Wall clock time and date at job start Mon Mar 30 2020 02:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46969 * 2 1 4 4 N 1.46895 * 109.47031 * 120.00085 * 2 1 3 5 5 C 1.47628 * 110.99981 * 300.74990 * 4 2 1 6 6 C 1.50819 * 108.04356 * 150.32360 * 5 4 2 7 7 C 1.53822 * 111.62019 * 95.06363 * 6 5 4 8 8 C 1.54178 * 111.96886 * 319.04085 * 7 6 5 9 9 C 1.50628 * 112.56189 * 318.51074 * 8 7 6 10 10 C 1.39780 * 111.00353 * 171.84554 * 4 2 1 11 11 H 1.09000 * 109.01824 * 68.54945 * 10 4 2 12 12 C 1.53002 * 109.02247 * 309.65024 * 10 4 2 13 13 C 1.50695 * 109.46620 * 303.90368 * 12 10 4 14 14 H 1.07999 * 120.00618 * 4.81192 * 13 12 10 15 15 C 1.37882 * 119.99843 * 184.80682 * 13 12 10 16 16 N 1.31517 * 119.99669 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00100 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47461 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47119 * 120.00521 * 17 15 13 20 20 H 1.48504 * 109.47338 * 240.00043 * 17 15 13 21 21 H 1.08992 * 109.47345 * 306.96219 * 1 2 3 22 22 H 1.08999 * 109.46999 * 66.96405 * 1 2 3 23 23 H 1.09004 * 109.47473 * 186.95521 * 1 2 3 24 24 H 1.09003 * 109.47385 * 239.99846 * 2 1 3 25 25 H 1.09000 * 109.46744 * 184.76658 * 3 2 1 26 26 H 1.08994 * 109.47159 * 304.76751 * 3 2 1 27 27 H 1.08997 * 109.46679 * 64.77231 * 3 2 1 28 28 H 1.09006 * 109.74951 * 269.95664 * 5 4 2 29 29 H 1.08997 * 109.74766 * 30.68561 * 5 4 2 30 30 H 1.08999 * 109.05002 * 215.61153 * 6 5 4 31 31 H 1.08998 * 109.05274 * 334.51269 * 6 5 4 32 32 H 1.08994 * 108.98424 * 79.68313 * 7 6 5 33 33 H 1.09003 * 108.98274 * 198.40361 * 7 6 5 34 34 H 1.09005 * 108.84760 * 79.29421 * 8 7 6 35 35 H 1.08999 * 108.85535 * 197.78498 * 8 7 6 36 36 H 1.09006 * 109.59295 * 333.14118 * 9 8 7 37 37 H 1.08998 * 109.43543 * 212.91035 * 9 8 7 38 38 H 1.09000 * 109.47101 * 63.90555 * 12 10 4 39 39 H 1.08995 * 109.46865 * 183.90577 * 12 10 4 40 40 H 0.97005 * 119.99701 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1994 5 6 1.5316 -0.0336 2.4270 6 6 1.4048 -1.0837 3.5021 7 6 2.6608 -1.1422 4.3882 8 6 3.9559 -1.0072 3.5626 9 6 3.9070 -1.7924 2.2781 10 6 3.4045 -0.8737 1.1430 11 1 3.8935 0.0967 1.2287 12 6 3.7712 -1.4993 -0.2042 13 6 3.0046 -2.7838 -0.3867 14 1 2.2671 -3.0811 0.3441 15 6 3.2448 -3.5795 -1.4869 16 7 4.1432 -3.2177 -2.3766 17 14 2.2952 -5.1722 -1.7128 18 1 1.3506 -5.3502 -0.5809 19 1 1.5352 -5.1188 -2.9875 20 1 3.2445 -6.3136 -1.7500 21 1 -0.3633 0.6179 0.8211 22 1 -0.3633 0.4021 -0.9457 23 1 -0.3634 -1.0201 0.1244 24 1 1.8934 -0.5139 -0.8900 25 1 3.1266 1.4437 -0.0854 26 1 1.6086 1.9804 -0.8442 27 1 1.7481 1.9310 0.9296 28 1 2.2415 0.7315 2.7415 29 1 0.5587 0.4206 2.2393 30 1 0.5406 -0.8529 4.1248 31 1 1.2545 -2.0563 3.0334 32 1 2.6188 -0.3326 5.1167 33 1 2.6763 -2.0942 4.9189 34 1 4.1151 0.0450 3.3266 35 1 4.7940 -1.3643 4.1611 36 1 3.2271 -2.6369 2.3916 37 1 4.9057 -2.1565 2.0373 38 1 3.5172 -0.8073 -1.0073 39 1 4.8407 -1.7077 -0.2289 40 1 4.3124 -3.7777 -3.1504 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260543328.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:59 Heat of formation + Delta-G solvation = -6.657623 kcal Electronic energy + Delta-G solvation = -17243.835020 eV Core-core repulsion = 14865.121690 eV Total energy + Delta-G solvation = -2378.713330 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.52849 -35.17211 -33.50820 -31.70207 -30.50094 -27.73512 -26.73335 -25.42014 -24.14301 -21.95753 -20.81862 -18.98948 -18.18444 -16.34427 -15.55982 -14.76792 -14.45778 -14.13989 -14.02688 -13.61551 -13.42854 -12.48469 -12.40383 -12.11495 -11.70596 -11.64350 -11.42163 -11.33136 -11.13159 -10.85665 -10.71526 -10.63041 -10.38128 -10.11193 -9.99133 -9.83656 -9.78827 -9.53516 -8.98886 -8.78646 -8.20998 -7.16837 -5.85707 -3.82789 3.39302 3.47388 3.52863 4.58312 4.70122 5.24993 5.28834 5.40211 5.51400 5.54960 5.70970 5.73181 5.81337 5.90064 5.94876 6.05181 6.13975 6.17740 6.19815 6.24648 6.32448 6.43883 6.44919 6.50285 6.57671 6.62647 6.74600 6.83203 6.92962 7.05619 7.10618 7.27015 7.70081 7.76872 8.11064 8.18768 8.43928 8.69422 9.26728 9.79429 11.26317 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.023794 B = 0.010521 C = 0.009191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.484167 B = 2660.650179 C = 3045.842021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.075 3.925 3 C -0.180 4.180 4 N -0.519 5.519 5 C 0.059 3.941 6 C -0.116 4.116 7 C -0.113 4.113 8 C -0.120 4.120 9 C -0.100 4.100 10 C 0.112 3.888 11 H -0.003 1.003 12 C 0.019 3.981 13 C -0.482 4.482 14 H 0.068 0.932 15 C 0.049 3.951 16 N -0.905 5.905 17 Si 0.886 3.114 18 H -0.273 1.273 19 H -0.288 1.288 20 H -0.289 1.289 21 H 0.042 0.958 22 H 0.049 0.951 23 H 0.063 0.937 24 H 0.114 0.886 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.044 0.956 28 H 0.028 0.972 29 H 0.068 0.932 30 H 0.049 0.951 31 H 0.078 0.922 32 H 0.047 0.953 33 H 0.053 0.947 34 H 0.049 0.951 35 H 0.048 0.952 36 H 0.075 0.925 37 H 0.060 0.940 38 H 0.015 0.985 39 H 0.019 0.981 40 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.577 6.696 9.189 12.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.033 4.033 3 C -0.239 4.239 4 N -0.242 5.242 5 C -0.068 4.068 6 C -0.154 4.154 7 C -0.151 4.151 8 C -0.158 4.158 9 C -0.138 4.138 10 C 0.002 3.998 11 H 0.015 0.985 12 C -0.018 4.018 13 C -0.521 4.521 14 H 0.086 0.914 15 C -0.150 4.150 16 N -0.546 5.546 17 Si 0.715 3.285 18 H -0.197 1.197 19 H -0.215 1.215 20 H -0.215 1.215 21 H 0.061 0.939 22 H 0.068 0.932 23 H 0.082 0.918 24 H 0.131 0.869 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.047 0.953 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.097 0.903 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.094 0.906 37 H 0.079 0.921 38 H 0.033 0.967 39 H 0.037 0.963 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.668 6.189 9.056 11.920 hybrid contribution -0.021 -0.084 -0.217 0.234 sum -4.689 6.105 8.839 11.721 Atomic orbital electron populations 1.21866 0.95906 1.01944 0.99964 1.21818 0.94274 0.91275 0.95884 1.22463 1.01629 0.99158 1.00688 1.58866 1.14138 1.50778 1.00452 1.21815 0.99253 0.94908 0.90868 1.21403 0.96186 1.01447 0.96395 1.21881 0.95101 1.00509 0.97563 1.21478 0.96480 1.00324 0.97505 1.21344 1.01314 0.98813 0.92361 1.20524 0.86093 0.94655 0.98515 0.98503 1.19452 0.96830 0.95989 0.89482 1.21242 1.20102 1.04275 1.06451 0.91417 1.25038 0.95567 0.97921 0.96512 1.69984 1.34049 1.38277 1.12269 0.86628 0.79948 0.84148 0.77821 1.19738 1.21488 1.21537 0.93858 0.93233 0.91802 0.86856 0.92771 0.93035 0.93677 0.95346 0.91413 0.93212 0.90286 0.93464 0.92812 0.93219 0.93319 0.90630 0.92109 0.96673 0.96279 0.93500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 8.87 37.16 0.33 -1.89 16 2 C 0.08 1.39 2.31 -67.71 -0.16 1.23 16 3 C -0.18 -2.94 8.67 37.16 0.32 -2.62 16 4 N -0.52 -9.80 3.02 -223.71 -0.67 -10.47 16 5 C 0.06 0.93 3.84 -4.52 -0.02 0.91 16 6 C -0.12 -1.73 5.41 -27.40 -0.15 -1.88 16 7 C -0.11 -1.58 5.91 -25.69 -0.15 -1.74 16 8 C -0.12 -1.88 5.31 -27.30 -0.15 -2.03 16 9 C -0.10 -1.92 4.51 -27.17 -0.12 -2.04 16 10 C 0.11 2.30 1.37 -70.63 -0.10 2.20 16 11 H 0.00 -0.05 6.30 -51.93 -0.33 -0.38 16 12 C 0.02 0.49 4.09 -27.88 -0.11 0.37 16 13 C -0.48 -13.05 7.51 -34.44 -0.26 -13.31 16 14 H 0.07 1.85 7.14 -52.49 -0.37 1.47 16 15 C 0.05 1.38 5.46 -17.82 -0.10 1.28 16 16 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16 17 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 18 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 20 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 21 H 0.04 0.61 6.26 -51.93 -0.33 0.28 16 22 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 24 H 0.11 2.53 5.17 -51.93 -0.27 2.26 16 25 H 0.05 0.95 7.01 -51.93 -0.36 0.58 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.04 0.67 6.90 -51.93 -0.36 0.31 16 28 H 0.03 0.45 6.45 -51.93 -0.33 0.12 16 29 H 0.07 1.00 5.53 -51.93 -0.29 0.71 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 1.35 7.26 -51.93 -0.38 0.97 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.05 0.78 6.58 -51.93 -0.34 0.44 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.08 1.55 6.72 -51.93 -0.35 1.20 16 37 H 0.06 1.21 7.93 -51.93 -0.41 0.80 16 38 H 0.02 0.40 6.18 -51.93 -0.32 0.08 16 39 H 0.02 0.52 8.02 -51.93 -0.42 0.10 16 40 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 289.18 15.07 4.36 4.36 Total: -1.00 -28.34 289.18 -8.21 -36.55 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -6.95 Total: -1.55 kcal Atomic # 6 Polarization: -18.84 SS G_CDS: -0.66 Total: -19.50 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: 0.06 Total: -36.74 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -28.34 -8.21 -36.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260543328.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.889 kcal (2) G-P(sol) polarization free energy of solvation -28.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds