Wall clock time and date at job start Mon Mar 30 2020 02:54:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.53001 * 109.46969 * 2 1
4 4 N 1.46895 * 109.47031 * 120.00085 * 2 1 3
5 5 C 1.47628 * 110.99981 * 300.74990 * 4 2 1
6 6 C 1.50819 * 108.04356 * 150.32360 * 5 4 2
7 7 C 1.53822 * 111.62019 * 95.06363 * 6 5 4
8 8 C 1.54178 * 111.96886 * 319.04085 * 7 6 5
9 9 C 1.50628 * 112.56189 * 318.51074 * 8 7 6
10 10 C 1.39780 * 111.00353 * 171.84554 * 4 2 1
11 11 H 1.09000 * 109.01824 * 68.54945 * 10 4 2
12 12 C 1.53002 * 109.02247 * 309.65024 * 10 4 2
13 13 C 1.50695 * 109.46620 * 303.90368 * 12 10 4
14 14 H 1.07999 * 120.00618 * 4.81192 * 13 12 10
15 15 C 1.37882 * 119.99843 * 184.80682 * 13 12 10
16 16 N 1.31517 * 119.99669 * 0.02562 * 15 13 12
17 17 Si 1.86796 * 120.00100 * 179.97438 * 15 13 12
18 18 H 1.48500 * 109.47461 * 0.02562 * 17 15 13
19 19 H 1.48501 * 109.47119 * 120.00521 * 17 15 13
20 20 H 1.48504 * 109.47338 * 240.00043 * 17 15 13
21 21 H 1.08992 * 109.47345 * 306.96219 * 1 2 3
22 22 H 1.08999 * 109.46999 * 66.96405 * 1 2 3
23 23 H 1.09004 * 109.47473 * 186.95521 * 1 2 3
24 24 H 1.09003 * 109.47385 * 239.99846 * 2 1 3
25 25 H 1.09000 * 109.46744 * 184.76658 * 3 2 1
26 26 H 1.08994 * 109.47159 * 304.76751 * 3 2 1
27 27 H 1.08997 * 109.46679 * 64.77231 * 3 2 1
28 28 H 1.09006 * 109.74951 * 269.95664 * 5 4 2
29 29 H 1.08997 * 109.74766 * 30.68561 * 5 4 2
30 30 H 1.08999 * 109.05002 * 215.61153 * 6 5 4
31 31 H 1.08998 * 109.05274 * 334.51269 * 6 5 4
32 32 H 1.08994 * 108.98424 * 79.68313 * 7 6 5
33 33 H 1.09003 * 108.98274 * 198.40361 * 7 6 5
34 34 H 1.09005 * 108.84760 * 79.29421 * 8 7 6
35 35 H 1.08999 * 108.85535 * 197.78498 * 8 7 6
36 36 H 1.09006 * 109.59295 * 333.14118 * 9 8 7
37 37 H 1.08998 * 109.43543 * 212.91035 * 9 8 7
38 38 H 1.09000 * 109.47101 * 63.90555 * 12 10 4
39 39 H 1.08995 * 109.46865 * 183.90577 * 12 10 4
40 40 H 0.97005 * 119.99701 * 179.97438 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 7 2.0196 -0.6925 1.1994
5 6 1.5316 -0.0336 2.4270
6 6 1.4048 -1.0837 3.5021
7 6 2.6608 -1.1422 4.3882
8 6 3.9559 -1.0072 3.5626
9 6 3.9070 -1.7924 2.2781
10 6 3.4045 -0.8737 1.1430
11 1 3.8935 0.0967 1.2287
12 6 3.7712 -1.4993 -0.2042
13 6 3.0046 -2.7838 -0.3867
14 1 2.2671 -3.0811 0.3441
15 6 3.2448 -3.5795 -1.4869
16 7 4.1432 -3.2177 -2.3766
17 14 2.2952 -5.1722 -1.7128
18 1 1.3506 -5.3502 -0.5809
19 1 1.5352 -5.1188 -2.9875
20 1 3.2445 -6.3136 -1.7500
21 1 -0.3633 0.6179 0.8211
22 1 -0.3633 0.4021 -0.9457
23 1 -0.3634 -1.0201 0.1244
24 1 1.8934 -0.5139 -0.8900
25 1 3.1266 1.4437 -0.0854
26 1 1.6086 1.9804 -0.8442
27 1 1.7481 1.9310 0.9296
28 1 2.2415 0.7315 2.7415
29 1 0.5587 0.4206 2.2393
30 1 0.5406 -0.8529 4.1248
31 1 1.2545 -2.0563 3.0334
32 1 2.6188 -0.3326 5.1167
33 1 2.6763 -2.0942 4.9189
34 1 4.1151 0.0450 3.3266
35 1 4.7940 -1.3643 4.1611
36 1 3.2271 -2.6369 2.3916
37 1 4.9057 -2.1565 2.0373
38 1 3.5172 -0.8073 -1.0073
39 1 4.8407 -1.7077 -0.2289
40 1 4.3124 -3.7777 -3.1504
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260543328.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:54:59
Heat of formation + Delta-G solvation = -6.657623 kcal
Electronic energy + Delta-G solvation = -17243.835020 eV
Core-core repulsion = 14865.121690 eV
Total energy + Delta-G solvation = -2378.713330 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 225.179 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-39.52849 -35.17211 -33.50820 -31.70207 -30.50094 -27.73512 -26.73335 -25.42014
-24.14301 -21.95753 -20.81862 -18.98948 -18.18444 -16.34427 -15.55982 -14.76792
-14.45778 -14.13989 -14.02688 -13.61551 -13.42854 -12.48469 -12.40383 -12.11495
-11.70596 -11.64350 -11.42163 -11.33136 -11.13159 -10.85665 -10.71526 -10.63041
-10.38128 -10.11193 -9.99133 -9.83656 -9.78827 -9.53516 -8.98886 -8.78646
-8.20998 -7.16837 -5.85707 -3.82789 3.39302 3.47388 3.52863 4.58312
4.70122 5.24993 5.28834 5.40211 5.51400 5.54960 5.70970 5.73181
5.81337 5.90064 5.94876 6.05181 6.13975 6.17740 6.19815 6.24648
6.32448 6.43883 6.44919 6.50285 6.57671 6.62647 6.74600 6.83203
6.92962 7.05619 7.10618 7.27015 7.70081 7.76872 8.11064 8.18768
8.43928 8.69422 9.26728 9.79429 11.26317
Molecular weight = 225.18amu
Principal moments of inertia in cm(-1)
A = 0.023794 B = 0.010521 C = 0.009191
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1176.484167 B = 2660.650179 C = 3045.842021
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C 0.075 3.925
3 C -0.180 4.180
4 N -0.519 5.519
5 C 0.059 3.941
6 C -0.116 4.116
7 C -0.113 4.113
8 C -0.120 4.120
9 C -0.100 4.100
10 C 0.112 3.888
11 H -0.003 1.003
12 C 0.019 3.981
13 C -0.482 4.482
14 H 0.068 0.932
15 C 0.049 3.951
16 N -0.905 5.905
17 Si 0.886 3.114
18 H -0.273 1.273
19 H -0.288 1.288
20 H -0.289 1.289
21 H 0.042 0.958
22 H 0.049 0.951
23 H 0.063 0.937
24 H 0.114 0.886
25 H 0.053 0.947
26 H 0.051 0.949
27 H 0.044 0.956
28 H 0.028 0.972
29 H 0.068 0.932
30 H 0.049 0.951
31 H 0.078 0.922
32 H 0.047 0.953
33 H 0.053 0.947
34 H 0.049 0.951
35 H 0.048 0.952
36 H 0.075 0.925
37 H 0.060 0.940
38 H 0.015 0.985
39 H 0.019 0.981
40 H 0.255 0.745
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.577 6.696 9.189 12.257
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.033 4.033
3 C -0.239 4.239
4 N -0.242 5.242
5 C -0.068 4.068
6 C -0.154 4.154
7 C -0.151 4.151
8 C -0.158 4.158
9 C -0.138 4.138
10 C 0.002 3.998
11 H 0.015 0.985
12 C -0.018 4.018
13 C -0.521 4.521
14 H 0.086 0.914
15 C -0.150 4.150
16 N -0.546 5.546
17 Si 0.715 3.285
18 H -0.197 1.197
19 H -0.215 1.215
20 H -0.215 1.215
21 H 0.061 0.939
22 H 0.068 0.932
23 H 0.082 0.918
24 H 0.131 0.869
25 H 0.072 0.928
26 H 0.070 0.930
27 H 0.063 0.937
28 H 0.047 0.953
29 H 0.086 0.914
30 H 0.068 0.932
31 H 0.097 0.903
32 H 0.065 0.935
33 H 0.072 0.928
34 H 0.068 0.932
35 H 0.067 0.933
36 H 0.094 0.906
37 H 0.079 0.921
38 H 0.033 0.967
39 H 0.037 0.963
40 H 0.065 0.935
Dipole moment (debyes) X Y Z Total
from point charges -4.668 6.189 9.056 11.920
hybrid contribution -0.021 -0.084 -0.217 0.234
sum -4.689 6.105 8.839 11.721
Atomic orbital electron populations
1.21866 0.95906 1.01944 0.99964 1.21818 0.94274 0.91275 0.95884
1.22463 1.01629 0.99158 1.00688 1.58866 1.14138 1.50778 1.00452
1.21815 0.99253 0.94908 0.90868 1.21403 0.96186 1.01447 0.96395
1.21881 0.95101 1.00509 0.97563 1.21478 0.96480 1.00324 0.97505
1.21344 1.01314 0.98813 0.92361 1.20524 0.86093 0.94655 0.98515
0.98503 1.19452 0.96830 0.95989 0.89482 1.21242 1.20102 1.04275
1.06451 0.91417 1.25038 0.95567 0.97921 0.96512 1.69984 1.34049
1.38277 1.12269 0.86628 0.79948 0.84148 0.77821 1.19738 1.21488
1.21537 0.93858 0.93233 0.91802 0.86856 0.92771 0.93035 0.93677
0.95346 0.91413 0.93212 0.90286 0.93464 0.92812 0.93219 0.93319
0.90630 0.92109 0.96673 0.96279 0.93500
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.22 8.87 37.16 0.33 -1.89 16
2 C 0.08 1.39 2.31 -67.71 -0.16 1.23 16
3 C -0.18 -2.94 8.67 37.16 0.32 -2.62 16
4 N -0.52 -9.80 3.02 -223.71 -0.67 -10.47 16
5 C 0.06 0.93 3.84 -4.52 -0.02 0.91 16
6 C -0.12 -1.73 5.41 -27.40 -0.15 -1.88 16
7 C -0.11 -1.58 5.91 -25.69 -0.15 -1.74 16
8 C -0.12 -1.88 5.31 -27.30 -0.15 -2.03 16
9 C -0.10 -1.92 4.51 -27.17 -0.12 -2.04 16
10 C 0.11 2.30 1.37 -70.63 -0.10 2.20 16
11 H 0.00 -0.05 6.30 -51.93 -0.33 -0.38 16
12 C 0.02 0.49 4.09 -27.88 -0.11 0.37 16
13 C -0.48 -13.05 7.51 -34.44 -0.26 -13.31 16
14 H 0.07 1.85 7.14 -52.49 -0.37 1.47 16
15 C 0.05 1.38 5.46 -17.82 -0.10 1.28 16
16 N -0.90 -27.00 13.29 55.43 0.74 -26.26 16
17 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16
18 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16
19 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16
20 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16
21 H 0.04 0.61 6.26 -51.93 -0.33 0.28 16
22 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16
23 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16
24 H 0.11 2.53 5.17 -51.93 -0.27 2.26 16
25 H 0.05 0.95 7.01 -51.93 -0.36 0.58 16
26 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16
27 H 0.04 0.67 6.90 -51.93 -0.36 0.31 16
28 H 0.03 0.45 6.45 -51.93 -0.33 0.12 16
29 H 0.07 1.00 5.53 -51.93 -0.29 0.71 16
30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16
31 H 0.08 1.35 7.26 -51.93 -0.38 0.97 16
32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16
33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16
34 H 0.05 0.78 6.58 -51.93 -0.34 0.44 16
35 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16
36 H 0.08 1.55 6.72 -51.93 -0.35 1.20 16
37 H 0.06 1.21 7.93 -51.93 -0.41 0.80 16
38 H 0.02 0.40 6.18 -51.93 -0.32 0.08 16
39 H 0.02 0.52 8.02 -51.93 -0.42 0.10 16
40 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16
LS Contribution 289.18 15.07 4.36 4.36
Total: -1.00 -28.34 289.18 -8.21 -36.55
By element:
Atomic # 1 Polarization: 5.40 SS G_CDS: -6.95 Total: -1.55 kcal
Atomic # 6 Polarization: -18.84 SS G_CDS: -0.66 Total: -19.50 kcal
Atomic # 7 Polarization: -36.80 SS G_CDS: 0.06 Total: -36.74 kcal
Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal
Total LS contribution 4.36 Total: 4.36 kcal
Total: -28.34 -8.21 -36.55 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260543328.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 29.889 kcal
(2) G-P(sol) polarization free energy of solvation -28.338 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.551 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.209 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.547 kcal
(6) G-S(sol) free energy of system = (1) + (5) -6.658 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds