Wall clock time and date at job start Mon Mar 30 2020 02:38:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.52999 * 109.47007 * 2 1
4 4 H 1.08996 * 109.47515 * 306.37903 * 3 2 1
5 5 C 1.50698 * 109.47371 * 186.37821 * 3 2 1
6 6 H 1.08003 * 120.00489 * 240.00255 * 5 3 2
7 7 C 1.37876 * 120.00029 * 59.99543 * 5 3 2
8 8 N 1.31520 * 119.99914 * 0.02562 * 7 5 3
9 9 Si 1.86796 * 120.00153 * 180.02562 * 7 5 3
10 10 H 1.48493 * 109.47359 * 60.00484 * 9 7 5
11 11 H 1.48505 * 109.47027 * 180.02562 * 9 7 5
12 12 H 1.48505 * 109.47186 * 300.00059 * 9 7 5
13 13 C 1.53003 * 109.47061 * 66.38092 * 3 2 1
14 14 H 1.08998 * 109.01101 * 171.95107 * 13 3 2
15 15 C 1.54429 * 109.02430 * 53.03826 * 13 3 2
16 16 C 1.50761 * 109.11125 * 162.06800 * 15 13 3
17 17 C 1.54266 * 112.56200 * 92.90988 * 16 15 13
18 18 C 1.53809 * 112.03156 * 318.61315 * 17 16 15
19 19 C 1.50823 * 111.61553 * 318.99640 * 18 17 16
20 20 N 1.39780 * 108.95980 * 290.82324 * 13 3 2
21 21 C 1.46899 * 111.00160 * 309.68098 * 20 13 3
22 22 H 1.09001 * 109.47378 * 294.12026 * 1 2 3
23 23 H 1.08999 * 109.46856 * 54.12519 * 1 2 3
24 24 H 1.08997 * 109.46934 * 174.12624 * 1 2 3
25 25 H 1.08995 * 109.47344 * 240.00252 * 2 1 3
26 26 H 1.09007 * 109.47016 * 119.99772 * 2 1 3
27 27 H 0.96991 * 120.00129 * 179.97438 * 8 7 5
28 28 H 1.09003 * 109.54392 * 281.97659 * 15 13 3
29 29 H 1.08993 * 109.54508 * 42.15443 * 15 13 3
30 30 H 1.09002 * 108.84865 * 213.85436 * 16 15 13
31 31 H 1.08993 * 108.85336 * 332.24390 * 16 15 13
32 32 H 1.08999 * 108.99078 * 197.92554 * 17 16 15
33 33 H 1.09001 * 108.84415 * 79.20075 * 17 16 15
34 34 H 1.08999 * 109.05504 * 198.44891 * 18 17 16
35 35 H 1.09005 * 108.99421 * 79.50761 * 18 17 16
36 36 H 1.08994 * 109.74778 * 335.43281 * 19 18 17
37 37 H 1.08996 * 109.74909 * 214.70232 * 19 18 17
38 38 H 1.09001 * 109.46792 * 66.77724 * 21 20 13
39 39 H 1.09001 * 109.47322 * 186.77103 * 21 20 13
40 40 H 1.08994 * 109.47529 * 306.77763 * 21 20 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.5865 1.9883 -0.8273
5 6 3.5387 1.4455 -0.1578
6 1 4.1615 1.8839 0.6079
7 6 4.1148 0.8885 -1.2798
8 7 3.3564 0.3550 -2.2125
9 14 5.9725 0.8916 -1.4751
10 1 6.5901 0.1477 -0.3480
11 1 6.3364 0.2385 -2.7582
12 1 6.4680 2.2916 -1.4749
13 6 1.6651 2.1160 1.3217
14 1 2.1518 3.0898 1.3746
15 6 2.1630 1.2401 2.4920
16 6 2.2023 2.0716 3.7490
17 6 0.9003 1.9657 4.5696
18 6 -0.3498 1.9891 3.6738
19 6 -0.2176 2.9993 2.5617
20 7 0.2796 2.2964 1.3625
21 6 -0.2035 2.9432 0.1352
22 1 -0.3634 0.4200 0.9379
23 1 -0.3633 0.6022 -0.8327
24 1 -0.3633 -1.0222 -0.1052
25 1 1.8934 -0.5138 -0.8900
26 1 1.8933 -0.5138 0.8901
27 1 3.7617 -0.0365 -3.0019
28 1 1.4842 0.3988 2.6324
29 1 3.1631 0.8683 2.2694
30 1 3.0379 1.7393 4.3650
31 1 2.3611 3.1148 3.4763
32 1 0.8520 2.8015 5.2676
33 1 0.9146 1.0332 5.1339
34 1 -1.2187 2.2411 4.2819
35 1 -0.4942 0.9995 3.2402
36 1 0.4889 3.7767 2.8524
37 1 -1.1900 3.4445 2.3511
38 1 -0.0659 2.2682 -0.7095
39 1 -1.2620 3.1806 0.2419
40 1 0.3590 3.8607 -0.0376
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260679790.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:38:33
Heat of formation + Delta-G solvation = -12.516922 kcal
Electronic energy + Delta-G solvation = -17362.541496 eV
Core-core repulsion = 14983.574088 eV
Total energy + Delta-G solvation = -2378.967408 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 225.179 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-40.98554 -36.64925 -35.19742 -33.62339 -32.02736 -29.47834 -28.28328 -26.21290
-24.92331 -24.09875 -22.36013 -20.29486 -19.92651 -18.35429 -17.00215 -16.49177
-16.09069 -16.00334 -15.45799 -14.83317 -14.45340 -14.21694 -13.80534 -13.66350
-13.26590 -13.03743 -12.86926 -12.78712 -12.67620 -12.55922 -12.50115 -12.15488
-11.71509 -11.57524 -11.30172 -11.25582 -11.16631 -10.89873 -10.74571 -10.57637
-10.12871 -8.74102 -8.02724 -6.14677 1.40237 1.40766 1.48170 2.44395
3.23069 3.26527 4.00417 4.05293 4.19256 4.33084 4.42818 4.52081
4.63468 4.71837 4.72856 4.80460 4.89436 4.90694 4.97063 5.03733
5.10618 5.19922 5.23002 5.27401 5.36505 5.38442 5.49473 5.52710
5.59391 5.67430 5.71474 5.72748 5.94751 6.10172 6.18894 6.48114
6.56467 6.76115 7.00261 7.51332 9.00484
Molecular weight = 225.18amu
Principal moments of inertia in cm(-1)
A = 0.031774 B = 0.009620 C = 0.008408
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 881.003525 B = 2909.989168 C = 3329.480815
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C -0.100 4.100
3 C 0.050 3.950
4 H 0.004 0.996
5 C -0.525 4.525
6 H 0.046 0.954
7 C 0.014 3.986
8 N -0.914 5.914
9 Si 0.944 3.056
10 H -0.272 1.272
11 H -0.285 1.285
12 H -0.275 1.275
13 C 0.127 3.873
14 H -0.014 1.014
15 C -0.094 4.094
16 C -0.119 4.119
17 C -0.110 4.110
18 C -0.112 4.112
19 C 0.060 3.940
20 N -0.543 5.543
21 C 0.027 3.973
22 H 0.093 0.907
23 H 0.032 0.968
24 H 0.023 0.977
25 H 0.045 0.955
26 H 0.026 0.974
27 H 0.257 0.743
28 H 0.066 0.934
29 H 0.047 0.953
30 H 0.059 0.941
31 H 0.042 0.958
32 H 0.068 0.932
33 H 0.065 0.935
34 H 0.082 0.918
35 H 0.063 0.937
36 H 0.029 0.971
37 H 0.085 0.915
38 H 0.063 0.937
39 H 0.083 0.917
40 H 0.005 0.995
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.347 3.457 10.714 13.443
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.138 4.138
3 C 0.031 3.969
4 H 0.022 0.978
5 C -0.563 4.563
6 H 0.064 0.936
7 C -0.185 4.185
8 N -0.554 5.554
9 Si 0.771 3.229
10 H -0.198 1.198
11 H -0.211 1.211
12 H -0.201 1.201
13 C 0.017 3.983
14 H 0.003 0.997
15 C -0.132 4.132
16 C -0.156 4.156
17 C -0.147 4.147
18 C -0.150 4.150
19 C -0.067 4.067
20 N -0.267 5.267
21 C -0.120 4.120
22 H 0.111 0.889
23 H 0.051 0.949
24 H 0.042 0.958
25 H 0.064 0.936
26 H 0.045 0.955
27 H 0.067 0.933
28 H 0.084 0.916
29 H 0.066 0.934
30 H 0.077 0.923
31 H 0.061 0.939
32 H 0.087 0.913
33 H 0.083 0.917
34 H 0.100 0.900
35 H 0.081 0.919
36 H 0.047 0.953
37 H 0.103 0.897
38 H 0.082 0.918
39 H 0.101 0.899
40 H 0.024 0.976
Dipole moment (debyes) X Y Z Total
from point charges -7.499 2.944 10.580 13.298
hybrid contribution 1.785 0.694 -0.798 2.075
sum -5.714 3.638 9.782 11.898
Atomic orbital electron populations
1.22065 0.96318 0.98359 1.02982 1.21302 0.94580 0.98647 0.99306
1.18889 0.93446 0.93170 0.91347 0.97794 1.21520 0.93526 1.37067
1.04204 0.93618 1.25637 1.01559 0.95405 0.95866 1.70030 1.35949
1.39869 1.09534 0.85827 0.81667 0.78171 0.77264 1.19772 1.21077
1.20070 1.20313 0.86158 0.94937 0.96904 0.99681 1.21313 1.00339
0.98230 0.93359 1.21456 0.98550 0.99181 0.96441 1.21893 0.93264
1.02114 0.97451 1.21381 0.97746 0.99951 0.95958 1.21950 0.99567
0.95055 0.90093 1.59071 1.13131 1.51665 1.02789 1.22545 0.99662
0.96401 0.93383 0.88874 0.94884 0.95822 0.93635 0.95487 0.93333
0.91568 0.93377 0.92263 0.93947 0.91284 0.91661 0.89982 0.91870
0.95289 0.89659 0.91830 0.89854 0.97610
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -5.71 8.44 71.98 0.61 -5.10 16
2 C -0.10 -4.89 4.96 30.59 0.15 -4.74 16
3 C 0.05 2.51 1.53 -11.54 -0.02 2.49 16
4 H 0.00 0.23 5.68 -2.39 -0.01 0.21 16
5 C -0.52 -29.27 7.59 25.60 0.19 -29.07 16
6 H 0.05 2.54 7.36 -2.91 -0.02 2.52 16
7 C 0.01 0.77 5.29 84.65 0.45 1.22 16
8 N -0.91 -53.81 11.29 21.45 0.24 -53.57 16
9 Si 0.94 44.63 29.54 68.60 2.03 46.66 16
10 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16
11 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16
12 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16
13 C 0.13 5.28 1.12 46.68 0.05 5.33 16
14 H -0.01 -0.66 7.52 -2.39 -0.02 -0.68 16
15 C -0.09 -3.58 3.69 30.35 0.11 -3.47 16
16 C -0.12 -3.60 5.33 30.30 0.16 -3.44 16
17 C -0.11 -2.60 5.91 31.30 0.18 -2.42 16
18 C -0.11 -2.69 5.41 30.16 0.16 -2.52 16
19 C 0.06 1.63 5.37 85.46 0.46 2.09 16
20 N -0.54 -18.80 1.37 -913.04 -1.25 -20.04 16
21 C 0.03 0.94 8.00 127.69 1.02 1.96 16
22 H 0.09 3.49 5.71 -2.39 -0.01 3.47 16
23 H 0.03 1.35 6.13 -2.39 -0.01 1.34 16
24 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16
25 H 0.05 2.55 5.93 -2.39 -0.01 2.54 16
26 H 0.03 1.29 6.33 -2.38 -0.02 1.27 16
27 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16
28 H 0.07 2.47 6.28 -2.39 -0.01 2.46 16
29 H 0.05 2.08 6.81 -2.39 -0.02 2.06 16
30 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16
31 H 0.04 1.35 6.59 -2.39 -0.02 1.34 16
32 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16
33 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16
34 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16
35 H 0.06 1.71 7.18 -2.38 -0.02 1.70 16
36 H 0.03 0.83 6.67 -2.39 -0.02 0.82 16
37 H 0.09 1.95 7.51 -2.39 -0.02 1.93 16
38 H 0.06 2.52 3.86 -2.39 -0.01 2.51 16
39 H 0.08 2.27 7.64 -2.39 -0.02 2.25 16
40 H 0.01 0.19 8.10 -2.39 -0.02 0.17 16
Total: -1.00 -60.07 280.43 5.55 -54.52
By element:
Atomic # 1 Polarization: 9.11 SS G_CDS: 1.00 Total: 10.11 kcal
Atomic # 6 Polarization: -41.22 SS G_CDS: 3.54 Total: -37.68 kcal
Atomic # 7 Polarization: -72.60 SS G_CDS: -1.01 Total: -73.61 kcal
Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal
Total: -60.07 5.55 -54.52 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260679790.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 42.004 kcal
(2) G-P(sol) polarization free energy of solvation -60.075 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.071 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.554 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.521 kcal
(6) G-S(sol) free energy of system = (1) + (5) -12.517 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds