Wall clock time and date at job start Mon Mar 30 2020 02:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47007 * 2 1 4 4 H 1.08996 * 109.47515 * 306.37903 * 3 2 1 5 5 C 1.50698 * 109.47371 * 186.37821 * 3 2 1 6 6 H 1.08003 * 120.00489 * 240.00255 * 5 3 2 7 7 C 1.37876 * 120.00029 * 59.99543 * 5 3 2 8 8 N 1.31520 * 119.99914 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00153 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47359 * 60.00484 * 9 7 5 11 11 H 1.48505 * 109.47027 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47186 * 300.00059 * 9 7 5 13 13 C 1.53003 * 109.47061 * 66.38092 * 3 2 1 14 14 H 1.08998 * 109.01101 * 171.95107 * 13 3 2 15 15 C 1.54429 * 109.02430 * 53.03826 * 13 3 2 16 16 C 1.50761 * 109.11125 * 162.06800 * 15 13 3 17 17 C 1.54266 * 112.56200 * 92.90988 * 16 15 13 18 18 C 1.53809 * 112.03156 * 318.61315 * 17 16 15 19 19 C 1.50823 * 111.61553 * 318.99640 * 18 17 16 20 20 N 1.39780 * 108.95980 * 290.82324 * 13 3 2 21 21 C 1.46899 * 111.00160 * 309.68098 * 20 13 3 22 22 H 1.09001 * 109.47378 * 294.12026 * 1 2 3 23 23 H 1.08999 * 109.46856 * 54.12519 * 1 2 3 24 24 H 1.08997 * 109.46934 * 174.12624 * 1 2 3 25 25 H 1.08995 * 109.47344 * 240.00252 * 2 1 3 26 26 H 1.09007 * 109.47016 * 119.99772 * 2 1 3 27 27 H 0.96991 * 120.00129 * 179.97438 * 8 7 5 28 28 H 1.09003 * 109.54392 * 281.97659 * 15 13 3 29 29 H 1.08993 * 109.54508 * 42.15443 * 15 13 3 30 30 H 1.09002 * 108.84865 * 213.85436 * 16 15 13 31 31 H 1.08993 * 108.85336 * 332.24390 * 16 15 13 32 32 H 1.08999 * 108.99078 * 197.92554 * 17 16 15 33 33 H 1.09001 * 108.84415 * 79.20075 * 17 16 15 34 34 H 1.08999 * 109.05504 * 198.44891 * 18 17 16 35 35 H 1.09005 * 108.99421 * 79.50761 * 18 17 16 36 36 H 1.08994 * 109.74778 * 335.43281 * 19 18 17 37 37 H 1.08996 * 109.74909 * 214.70232 * 19 18 17 38 38 H 1.09001 * 109.46792 * 66.77724 * 21 20 13 39 39 H 1.09001 * 109.47322 * 186.77103 * 21 20 13 40 40 H 1.08994 * 109.47529 * 306.77763 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5865 1.9883 -0.8273 5 6 3.5387 1.4455 -0.1578 6 1 4.1615 1.8839 0.6079 7 6 4.1148 0.8885 -1.2798 8 7 3.3564 0.3550 -2.2125 9 14 5.9725 0.8916 -1.4751 10 1 6.5901 0.1477 -0.3480 11 1 6.3364 0.2385 -2.7582 12 1 6.4680 2.2916 -1.4749 13 6 1.6651 2.1160 1.3217 14 1 2.1518 3.0898 1.3746 15 6 2.1630 1.2401 2.4920 16 6 2.2023 2.0716 3.7490 17 6 0.9003 1.9657 4.5696 18 6 -0.3498 1.9891 3.6738 19 6 -0.2176 2.9993 2.5617 20 7 0.2796 2.2964 1.3625 21 6 -0.2035 2.9432 0.1352 22 1 -0.3634 0.4200 0.9379 23 1 -0.3633 0.6022 -0.8327 24 1 -0.3633 -1.0222 -0.1052 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8901 27 1 3.7617 -0.0365 -3.0019 28 1 1.4842 0.3988 2.6324 29 1 3.1631 0.8683 2.2694 30 1 3.0379 1.7393 4.3650 31 1 2.3611 3.1148 3.4763 32 1 0.8520 2.8015 5.2676 33 1 0.9146 1.0332 5.1339 34 1 -1.2187 2.2411 4.2819 35 1 -0.4942 0.9995 3.2402 36 1 0.4889 3.7767 2.8524 37 1 -1.1900 3.4445 2.3511 38 1 -0.0659 2.2682 -0.7095 39 1 -1.2620 3.1806 0.2419 40 1 0.3590 3.8607 -0.0376 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260679790.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:33 Heat of formation + Delta-G solvation = -12.516922 kcal Electronic energy + Delta-G solvation = -17362.541496 eV Core-core repulsion = 14983.574088 eV Total energy + Delta-G solvation = -2378.967408 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.98554 -36.64925 -35.19742 -33.62339 -32.02736 -29.47834 -28.28328 -26.21290 -24.92331 -24.09875 -22.36013 -20.29486 -19.92651 -18.35429 -17.00215 -16.49177 -16.09069 -16.00334 -15.45799 -14.83317 -14.45340 -14.21694 -13.80534 -13.66350 -13.26590 -13.03743 -12.86926 -12.78712 -12.67620 -12.55922 -12.50115 -12.15488 -11.71509 -11.57524 -11.30172 -11.25582 -11.16631 -10.89873 -10.74571 -10.57637 -10.12871 -8.74102 -8.02724 -6.14677 1.40237 1.40766 1.48170 2.44395 3.23069 3.26527 4.00417 4.05293 4.19256 4.33084 4.42818 4.52081 4.63468 4.71837 4.72856 4.80460 4.89436 4.90694 4.97063 5.03733 5.10618 5.19922 5.23002 5.27401 5.36505 5.38442 5.49473 5.52710 5.59391 5.67430 5.71474 5.72748 5.94751 6.10172 6.18894 6.48114 6.56467 6.76115 7.00261 7.51332 9.00484 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.031774 B = 0.009620 C = 0.008408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.003525 B = 2909.989168 C = 3329.480815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.100 4.100 3 C 0.050 3.950 4 H 0.004 0.996 5 C -0.525 4.525 6 H 0.046 0.954 7 C 0.014 3.986 8 N -0.914 5.914 9 Si 0.944 3.056 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.275 1.275 13 C 0.127 3.873 14 H -0.014 1.014 15 C -0.094 4.094 16 C -0.119 4.119 17 C -0.110 4.110 18 C -0.112 4.112 19 C 0.060 3.940 20 N -0.543 5.543 21 C 0.027 3.973 22 H 0.093 0.907 23 H 0.032 0.968 24 H 0.023 0.977 25 H 0.045 0.955 26 H 0.026 0.974 27 H 0.257 0.743 28 H 0.066 0.934 29 H 0.047 0.953 30 H 0.059 0.941 31 H 0.042 0.958 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.082 0.918 35 H 0.063 0.937 36 H 0.029 0.971 37 H 0.085 0.915 38 H 0.063 0.937 39 H 0.083 0.917 40 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.347 3.457 10.714 13.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.138 4.138 3 C 0.031 3.969 4 H 0.022 0.978 5 C -0.563 4.563 6 H 0.064 0.936 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.771 3.229 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.201 1.201 13 C 0.017 3.983 14 H 0.003 0.997 15 C -0.132 4.132 16 C -0.156 4.156 17 C -0.147 4.147 18 C -0.150 4.150 19 C -0.067 4.067 20 N -0.267 5.267 21 C -0.120 4.120 22 H 0.111 0.889 23 H 0.051 0.949 24 H 0.042 0.958 25 H 0.064 0.936 26 H 0.045 0.955 27 H 0.067 0.933 28 H 0.084 0.916 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.100 0.900 35 H 0.081 0.919 36 H 0.047 0.953 37 H 0.103 0.897 38 H 0.082 0.918 39 H 0.101 0.899 40 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges -7.499 2.944 10.580 13.298 hybrid contribution 1.785 0.694 -0.798 2.075 sum -5.714 3.638 9.782 11.898 Atomic orbital electron populations 1.22065 0.96318 0.98359 1.02982 1.21302 0.94580 0.98647 0.99306 1.18889 0.93446 0.93170 0.91347 0.97794 1.21520 0.93526 1.37067 1.04204 0.93618 1.25637 1.01559 0.95405 0.95866 1.70030 1.35949 1.39869 1.09534 0.85827 0.81667 0.78171 0.77264 1.19772 1.21077 1.20070 1.20313 0.86158 0.94937 0.96904 0.99681 1.21313 1.00339 0.98230 0.93359 1.21456 0.98550 0.99181 0.96441 1.21893 0.93264 1.02114 0.97451 1.21381 0.97746 0.99951 0.95958 1.21950 0.99567 0.95055 0.90093 1.59071 1.13131 1.51665 1.02789 1.22545 0.99662 0.96401 0.93383 0.88874 0.94884 0.95822 0.93635 0.95487 0.93333 0.91568 0.93377 0.92263 0.93947 0.91284 0.91661 0.89982 0.91870 0.95289 0.89659 0.91830 0.89854 0.97610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.71 8.44 71.98 0.61 -5.10 16 2 C -0.10 -4.89 4.96 30.59 0.15 -4.74 16 3 C 0.05 2.51 1.53 -11.54 -0.02 2.49 16 4 H 0.00 0.23 5.68 -2.39 -0.01 0.21 16 5 C -0.52 -29.27 7.59 25.60 0.19 -29.07 16 6 H 0.05 2.54 7.36 -2.91 -0.02 2.52 16 7 C 0.01 0.77 5.29 84.65 0.45 1.22 16 8 N -0.91 -53.81 11.29 21.45 0.24 -53.57 16 9 Si 0.94 44.63 29.54 68.60 2.03 46.66 16 10 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 12 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 13 C 0.13 5.28 1.12 46.68 0.05 5.33 16 14 H -0.01 -0.66 7.52 -2.39 -0.02 -0.68 16 15 C -0.09 -3.58 3.69 30.35 0.11 -3.47 16 16 C -0.12 -3.60 5.33 30.30 0.16 -3.44 16 17 C -0.11 -2.60 5.91 31.30 0.18 -2.42 16 18 C -0.11 -2.69 5.41 30.16 0.16 -2.52 16 19 C 0.06 1.63 5.37 85.46 0.46 2.09 16 20 N -0.54 -18.80 1.37 -913.04 -1.25 -20.04 16 21 C 0.03 0.94 8.00 127.69 1.02 1.96 16 22 H 0.09 3.49 5.71 -2.39 -0.01 3.47 16 23 H 0.03 1.35 6.13 -2.39 -0.01 1.34 16 24 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.05 2.55 5.93 -2.39 -0.01 2.54 16 26 H 0.03 1.29 6.33 -2.38 -0.02 1.27 16 27 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 28 H 0.07 2.47 6.28 -2.39 -0.01 2.46 16 29 H 0.05 2.08 6.81 -2.39 -0.02 2.06 16 30 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.04 1.35 6.59 -2.39 -0.02 1.34 16 32 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.06 1.71 7.18 -2.38 -0.02 1.70 16 36 H 0.03 0.83 6.67 -2.39 -0.02 0.82 16 37 H 0.09 1.95 7.51 -2.39 -0.02 1.93 16 38 H 0.06 2.52 3.86 -2.39 -0.01 2.51 16 39 H 0.08 2.27 7.64 -2.39 -0.02 2.25 16 40 H 0.01 0.19 8.10 -2.39 -0.02 0.17 16 Total: -1.00 -60.07 280.43 5.55 -54.52 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: 1.00 Total: 10.11 kcal Atomic # 6 Polarization: -41.22 SS G_CDS: 3.54 Total: -37.68 kcal Atomic # 7 Polarization: -72.60 SS G_CDS: -1.01 Total: -73.61 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -60.07 5.55 -54.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260679790.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.004 kcal (2) G-P(sol) polarization free energy of solvation -60.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds