Wall clock time and date at job start Mon Mar 30 2020 02:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52995 * 109.47469 * 2 1 4 4 H 1.09001 * 109.47260 * 304.35105 * 3 2 1 5 5 C 1.50699 * 109.46974 * 64.34667 * 3 2 1 6 6 H 1.08002 * 120.00648 * 86.25183 * 5 3 2 7 7 C 1.37888 * 119.99977 * 266.25363 * 5 3 2 8 8 N 1.31514 * 119.99630 * 2.96385 * 7 5 3 9 9 Si 1.86799 * 119.99965 * 182.96735 * 7 5 3 10 10 H 1.48500 * 109.47197 * 59.99937 * 9 7 5 11 11 H 1.48495 * 109.47149 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46912 * 299.99562 * 9 7 5 13 13 C 1.52999 * 109.47290 * 184.34302 * 3 2 1 14 14 H 1.08997 * 108.78212 * 301.16047 * 13 3 2 15 15 C 1.50510 * 108.76118 * 59.58828 * 13 3 2 16 16 C 1.54306 * 108.46058 * 214.61427 * 15 13 3 17 17 C 1.45882 * 112.11613 * 281.33668 * 16 15 13 18 18 C 1.54303 * 112.18171 * 61.16717 * 17 16 15 19 19 C 1.50448 * 108.49725 * 281.45748 * 18 17 16 20 20 N 1.48002 * 112.82308 * 93.73636 * 19 18 17 21 21 C 1.46899 * 111.00158 * 191.34486 * 20 19 18 22 22 H 1.09000 * 109.47158 * 182.20284 * 1 2 3 23 23 H 1.08994 * 109.47188 * 302.20673 * 1 2 3 24 24 H 1.09002 * 109.46950 * 62.20623 * 1 2 3 25 25 H 1.09003 * 109.47512 * 239.99666 * 2 1 3 26 26 H 1.09008 * 109.46951 * 120.00266 * 2 1 3 27 27 H 0.96998 * 119.99314 * 179.97438 * 8 7 5 28 28 H 1.08999 * 109.71908 * 94.88511 * 15 13 3 29 29 H 1.09006 * 109.58417 * 334.26577 * 15 13 3 30 30 H 1.09007 * 108.93856 * 160.68287 * 16 15 13 31 31 H 1.08998 * 108.93631 * 41.99183 * 16 15 13 32 32 H 1.09001 * 108.93831 * 181.85971 * 17 16 15 33 33 H 1.08995 * 108.93601 * 300.55862 * 17 16 15 34 34 H 1.08994 * 109.63817 * 41.16777 * 18 17 16 35 35 H 1.09005 * 109.62969 * 161.56551 * 18 17 16 36 36 H 1.09005 * 108.81168 * 214.59231 * 19 18 17 37 37 H 1.09000 * 108.81674 * 332.87355 * 19 18 17 38 38 H 1.09005 * 109.47340 * 68.24425 * 21 20 19 39 39 H 1.08996 * 109.46995 * 188.24528 * 21 20 19 40 40 H 1.08997 * 109.46884 * 308.24174 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6145 1.9783 -0.8484 5 6 1.6275 2.1211 1.2808 6 1 2.2453 2.0324 2.1622 7 6 0.4613 2.8552 1.3274 8 7 -0.3205 2.9153 0.2716 9 14 -0.0080 3.7646 2.8901 10 1 1.0503 4.7507 3.2259 11 1 -1.2963 4.4733 2.6825 12 1 -0.1510 2.7931 4.0042 13 6 3.5661 1.4438 -0.1092 14 1 3.9787 0.8880 0.7327 15 6 3.9605 0.7540 -1.3875 16 6 5.2796 -0.0087 -1.1443 17 6 6.4390 0.8763 -1.1722 18 6 6.3722 1.9587 -0.0744 19 6 5.4313 3.0413 -0.5282 20 7 4.0482 2.8414 -0.0408 21 6 3.1152 3.7538 -0.7153 22 1 -0.3633 -1.0269 0.0395 23 1 -0.3633 0.5477 0.8695 24 1 -0.3633 0.4792 -0.9091 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 -1.1411 3.4314 0.3045 28 1 4.1050 1.4936 -2.1750 29 1 3.1798 0.0516 -1.6796 30 1 5.3963 -0.7690 -1.9166 31 1 5.2312 -0.4978 -0.1714 32 1 7.3413 0.2820 -1.0285 33 1 6.4883 1.3641 -2.1456 34 1 6.0042 1.5183 0.8522 35 1 7.3655 2.3772 0.0881 36 1 5.7973 4.0010 -0.1631 37 1 5.4201 3.0634 -1.6179 38 1 3.0271 3.4728 -1.7648 39 1 2.1369 3.6906 -0.2389 40 1 3.4893 4.7750 -0.6427 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260679794.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:36 Heat of formation + Delta-G solvation = -7.767512 kcal Electronic energy + Delta-G solvation = -17285.160062 eV Core-core repulsion = 14906.398603 eV Total energy + Delta-G solvation = -2378.761458 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.11847 -35.29240 -33.49097 -31.86889 -30.56431 -27.45009 -26.88428 -24.05145 -23.62301 -22.31796 -20.14611 -19.78697 -17.98912 -16.21849 -15.47193 -15.19005 -14.30477 -13.98012 -13.75088 -13.35882 -12.99963 -12.64120 -12.55239 -11.88786 -11.77292 -11.46461 -11.31882 -11.12029 -10.78645 -10.67348 -10.39932 -10.39108 -10.28784 -10.08799 -10.02271 -9.97508 -9.57320 -9.29439 -8.69718 -8.64006 -8.22311 -7.09724 -5.88925 -3.86085 3.40267 3.44433 3.49510 4.54519 4.76642 5.08337 5.14526 5.36068 5.42659 5.67027 5.76008 5.94253 5.99469 6.00810 6.23121 6.30340 6.39349 6.40412 6.45556 6.48977 6.53179 6.55982 6.62474 6.68789 6.72923 6.78243 6.98160 7.12472 7.26090 7.43012 7.44095 7.58754 7.88723 7.95590 8.05979 8.19860 8.29304 8.61703 9.17820 9.71730 11.18443 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.030349 B = 0.010235 C = 0.008605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.393318 B = 2735.107838 C = 3253.093593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.106 4.106 3 C 0.030 3.970 4 H 0.059 0.941 5 C -0.476 4.476 6 H 0.053 0.947 7 C 0.060 3.940 8 N -0.894 5.894 9 Si 0.881 3.119 10 H -0.278 1.278 11 H -0.291 1.291 12 H -0.281 1.281 13 C 0.100 3.900 14 H 0.060 0.940 15 C -0.151 4.151 16 C -0.117 4.117 17 C -0.115 4.115 18 C -0.119 4.119 19 C 0.060 3.940 20 N -0.528 5.528 21 C 0.022 3.978 22 H 0.007 0.993 23 H 0.072 0.928 24 H 0.046 0.954 25 H 0.024 0.976 26 H 0.035 0.965 27 H 0.257 0.743 28 H 0.051 0.949 29 H 0.074 0.926 30 H 0.048 0.952 31 H 0.059 0.941 32 H 0.051 0.949 33 H 0.052 0.948 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.019 0.981 38 H 0.002 0.998 39 H 0.124 0.876 40 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.757 -2.730 -3.126 9.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.145 4.145 3 C 0.012 3.988 4 H 0.077 0.923 5 C -0.515 4.515 6 H 0.071 0.929 7 C -0.140 4.140 8 N -0.534 5.534 9 Si 0.710 3.290 10 H -0.203 1.203 11 H -0.217 1.217 12 H -0.206 1.206 13 C -0.007 4.007 14 H 0.078 0.922 15 C -0.190 4.190 16 C -0.155 4.155 17 C -0.152 4.152 18 C -0.157 4.157 19 C -0.067 4.067 20 N -0.252 5.252 21 C -0.125 4.125 22 H 0.026 0.974 23 H 0.091 0.909 24 H 0.065 0.935 25 H 0.043 0.957 26 H 0.054 0.946 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.093 0.907 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.037 0.963 38 H 0.020 0.980 39 H 0.142 0.858 40 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 8.602 -2.519 -2.713 9.365 hybrid contribution -0.218 0.371 -0.067 0.436 sum 8.384 -2.148 -2.781 9.091 Atomic orbital electron populations 1.21509 0.96034 0.96627 1.03621 1.21700 0.96283 0.99111 0.97357 1.19252 0.87966 0.92440 0.99172 0.92271 1.20905 1.05194 1.29014 0.96348 0.92883 1.24862 0.96641 0.96730 0.95743 1.69972 1.13048 1.41894 1.28507 0.86825 0.77422 0.80280 0.84472 1.20348 1.21741 1.20637 1.21531 0.98785 0.86564 0.93851 0.92177 1.22214 0.96619 0.99897 1.00240 1.20555 0.95474 0.98080 1.01372 1.20573 0.98076 0.97702 0.98890 1.21396 0.98514 0.96385 0.99378 1.21755 0.90395 0.97970 0.96618 1.61765 0.99654 1.06383 1.57375 1.22606 1.00830 0.93657 0.95430 0.97380 0.90948 0.93502 0.95733 0.94596 0.93268 0.93066 0.90716 0.93324 0.92220 0.93009 0.92887 0.90631 0.92165 0.92453 0.96296 0.97991 0.85754 0.94541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.74 8.76 37.15 0.33 -2.41 16 2 C -0.11 -2.33 5.20 -26.74 -0.14 -2.47 16 3 C 0.03 0.71 0.89 -91.77 -0.08 0.63 16 4 H 0.06 1.54 5.84 -51.93 -0.30 1.23 16 5 C -0.48 -12.31 6.06 -34.44 -0.21 -12.52 16 6 H 0.05 1.44 7.81 -52.49 -0.41 1.03 16 7 C 0.06 1.57 3.50 -17.82 -0.06 1.51 16 8 N -0.89 -24.08 11.12 55.43 0.62 -23.47 16 9 Si 0.88 21.13 29.54 -169.99 -5.02 16.11 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 C 0.10 2.06 1.36 -68.35 -0.09 1.97 16 14 H 0.06 1.29 6.58 -51.93 -0.34 0.94 16 15 C -0.15 -2.69 4.95 -27.29 -0.14 -2.83 16 16 C -0.12 -1.76 5.30 -29.42 -0.16 -1.92 16 17 C -0.11 -1.58 5.30 -29.42 -0.16 -1.73 16 18 C -0.12 -1.76 5.63 -27.32 -0.15 -1.91 16 19 C 0.06 1.03 4.97 -4.49 -0.02 1.01 16 20 N -0.53 -10.83 4.52 -236.13 -1.07 -11.90 16 21 C 0.02 0.48 8.18 60.06 0.49 0.97 16 22 H 0.01 0.15 8.14 -51.93 -0.42 -0.28 16 23 H 0.07 1.82 5.98 -51.93 -0.31 1.51 16 24 H 0.05 1.10 8.09 -51.93 -0.42 0.68 16 25 H 0.02 0.49 5.80 -51.93 -0.30 0.19 16 26 H 0.04 0.78 8.14 -51.92 -0.42 0.36 16 27 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 28 H 0.05 0.94 6.62 -51.93 -0.34 0.59 16 29 H 0.07 1.36 5.34 -51.93 -0.28 1.09 16 30 H 0.05 0.66 8.14 -51.92 -0.42 0.24 16 31 H 0.06 0.91 7.51 -51.93 -0.39 0.52 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.72 7.51 -51.93 -0.39 0.33 16 34 H 0.08 1.23 7.08 -51.93 -0.37 0.86 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.02 0.32 6.48 -51.93 -0.34 -0.02 16 38 H 0.00 0.03 7.70 -51.93 -0.40 -0.37 16 39 H 0.12 3.09 4.17 -51.93 -0.22 2.87 16 40 H 0.04 0.72 8.10 -51.93 -0.42 0.30 16 LS Contribution 284.38 15.07 4.29 4.29 Total: -1.00 -25.87 284.38 -8.48 -34.35 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -6.90 Total: 0.33 kcal Atomic # 6 Polarization: -19.32 SS G_CDS: -0.39 Total: -19.71 kcal Atomic # 7 Polarization: -34.92 SS G_CDS: -0.45 Total: -35.37 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -25.87 -8.48 -34.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260679794.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.581 kcal (2) G-P(sol) polarization free energy of solvation -25.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds