Wall clock time and date at job start Mon Mar 30 2020 02:54:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.53001 * 109.46969 * 2 1
4 4 N 1.46895 * 109.47031 * 120.00085 * 2 1 3
5 5 C 1.47628 * 110.99981 * 300.74990 * 4 2 1
6 6 C 1.50819 * 108.04356 * 150.32360 * 5 4 2
7 7 C 1.53822 * 111.62019 * 95.06363 * 6 5 4
8 8 C 1.54178 * 111.96886 * 319.04085 * 7 6 5
9 9 C 1.50628 * 112.56189 * 318.51074 * 8 7 6
10 10 C 1.39780 * 111.00353 * 171.84554 * 4 2 1
11 11 H 1.09000 * 109.01824 * 68.54945 * 10 4 2
12 12 C 1.53002 * 109.02247 * 309.65024 * 10 4 2
13 13 C 1.50695 * 109.46620 * 303.90368 * 12 10 4
14 14 H 1.07999 * 120.00618 * 4.81192 * 13 12 10
15 15 C 1.37882 * 119.99843 * 184.80682 * 13 12 10
16 16 N 1.31517 * 119.99669 * 0.02562 * 15 13 12
17 17 Si 1.86796 * 120.00100 * 179.97438 * 15 13 12
18 18 H 1.48500 * 109.47461 * 0.02562 * 17 15 13
19 19 H 1.48501 * 109.47119 * 120.00521 * 17 15 13
20 20 H 1.48504 * 109.47338 * 240.00043 * 17 15 13
21 21 H 1.08992 * 109.47345 * 306.96219 * 1 2 3
22 22 H 1.08999 * 109.46999 * 66.96405 * 1 2 3
23 23 H 1.09004 * 109.47473 * 186.95521 * 1 2 3
24 24 H 1.09003 * 109.47385 * 239.99846 * 2 1 3
25 25 H 1.09000 * 109.46744 * 184.76658 * 3 2 1
26 26 H 1.08994 * 109.47159 * 304.76751 * 3 2 1
27 27 H 1.08997 * 109.46679 * 64.77231 * 3 2 1
28 28 H 1.09006 * 109.74951 * 269.95664 * 5 4 2
29 29 H 1.08997 * 109.74766 * 30.68561 * 5 4 2
30 30 H 1.08999 * 109.05002 * 215.61153 * 6 5 4
31 31 H 1.08998 * 109.05274 * 334.51269 * 6 5 4
32 32 H 1.08994 * 108.98424 * 79.68313 * 7 6 5
33 33 H 1.09003 * 108.98274 * 198.40361 * 7 6 5
34 34 H 1.09005 * 108.84760 * 79.29421 * 8 7 6
35 35 H 1.08999 * 108.85535 * 197.78498 * 8 7 6
36 36 H 1.09006 * 109.59295 * 333.14118 * 9 8 7
37 37 H 1.08998 * 109.43543 * 212.91035 * 9 8 7
38 38 H 1.09000 * 109.47101 * 63.90555 * 12 10 4
39 39 H 1.08995 * 109.46865 * 183.90577 * 12 10 4
40 40 H 0.97005 * 119.99701 * 179.97438 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 7 2.0196 -0.6925 1.1994
5 6 1.5316 -0.0336 2.4270
6 6 1.4048 -1.0837 3.5021
7 6 2.6608 -1.1422 4.3882
8 6 3.9559 -1.0072 3.5626
9 6 3.9070 -1.7924 2.2781
10 6 3.4045 -0.8737 1.1430
11 1 3.8935 0.0967 1.2287
12 6 3.7712 -1.4993 -0.2042
13 6 3.0046 -2.7838 -0.3867
14 1 2.2671 -3.0811 0.3441
15 6 3.2448 -3.5795 -1.4869
16 7 4.1432 -3.2177 -2.3766
17 14 2.2952 -5.1722 -1.7128
18 1 1.3506 -5.3502 -0.5809
19 1 1.5352 -5.1188 -2.9875
20 1 3.2445 -6.3136 -1.7500
21 1 -0.3633 0.6179 0.8211
22 1 -0.3633 0.4021 -0.9457
23 1 -0.3634 -1.0201 0.1244
24 1 1.8934 -0.5139 -0.8900
25 1 3.1266 1.4437 -0.0854
26 1 1.6086 1.9804 -0.8442
27 1 1.7481 1.9310 0.9296
28 1 2.2415 0.7315 2.7415
29 1 0.5587 0.4206 2.2393
30 1 0.5406 -0.8529 4.1248
31 1 1.2545 -2.0563 3.0334
32 1 2.6188 -0.3326 5.1167
33 1 2.6763 -2.0942 4.9189
34 1 4.1151 0.0450 3.3266
35 1 4.7940 -1.3643 4.1611
36 1 3.2271 -2.6369 2.3916
37 1 4.9057 -2.1565 2.0373
38 1 3.5172 -0.8073 -1.0073
39 1 4.8407 -1.7077 -0.2289
40 1 4.3124 -3.7777 -3.1504
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260543328.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:54:59
Heat of formation + Delta-G solvation = -22.337623 kcal
Electronic energy + Delta-G solvation = -17244.514955 eV
Core-core repulsion = 14865.121690 eV
Total energy + Delta-G solvation = -2379.393266 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 225.179 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-41.01611 -36.48978 -35.38996 -33.53762 -31.84957 -29.57236 -28.05746 -26.75133
-26.00021 -23.58659 -22.31450 -20.40771 -19.66493 -18.29609 -17.14221 -16.50676
-16.18758 -15.54944 -15.42128 -15.07037 -14.83537 -14.17708 -13.80413 -13.71466
-13.20465 -13.12604 -13.07963 -12.68613 -12.67974 -12.60882 -12.47588 -12.23118
-11.99793 -11.56326 -11.33589 -11.30399 -11.25334 -11.14002 -10.89905 -10.63072
-10.36299 -8.66603 -8.05954 -6.08990 1.40986 1.42812 1.55451 2.49387
3.22348 3.32185 3.99460 4.04470 4.16333 4.22476 4.35380 4.42791
4.44017 4.54186 4.60015 4.75329 4.80404 4.85811 4.89568 4.90336
5.01323 5.07240 5.13587 5.15950 5.29690 5.34420 5.38233 5.44926
5.48011 5.52700 5.62787 5.66801 5.70923 5.78453 5.93764 6.42998
6.68209 6.97331 7.07517 7.56880 9.06609
Molecular weight = 225.18amu
Principal moments of inertia in cm(-1)
A = 0.023794 B = 0.010521 C = 0.009191
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1176.484167 B = 2660.650179 C = 3045.842021
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.130 4.130
2 C 0.071 3.929
3 C -0.170 4.170
4 N -0.534 5.534
5 C 0.061 3.939
6 C -0.115 4.115
7 C -0.109 4.109
8 C -0.115 4.115
9 C -0.095 4.095
10 C 0.127 3.873
11 H -0.003 1.003
12 C 0.027 3.973
13 C -0.476 4.476
14 H 0.065 0.935
15 C -0.008 4.008
16 N -0.943 5.943
17 Si 0.951 3.049
18 H -0.264 1.264
19 H -0.285 1.285
20 H -0.287 1.287
21 H 0.069 0.931
22 H 0.060 0.940
23 H 0.048 0.952
24 H 0.064 0.936
25 H 0.032 0.968
26 H 0.065 0.935
27 H 0.066 0.934
28 H 0.034 0.966
29 H 0.085 0.915
30 H 0.077 0.923
31 H 0.052 0.948
32 H 0.072 0.928
33 H 0.060 0.940
34 H 0.050 0.950
35 H 0.063 0.937
36 H 0.059 0.941
37 H 0.041 0.959
38 H -0.006 1.006
39 H -0.016 1.016
40 H 0.256 0.744
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.336 7.354 11.276 14.879
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.188 4.188
2 C -0.036 4.036
3 C -0.229 4.229
4 N -0.258 5.258
5 C -0.065 4.065
6 C -0.153 4.153
7 C -0.147 4.147
8 C -0.153 4.153
9 C -0.133 4.133
10 C 0.016 3.984
11 H 0.014 0.986
12 C -0.011 4.011
13 C -0.514 4.514
14 H 0.083 0.917
15 C -0.203 4.203
16 N -0.586 5.586
17 Si 0.778 3.222
18 H -0.188 1.188
19 H -0.212 1.212
20 H -0.213 1.213
21 H 0.088 0.912
22 H 0.079 0.921
23 H 0.067 0.933
24 H 0.082 0.918
25 H 0.052 0.948
26 H 0.084 0.916
27 H 0.085 0.915
28 H 0.052 0.948
29 H 0.103 0.897
30 H 0.096 0.904
31 H 0.071 0.929
32 H 0.091 0.909
33 H 0.079 0.921
34 H 0.069 0.931
35 H 0.082 0.918
36 H 0.078 0.922
37 H 0.060 0.940
38 H 0.012 0.988
39 H 0.002 0.998
40 H 0.064 0.936
Dipole moment (debyes) X Y Z Total
from point charges -6.440 6.852 11.159 14.593
hybrid contribution 0.544 -0.257 -0.888 1.072
sum -5.896 6.595 10.271 13.556
Atomic orbital electron populations
1.21781 0.93594 1.01682 1.01725 1.21718 0.96067 0.91922 0.93933
1.22342 1.00239 0.97945 1.02411 1.58815 1.12735 1.52167 1.02058
1.21911 0.99960 0.95218 0.89397 1.21392 0.97827 0.99637 0.96446
1.21866 0.93380 1.01978 0.97436 1.21395 0.98469 0.99558 0.95859
1.21250 0.99602 0.98501 0.93974 1.20239 0.87579 0.94403 0.96149
0.98570 1.19319 0.94335 0.95424 0.91974 1.21412 1.19463 1.04646
1.05897 0.91661 1.25842 0.96624 1.01391 0.96440 1.70120 1.35830
1.39718 1.12950 0.85592 0.78667 0.80043 0.77903 1.18770 1.21170
1.21286 0.91225 0.92076 0.93289 0.91761 0.94840 0.91618 0.91539
0.94766 0.89660 0.90417 0.92883 0.90926 0.92106 0.93094 0.91825
0.92223 0.93987 0.98800 0.99795 0.93562
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.91 8.87 71.98 0.64 -3.27 16
2 C 0.07 2.62 2.31 44.92 0.10 2.72 16
3 C -0.17 -5.35 8.67 71.98 0.62 -4.73 16
4 N -0.53 -19.87 3.02 -861.68 -2.60 -22.47 16
5 C 0.06 1.77 3.84 85.45 0.33 2.10 16
6 C -0.12 -3.07 5.41 30.16 0.16 -2.90 16
7 C -0.11 -2.69 5.91 31.27 0.18 -2.50 16
8 C -0.12 -3.38 5.31 30.22 0.16 -3.22 16
9 C -0.10 -3.65 4.51 30.31 0.14 -3.52 16
10 C 0.13 5.29 1.37 46.69 0.06 5.35 16
11 H 0.00 -0.13 6.30 -2.39 -0.02 -0.15 16
12 C 0.03 1.40 4.09 29.85 0.12 1.52 16
13 C -0.48 -26.59 7.51 25.60 0.19 -26.40 16
14 H 0.07 3.63 7.14 -2.91 -0.02 3.61 16
15 C -0.01 -0.44 5.46 84.66 0.46 0.02 16
16 N -0.94 -58.33 13.29 21.45 0.28 -58.04 16
17 Si 0.95 45.77 29.54 68.60 2.03 47.79 16
18 H -0.26 -12.18 7.11 99.48 0.71 -11.47 16
19 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16
20 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16
21 H 0.07 1.71 6.26 -2.39 -0.01 1.70 16
22 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16
23 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16
24 H 0.06 2.99 5.17 -2.39 -0.01 2.98 16
25 H 0.03 1.16 7.01 -2.39 -0.02 1.15 16
26 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16
27 H 0.07 1.79 6.90 -2.39 -0.02 1.78 16
28 H 0.03 0.97 6.45 -2.38 -0.02 0.95 16
29 H 0.09 2.16 5.53 -2.39 -0.01 2.15 16
30 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16
31 H 0.05 1.71 7.26 -2.39 -0.02 1.69 16
32 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16
33 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16
34 H 0.05 1.49 6.58 -2.38 -0.02 1.47 16
35 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16
36 H 0.06 2.46 6.72 -2.38 -0.02 2.44 16
37 H 0.04 1.72 7.93 -2.39 -0.02 1.70 16
38 H -0.01 -0.35 6.18 -2.39 -0.01 -0.36 16
39 H -0.02 -0.96 8.02 -2.39 -0.02 -0.98 16
40 H 0.26 15.04 8.31 -92.70 -0.77 14.27 16
Total: -1.00 -63.00 289.18 3.88 -59.12
By element:
Atomic # 1 Polarization: 7.44 SS G_CDS: 0.99 Total: 8.43 kcal
Atomic # 6 Polarization: -38.01 SS G_CDS: 3.18 Total: -34.83 kcal
Atomic # 7 Polarization: -78.20 SS G_CDS: -2.31 Total: -80.51 kcal
Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.79 kcal
Total: -63.00 3.88 -59.12 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260543328.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 36.782 kcal
(2) G-P(sol) polarization free energy of solvation -62.999 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.217 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.879 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.120 kcal
(6) G-S(sol) free energy of system = (1) + (5) -22.338 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds