9 7 5 12 12 H 1.48508 * 109.47262 * 150.00211 * 9 7 5 13 13 C 1.53000 * 109.46956 * 184.61803 * 3 2 1 14 14 H 1.08997 * 108.81711 * 301.51361 * 13 3 2 15 15 C 1.45871 * 108.84751 * 59.99625 * 13 3 2 16 16 C 1.54519 * 111.68220 * 182.31472 * 15 13 3 17 17 C 1.50535 * 108.85439 * 282.73928 * 16 15 13 18 18 C 1.53918 * 112.93330 * 91.75695 * 17 16 15 19 19 N 1.47942 * 113.33100 * 317.76188 * 18 17 16 20 20 C 1.46908 * 110.99790 * 192.17167 * 19 18 17 21 21 C 1.44300 * 113.65337 * 318.13297 * 19 18 17 22 22 H 1.08998 * 109.47563 * 304.28475 * 1 2 3 23 23 H 1.09008 * 109.47059 * 64.28453 * 1 2 3 24 24 H 1.09004 * 109.46787 * 184.27783 * 1 2 3 25 25 H 1.08997 * 109.47432 * 240.00005 * 2 1 3 26 26 H 1.08996 * 109.46629 * 119.99312 * 2 1 3 27 27 H 0.97000 * 119.99916 * 355.43137 * 8 7 5 28 28 H 1.09001 * 109.03937 * 302.88094 * 15 13 3 29 29 H 1.09001 * 109.04221 * 61.74593 * 15 13 3 30 30 H 1.08992 * 109.57428 * 42.55140 * 16 15 13 31 31 H 1.09001 * 109.57313 * 162.80008 * 16 15 13 32 32 H 1.08998 * 108.79164 * 212.64914 * 17 16 15 33 33 H 1.09004 * 108.79203 * 330.86718 * 17 16 15 34 34 H 1.09006 * 108.70577 * 78.75172 * 18 17 16 35 35 H 1.08996 * 108.71171 * 196.76147 * 18 17 16 36 36 H 1.09004 * 109.46557 * 63.95241 * 20 19 18 37 37 H 1.08996 * 109.46867 * 183.95261 * 20 19 18 38 38 H 1.08993 * 109.47255 * 303.95391 * 20 19 18 39 39 H 1.08997 * 109.69415 * 335.67743 * 21 19 18 40 40 H 1.09006 * 109.68912 * 215.10262 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6106 1.9797 -0.8458 5 6 1.6332 2.1192 1.2836 6 1 2.0211 1.7650 2.2272 7 6 0.7657 3.1905 1.2533 8 7 0.1644 3.5183 0.1305 9 14 0.4446 4.1764 2.8070 10 1 -0.7041 3.5857 3.5396 11 1 1.6517 4.1454 3.6714 12 1 0.1307 5.5822 2.4453 13 6 3.5655 1.4442 -0.1161 14 1 3.9823 0.8818 0.7194 15 6 3.9440 0.7867 -1.3621 16 6 5.4788 0.7007 -1.5189 17 6 6.0010 2.0483 -1.9401 18 6 6.4088 2.9327 -0.7482 19 7 5.4513 2.8762 0.3781 20 6 5.7246 3.9385 1.3553 21 6 4.0690 2.8971 -0.0356 22 1 -0.3634 0.5789 0.8491 23 1 -0.3633 0.4459 -0.9260 24 1 -0.3633 -1.0249 0.0767 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5137 0.8900 27 1 0.3808 3.0490 -0.6904 28 1 3.5285 -0.2210 -1.3728 29 1 3.5319 1.3486 -2.2002 30 1 5.9277 0.4163 -0.5673 31 1 5.7274 -0.0425 -2.2765 32 1 6.8692 1.9032 -2.5829 33 1 5.2270 2.5623 -2.5101 34 1 7.3872 2.6099 -0.3920 35 1 6.4869 3.9650 -1.0894 36 1 5.5677 4.9108 0.8882 37 1 5.0519 3.8313 2.2062 38 1 6.7570 3.8616 1.6963 39 1 3.9856 3.3696 -1.0143 40 1 3.4762 3.4515 0.6921 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260462538.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:48 Heat of formation + Delta-G solvation = -35.984418 kcal Electronic energy + Delta-G solvation = -17052.059975 eV Core-core repulsion = 14672.074940 eV Total energy + Delta-G solvation = -2379.985035 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.45418 -37.41384 -35.22484 -33.59258 -32.56185 -28.98407 -27.80097 -26.53371 -25.01296 -24.00805 -22.06607 -20.82795 -20.46126 -18.50739 -17.01195 -16.29216 -16.15833 -15.66886 -15.54685 -14.87807 -14.58058 -14.28104 -14.20853 -14.00485 -13.66824 -13.42604 -12.79133 -12.71680 -12.60634 -12.53512 -12.19872 -12.02955 -11.90253 -11.74869 -11.59140 -11.34821 -11.27646 -10.90726 -10.81127 -10.39337 -10.15220 -9.03325 -8.43235 -6.06574 1.52315 1.58910 1.75811 2.60804 3.09524 3.33335 3.85402 4.07828 4.13530 4.22371 4.24990 4.40377 4.50848 4.53320 4.59220 4.66846 4.74490 4.78952 4.84386 4.91453 4.98380 5.01365 5.07373 5.11864 5.14200 5.21735 5.37644 5.44562 5.48744 5.53773 5.58754 5.63343 5.81150 5.87831 6.31820 6.32535 6.38690 6.44546 6.87923 7.65736 8.95744 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.023560 B = 0.011229 C = 0.008325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.159237 B = 2492.879639 C = 3362.602156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.105 4.105 3 C 0.020 3.980 4 H 0.012 0.988 5 C -0.568 4.568 6 H 0.032 0.968 7 C -0.021 4.021 8 N -0.944 5.944 9 Si 1.094 2.906 10 H -0.280 1.280 11 H -0.274 1.274 12 H -0.289 1.289 13 C -0.057 4.057 14 H 0.045 0.955 15 C -0.110 4.110 16 C -0.103 4.103 17 C -0.117 4.117 18 C 0.061 3.939 19 N -0.561 5.561 20 C 0.033 3.967 21 C 0.091 3.909 22 H 0.035 0.965 23 H 0.028 0.972 24 H 0.055 0.945 25 H 0.052 0.948 26 H 0.040 0.960 27 H 0.259 0.741 28 H 0.061 0.939 29 H 0.037 0.963 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.041 0.959 34 H 0.084 0.916 35 H 0.026 0.974 36 H 0.018 0.982 37 H 0.054 0.946 38 H 0.085 0.915 39 H 0.010 0.990 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.364 -3.039 -2.131 11.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.143 4.143 3 C 0.001 3.999 4 H 0.030 0.970 5 C -0.607 4.607 6 H 0.050 0.950 7 C -0.220 4.220 8 N -0.584 5.584 9 Si 0.919 3.081 10 H -0.206 1.206 11 H -0.199 1.199 12 H -0.215 1.215 13 C -0.076 4.076 14 H 0.063 0.937 15 C -0.147 4.147 16 C -0.141 4.141 17 C -0.154 4.154 18 C -0.066 4.066 19 N -0.286 5.286 20 C -0.115 4.115 21 C -0.037 4.037 22 H 0.054 0.946 23 H 0.047 0.953 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.059 0.941 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.055 0.945 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.108 0.892 33 H 0.060 0.940 34 H 0.103 0.897 35 H 0.044 0.956 36 H 0.036 0.964 37 H 0.073 0.927 38 H 0.104 0.896 39 H 0.028 0.972 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 10.548 -2.209 -1.305 10.855 hybrid contribution 0.243 -0.219 -0.961 1.015 sum 10.790 -2.429 -2.266 11.290 Atomic orbital electron populations 1.21495 0.96993 0.99610 1.00195 1.21600 0.95283 0.98316 0.99109 1.19169 0.92118 0.92800 0.95858 0.96967 1.21955 1.29569 1.15942 0.93192 0.94991 1.26685 0.93352 0.97364 1.04550 1.70905 1.41018 1.45876 1.00559 0.83229 0.76755 0.75341 0.72810 1.20648 1.19916 1.21471 1.19887 0.96142 0.94756 0.96860 0.93682 1.20734 0.96662 1.00207 0.97115 1.21240 0.94357 0.96765 1.01696 1.21378 1.01333 0.95924 0.96790 1.22463 0.95845 0.97781 0.90470 1.60756 1.03720 1.47916 1.16171 1.22357 1.02375 0.91431 0.95308 1.21564 0.87569 0.97336 0.97246 0.94565 0.95257 0.92614 0.92942 0.94134 0.92931 0.92035 0.94451 0.91783 0.90717 0.89179 0.94025 0.89723 0.95554 0.96384 0.92745 0.89625 0.97215 0.92641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.45 9.79 71.98 0.70 -4.74 16 2 C -0.11 -4.55 5.13 30.60 0.16 -4.39 16 3 C 0.02 0.97 1.61 -11.54 -0.02 0.95 16 4 H 0.01 0.66 5.75 -2.38 -0.01 0.64 16 5 C -0.57 -30.63 5.52 25.60 0.14 -30.49 16 6 H 0.03 1.78 7.83 -2.92 -0.02 1.76 16 7 C -0.02 -1.19 5.35 84.65 0.45 -0.73 16 8 N -0.94 -56.34 13.65 21.45 0.29 -56.05 16 9 Si 1.09 50.67 29.91 68.60 2.05 52.72 16 10 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 11 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 12 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 13 C -0.06 -2.39 1.45 -12.65 -0.02 -2.41 16 14 H 0.04 2.00 8.08 -2.39 -0.02 1.98 16 15 C -0.11 -3.86 4.35 28.93 0.13 -3.74 16 16 C -0.10 -2.90 5.63 30.31 0.17 -2.73 16 17 C -0.12 -3.08 5.28 30.11 0.16 -2.92 16 18 C 0.06 1.71 5.44 86.41 0.47 2.18 16 19 N -0.56 -19.57 4.25 -922.46 -3.92 -23.49 16 20 C 0.03 1.04 9.29 127.69 1.19 2.23 16 21 C 0.09 3.85 4.71 87.12 0.41 4.26 16 22 H 0.04 1.77 7.21 -2.39 -0.02 1.75 16 23 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 24 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 25 H 0.05 2.01 6.08 -2.39 -0.01 2.00 16 26 H 0.04 1.73 8.14 -2.39 -0.02 1.72 16 27 H 0.26 15.63 6.31 -92.71 -0.58 15.04 16 28 H 0.06 2.08 5.93 -2.39 -0.01 2.07 16 29 H 0.04 1.37 7.59 -2.39 -0.02 1.35 16 30 H 0.06 1.89 7.78 -2.39 -0.02 1.88 16 31 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.04 1.23 6.66 -2.38 -0.02 1.22 16 34 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 35 H 0.03 0.72 8.02 -2.39 -0.02 0.70 16 36 H 0.02 0.55 8.14 -2.38 -0.02 0.53 16 37 H 0.05 1.87 7.99 -2.39 -0.02 1.85 16 38 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.01 0.42 6.79 -2.39 -0.02 0.40 16 40 H 0.06 2.73 5.80 -2.38 -0.01 2.72 16 Total: -1.00 -60.04 295.63 3.52 -56.52 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: 1.16 Total: 12.83 kcal Atomic # 6 Polarization: -46.47 SS G_CDS: 3.94 Total: -42.53 kcal Atomic # 7 Polarization: -75.92 SS G_CDS: -3.63 Total: -79.55 kcal Atomic # 14 Polarization: 50.67 SS G_CDS: 2.05 Total: 52.72 kcal Total: -60.04 3.52 -56.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260462538.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.537 kcal (2) G-P(sol) polarization free energy of solvation -60.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds