Wall clock time and date at job start Mon Mar 30 2020 02:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47142 * 2 1 4 4 N 1.46891 * 109.47259 * 120.00355 * 2 1 3 5 5 C 1.39784 * 111.00039 * 315.35088 * 4 2 1 6 6 C 1.54434 * 111.77287 * 189.13296 * 5 4 2 7 7 C 1.50755 * 109.01925 * 282.59501 * 6 5 4 8 8 C 1.54170 * 112.60959 * 93.01912 * 7 6 5 9 9 C 1.53812 * 111.97020 * 318.48020 * 8 7 6 10 10 C 1.47637 * 111.00374 * 84.24929 * 4 2 1 11 11 H 1.09000 * 109.74445 * 270.03020 * 10 4 2 12 12 C 1.53001 * 109.74353 * 30.70675 * 10 4 2 13 13 C 1.50702 * 109.46985 * 278.10276 * 12 10 4 14 14 H 1.07990 * 120.00423 * 356.61996 * 13 12 10 15 15 C 1.37881 * 119.99455 * 176.61195 * 13 12 10 16 16 N 1.31516 * 120.00212 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99836 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47237 * 270.00231 * 17 15 13 19 19 H 1.48495 * 109.47155 * 149.99741 * 17 15 13 20 20 H 1.48505 * 109.46906 * 29.99673 * 17 15 13 21 21 H 1.09000 * 109.46813 * 315.56433 * 1 2 3 22 22 H 1.09004 * 109.47459 * 75.56775 * 1 2 3 23 23 H 1.09002 * 109.47096 * 195.56490 * 1 2 3 24 24 H 1.09001 * 109.46555 * 240.00350 * 2 1 3 25 25 H 1.08995 * 109.47029 * 172.03934 * 3 2 1 26 26 H 1.09005 * 109.47199 * 292.03297 * 3 2 1 27 27 H 1.08997 * 109.47067 * 52.03354 * 3 2 1 28 28 H 1.09003 * 109.01803 * 309.72200 * 5 4 2 29 29 H 1.09003 * 109.01592 * 68.61763 * 5 4 2 30 30 H 1.08998 * 109.54646 * 42.45656 * 6 5 4 31 31 H 1.08994 * 109.54656 * 162.73512 * 6 5 4 32 32 H 1.09007 * 108.85070 * 213.82032 * 7 6 5 33 33 H 1.08999 * 108.85855 * 332.20655 * 7 6 5 34 34 H 1.09002 * 108.97970 * 79.12580 * 8 7 6 35 35 H 1.09003 * 108.98121 * 197.83626 * 8 7 6 36 36 H 1.08999 * 109.05062 * 198.48402 * 9 8 7 37 37 H 1.09006 * 109.05390 * 79.59251 * 9 8 7 38 38 H 1.09005 * 109.46584 * 158.10577 * 12 10 4 39 39 H 1.09000 * 109.47178 * 38.11184 * 12 10 4 40 40 H 0.96996 * 119.99879 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 1.3114 -0.2892 2.3349 6 6 1.9530 -0.8290 3.6319 7 6 1.5901 -2.2835 3.7911 8 6 2.6492 -3.2280 3.1885 9 6 3.1760 -2.7147 1.8376 10 6 2.0659 -2.1526 0.9855 11 1 1.1149 -2.5978 1.2777 12 6 2.3446 -2.4504 -0.4891 13 6 1.0602 -2.3574 -1.2719 14 1 0.1289 -2.1645 -0.7604 15 6 1.0743 -2.5185 -2.6412 16 7 2.2084 -2.7537 -3.2641 17 14 -0.5177 -2.4025 -3.6116 18 1 -1.1373 -3.7485 -3.7089 19 1 -0.2298 -1.8903 -4.9754 20 1 -1.4515 -1.4764 -2.9218 21 1 -0.3633 0.7338 0.7195 22 1 -0.3634 0.2561 -0.9952 23 1 -0.3633 -0.9900 0.2758 24 1 1.8933 -0.5138 -0.8901 25 1 3.1206 1.4457 0.1423 26 1 1.7976 1.9135 -0.9526 27 1 1.5651 1.9957 0.8102 28 1 1.2933 0.7999 2.3741 29 1 0.2884 -0.6591 2.2654 30 1 3.0366 -0.7279 3.5721 31 1 1.5793 -0.2643 4.4860 32 1 1.4834 -2.5057 4.8530 33 1 0.6352 -2.4644 3.2977 34 1 3.4835 -3.3151 3.8845 35 1 2.2051 -4.2130 3.0448 36 1 3.6512 -3.5384 1.3049 37 1 3.9162 -1.9350 2.0174 38 1 2.7568 -3.4550 -0.5852 39 1 3.0601 -1.7255 -0.8773 40 1 3.0351 -2.8136 -2.7602 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260543325.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:56 Heat of formation + Delta-G solvation = -22.602431 kcal Electronic energy + Delta-G solvation = -17358.981643 eV Core-core repulsion = 14979.576895 eV Total energy + Delta-G solvation = -2379.404749 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.14118 -36.70230 -35.72245 -33.50643 -32.06815 -29.55284 -28.03863 -26.67423 -25.70405 -23.69699 -22.70254 -20.29911 -19.74504 -18.88415 -17.22518 -16.62718 -15.79550 -15.68676 -15.55507 -15.17939 -15.00855 -14.24090 -13.86008 -13.80207 -13.30521 -13.13016 -12.97802 -12.88818 -12.69495 -12.55081 -12.38991 -12.02087 -11.97129 -11.84444 -11.47320 -11.19994 -11.16602 -11.11440 -10.87493 -10.49084 -10.41414 -8.87650 -8.55415 -6.22728 1.49999 1.57299 1.73912 2.56865 3.14466 3.26442 3.91790 3.94247 4.07013 4.25089 4.33269 4.36792 4.39413 4.50552 4.57170 4.72597 4.75829 4.80383 4.85117 4.93865 4.95724 5.01484 5.02468 5.14434 5.18526 5.24204 5.29866 5.31208 5.36893 5.44003 5.50675 5.57971 5.63879 5.72029 6.08921 6.29728 6.48152 6.67954 6.89027 7.51546 8.82855 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.028940 B = 0.010138 C = 0.008843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.273450 B = 2761.234176 C = 3165.713094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.059 3.941 3 C -0.130 4.130 4 N -0.539 5.539 5 C 0.071 3.929 6 C -0.111 4.111 7 C -0.116 4.116 8 C -0.111 4.111 9 C -0.110 4.110 10 C 0.119 3.881 11 H 0.021 0.979 12 C 0.013 3.987 13 C -0.586 4.586 14 H 0.060 0.940 15 C -0.035 4.035 16 N -0.943 5.943 17 Si 1.102 2.898 18 H -0.279 1.279 19 H -0.286 1.286 20 H -0.268 1.268 21 H 0.055 0.945 22 H 0.041 0.959 23 H 0.039 0.961 24 H 0.093 0.907 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.074 0.926 29 H 0.006 0.994 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.038 0.962 34 H 0.075 0.925 35 H 0.050 0.950 36 H 0.044 0.956 37 H 0.068 0.932 38 H -0.016 1.016 39 H 0.001 0.999 40 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.902 5.123 12.845 13.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.049 4.049 3 C -0.187 4.187 4 N -0.263 5.263 5 C -0.059 4.059 6 C -0.148 4.148 7 C -0.154 4.154 8 C -0.148 4.148 9 C -0.148 4.148 10 C 0.012 3.988 11 H 0.039 0.961 12 C -0.024 4.024 13 C -0.624 4.624 14 H 0.078 0.922 15 C -0.232 4.232 16 N -0.582 5.582 17 Si 0.925 3.075 18 H -0.205 1.205 19 H -0.212 1.212 20 H -0.192 1.192 21 H 0.074 0.926 22 H 0.060 0.940 23 H 0.058 0.942 24 H 0.111 0.889 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.092 0.908 29 H 0.024 0.976 30 H 0.087 0.913 31 H 0.103 0.897 32 H 0.096 0.904 33 H 0.057 0.943 34 H 0.093 0.907 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.087 0.913 38 H 0.002 0.998 39 H 0.019 0.981 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.098 5.167 11.437 12.724 hybrid contribution 0.008 -0.538 0.903 1.051 sum -2.090 4.629 12.340 13.345 Atomic orbital electron populations 1.22243 0.97792 1.00003 1.00521 1.22043 0.93049 0.94964 0.94806 1.21776 1.00926 0.94906 1.01130 1.59186 1.57051 1.06783 1.03302 1.21062 0.94134 1.00006 0.90678 1.21467 1.01529 0.95503 0.96335 1.21382 0.97943 0.95228 1.00837 1.21868 0.99012 0.98282 0.95670 1.21479 0.98068 0.99629 0.95650 1.21040 0.96260 0.86852 0.94635 0.96082 1.19478 0.96357 0.93671 0.92941 1.22520 0.94686 1.50835 0.94399 0.92193 1.26983 1.05098 0.93751 0.97394 1.70868 0.99389 1.48340 1.39583 0.83120 0.71932 0.77474 0.74942 1.20532 1.21234 1.19230 0.92616 0.93966 0.94232 0.88910 0.92936 0.92807 0.92065 0.90789 0.97639 0.91291 0.89715 0.90423 0.94299 0.90676 0.93076 0.93712 0.91349 0.99752 0.98135 0.93547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.64 6.63 71.98 0.48 -5.16 16 2 C 0.06 2.35 2.20 44.92 0.10 2.45 16 3 C -0.13 -4.28 9.12 71.98 0.66 -3.62 16 4 N -0.54 -20.18 3.79 -862.66 -3.27 -23.45 16 5 C 0.07 2.20 3.88 88.07 0.34 2.54 16 6 C -0.11 -2.81 5.65 30.35 0.17 -2.64 16 7 C -0.12 -3.02 5.31 30.26 0.16 -2.86 16 8 C -0.11 -3.12 5.91 31.26 0.18 -2.94 16 9 C -0.11 -3.90 4.98 30.16 0.15 -3.75 16 10 C 0.12 4.97 1.62 44.06 0.07 5.05 16 11 H 0.02 0.95 6.43 -2.39 -0.02 0.93 16 12 C 0.01 0.64 3.35 29.85 0.10 0.74 16 13 C -0.59 -31.81 5.92 25.60 0.15 -31.66 16 14 H 0.06 3.20 4.78 -2.92 -0.01 3.19 16 15 C -0.03 -1.98 5.46 84.66 0.46 -1.51 16 16 N -0.94 -58.02 13.65 21.45 0.29 -57.73 16 17 Si 1.10 50.50 29.90 68.60 2.05 52.55 16 18 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 19 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 20 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 21 H 0.05 1.80 7.33 -2.39 -0.02 1.78 16 22 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 23 H 0.04 1.66 5.42 -2.39 -0.01 1.65 16 24 H 0.09 4.61 3.80 -2.39 -0.01 4.60 16 25 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 27 H 0.06 1.73 6.84 -2.39 -0.02 1.71 16 28 H 0.07 2.10 6.52 -2.39 -0.02 2.09 16 29 H 0.01 0.19 6.10 -2.39 -0.01 0.18 16 30 H 0.07 1.82 7.11 -2.39 -0.02 1.80 16 31 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 33 H 0.04 1.15 6.58 -2.39 -0.02 1.13 16 34 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.04 1.67 7.36 -2.39 -0.02 1.66 16 37 H 0.07 2.37 7.26 -2.38 -0.02 2.36 16 38 H -0.02 -0.87 7.51 -2.38 -0.02 -0.89 16 39 H 0.00 0.03 6.61 -2.39 -0.02 0.01 16 40 H 0.25 15.97 7.21 -92.71 -0.67 15.30 16 Total: -1.00 -60.73 282.52 3.20 -57.53 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: 1.10 Total: 14.46 kcal Atomic # 6 Polarization: -46.40 SS G_CDS: 3.03 Total: -43.37 kcal Atomic # 7 Polarization: -78.20 SS G_CDS: -2.98 Total: -81.18 kcal Atomic # 14 Polarization: 50.50 SS G_CDS: 2.05 Total: 52.55 kcal Total: -60.73 3.20 -57.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260543325.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.932 kcal (2) G-P(sol) polarization free energy of solvation -60.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds