Wall clock time and date at job start Mon Mar 30 2020 02:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52995 * 109.47469 * 2 1 4 4 H 1.09001 * 109.47260 * 304.35105 * 3 2 1 5 5 C 1.50699 * 109.46974 * 64.34667 * 3 2 1 6 6 H 1.08002 * 120.00648 * 86.25183 * 5 3 2 7 7 C 1.37888 * 119.99977 * 266.25363 * 5 3 2 8 8 N 1.31514 * 119.99630 * 2.96385 * 7 5 3 9 9 Si 1.86799 * 119.99965 * 182.96735 * 7 5 3 10 10 H 1.48500 * 109.47197 * 59.99937 * 9 7 5 11 11 H 1.48495 * 109.47149 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46912 * 299.99562 * 9 7 5 13 13 C 1.52999 * 109.47290 * 184.34302 * 3 2 1 14 14 H 1.08997 * 108.78212 * 301.16047 * 13 3 2 15 15 C 1.50510 * 108.76118 * 59.58828 * 13 3 2 16 16 C 1.54306 * 108.46058 * 214.61427 * 15 13 3 17 17 C 1.45882 * 112.11613 * 281.33668 * 16 15 13 18 18 C 1.54303 * 112.18171 * 61.16717 * 17 16 15 19 19 C 1.50448 * 108.49725 * 281.45748 * 18 17 16 20 20 N 1.48002 * 112.82308 * 93.73636 * 19 18 17 21 21 C 1.46899 * 111.00158 * 191.34486 * 20 19 18 22 22 H 1.09000 * 109.47158 * 182.20284 * 1 2 3 23 23 H 1.08994 * 109.47188 * 302.20673 * 1 2 3 24 24 H 1.09002 * 109.46950 * 62.20623 * 1 2 3 25 25 H 1.09003 * 109.47512 * 239.99666 * 2 1 3 26 26 H 1.09008 * 109.46951 * 120.00266 * 2 1 3 27 27 H 0.96998 * 119.99314 * 179.97438 * 8 7 5 28 28 H 1.08999 * 109.71908 * 94.88511 * 15 13 3 29 29 H 1.09006 * 109.58417 * 334.26577 * 15 13 3 30 30 H 1.09007 * 108.93856 * 160.68287 * 16 15 13 31 31 H 1.08998 * 108.93631 * 41.99183 * 16 15 13 32 32 H 1.09001 * 108.93831 * 181.85971 * 17 16 15 33 33 H 1.08995 * 108.93601 * 300.55862 * 17 16 15 34 34 H 1.08994 * 109.63817 * 41.16777 * 18 17 16 35 35 H 1.09005 * 109.62969 * 161.56551 * 18 17 16 36 36 H 1.09005 * 108.81168 * 214.59231 * 19 18 17 37 37 H 1.09000 * 108.81674 * 332.87355 * 19 18 17 38 38 H 1.09005 * 109.47340 * 68.24425 * 21 20 19 39 39 H 1.08996 * 109.46995 * 188.24528 * 21 20 19 40 40 H 1.08997 * 109.46884 * 308.24174 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6145 1.9783 -0.8484 5 6 1.6275 2.1211 1.2808 6 1 2.2453 2.0324 2.1622 7 6 0.4613 2.8552 1.3274 8 7 -0.3205 2.9153 0.2716 9 14 -0.0080 3.7646 2.8901 10 1 1.0503 4.7507 3.2259 11 1 -1.2963 4.4733 2.6825 12 1 -0.1510 2.7931 4.0042 13 6 3.5661 1.4438 -0.1092 14 1 3.9787 0.8880 0.7327 15 6 3.9605 0.7540 -1.3875 16 6 5.2796 -0.0087 -1.1443 17 6 6.4390 0.8763 -1.1722 18 6 6.3722 1.9587 -0.0744 19 6 5.4313 3.0413 -0.5282 20 7 4.0482 2.8414 -0.0408 21 6 3.1152 3.7538 -0.7153 22 1 -0.3633 -1.0269 0.0395 23 1 -0.3633 0.5477 0.8695 24 1 -0.3633 0.4792 -0.9091 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 -1.1411 3.4314 0.3045 28 1 4.1050 1.4936 -2.1750 29 1 3.1798 0.0516 -1.6796 30 1 5.3963 -0.7690 -1.9166 31 1 5.2312 -0.4978 -0.1714 32 1 7.3413 0.2820 -1.0285 33 1 6.4883 1.3641 -2.1456 34 1 6.0042 1.5183 0.8522 35 1 7.3655 2.3772 0.0881 36 1 5.7973 4.0010 -0.1631 37 1 5.4201 3.0634 -1.6179 38 1 3.0271 3.4728 -1.7648 39 1 2.1369 3.6906 -0.2389 40 1 3.4893 4.7750 -0.6427 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260679794.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:35 Heat of formation + Delta-G solvation = -21.739188 kcal Electronic energy + Delta-G solvation = -17285.765919 eV Core-core repulsion = 14906.398603 eV Total energy + Delta-G solvation = -2379.367316 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.60620 -36.91072 -34.99282 -33.70148 -32.17292 -29.09139 -28.55185 -25.77996 -25.20692 -23.93574 -21.57519 -21.30034 -19.61649 -18.21625 -16.93419 -16.66421 -16.17753 -15.50364 -15.29804 -14.86256 -14.40666 -14.29186 -14.13664 -13.62499 -13.35571 -13.18792 -12.90244 -12.70439 -12.58891 -12.42438 -12.17374 -12.07313 -11.80289 -11.50794 -11.47674 -11.45083 -11.23964 -10.95699 -10.60595 -10.43455 -10.23575 -8.68445 -7.92708 -5.92911 1.45167 1.47518 1.53214 2.54880 3.23676 3.41536 3.86179 3.97240 4.15885 4.30412 4.45072 4.50970 4.63503 4.68204 4.73322 4.74310 4.80391 4.92782 4.94226 5.01769 5.10005 5.13923 5.23360 5.30681 5.32720 5.35752 5.47126 5.50435 5.56356 5.61573 5.66436 5.71587 5.94230 6.02525 6.09794 6.52507 6.57579 6.81048 7.13921 7.66011 9.13278 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.030349 B = 0.010235 C = 0.008605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.393318 B = 2735.107838 C = 3253.093593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.104 4.104 3 C 0.033 3.967 4 H 0.031 0.969 5 C -0.477 4.477 6 H 0.036 0.964 7 C 0.028 3.972 8 N -0.911 5.911 9 Si 0.925 3.075 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.280 1.280 13 C 0.110 3.890 14 H 0.051 0.949 15 C -0.145 4.145 16 C -0.112 4.112 17 C -0.113 4.113 18 C -0.116 4.116 19 C 0.060 3.940 20 N -0.546 5.546 21 C 0.032 3.968 22 H 0.034 0.966 23 H 0.043 0.957 24 H 0.030 0.970 25 H 0.047 0.953 26 H 0.037 0.963 27 H 0.254 0.746 28 H 0.045 0.955 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.056 0.944 32 H 0.077 0.923 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.086 0.914 36 H 0.063 0.937 37 H 0.022 0.978 38 H -0.001 1.001 39 H 0.090 0.910 40 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.578 -3.530 -3.435 11.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.142 4.142 3 C 0.014 3.986 4 H 0.049 0.951 5 C -0.516 4.516 6 H 0.054 0.946 7 C -0.170 4.170 8 N -0.552 5.552 9 Si 0.753 3.247 10 H -0.206 1.206 11 H -0.217 1.217 12 H -0.206 1.206 13 C 0.002 3.998 14 H 0.069 0.931 15 C -0.184 4.184 16 C -0.150 4.150 17 C -0.150 4.150 18 C -0.154 4.154 19 C -0.067 4.067 20 N -0.271 5.271 21 C -0.116 4.116 22 H 0.053 0.947 23 H 0.062 0.938 24 H 0.049 0.951 25 H 0.065 0.935 26 H 0.055 0.945 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.105 0.895 36 H 0.082 0.918 37 H 0.041 0.959 38 H 0.017 0.983 39 H 0.108 0.892 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 10.433 -3.324 -3.017 11.358 hybrid contribution -0.774 0.634 0.036 1.002 sum 9.659 -2.690 -2.981 10.460 Atomic orbital electron populations 1.21377 0.96577 0.97581 1.01350 1.21646 0.95738 0.98407 0.98423 1.19161 0.90098 0.92619 0.96734 0.95104 1.20992 1.04758 1.29118 0.96707 0.94554 1.25278 0.96820 0.97454 0.97466 1.70064 1.13115 1.42458 1.29537 0.86136 0.76923 0.79303 0.82303 1.20628 1.21687 1.20570 1.21340 0.96509 0.86990 0.94978 0.93076 1.22102 0.98350 0.99625 0.98339 1.20521 0.94146 0.98388 1.01911 1.20559 0.98500 0.97425 0.98558 1.21403 0.99041 0.96025 0.98909 1.21861 0.88657 0.99373 0.96837 1.61702 1.01198 1.06108 1.58077 1.22374 0.99651 0.94733 0.94859 0.94690 0.93830 0.95117 0.93508 0.94461 0.93695 0.93656 0.91253 0.91290 0.92501 0.90397 0.92451 0.92285 0.89530 0.91829 0.95942 0.98271 0.89186 0.93296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.04 8.76 71.98 0.63 -4.41 16 2 C -0.10 -4.51 5.20 30.59 0.16 -4.35 16 3 C 0.03 1.54 0.89 -11.54 -0.01 1.53 16 4 H 0.03 1.64 5.84 -2.39 -0.01 1.62 16 5 C -0.48 -25.10 6.06 25.60 0.16 -24.94 16 6 H 0.04 2.00 7.81 -2.91 -0.02 1.98 16 7 C 0.03 1.47 3.50 84.66 0.30 1.77 16 8 N -0.91 -50.22 11.12 21.45 0.24 -49.98 16 9 Si 0.92 43.94 29.54 68.60 2.03 45.97 16 10 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 11 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 12 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 13 C 0.11 4.44 1.36 43.90 0.06 4.50 16 14 H 0.05 2.16 6.58 -2.39 -0.02 2.14 16 15 C -0.15 -4.96 4.95 30.23 0.15 -4.81 16 16 C -0.11 -3.03 5.30 28.85 0.15 -2.87 16 17 C -0.11 -2.69 5.30 28.85 0.15 -2.54 16 18 C -0.12 -3.10 5.63 30.21 0.17 -2.93 16 19 C 0.06 1.92 4.97 85.27 0.42 2.35 16 20 N -0.55 -22.15 4.52 -900.97 -4.07 -26.21 16 21 C 0.03 1.38 8.18 127.69 1.04 2.43 16 22 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 23 H 0.04 2.20 5.98 -2.39 -0.01 2.19 16 24 H 0.03 1.44 8.09 -2.39 -0.02 1.42 16 25 H 0.05 1.82 5.80 -2.39 -0.01 1.80 16 26 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 27 H 0.25 13.73 8.31 -92.71 -0.77 12.96 16 28 H 0.04 1.59 6.62 -2.39 -0.02 1.58 16 29 H 0.07 2.42 5.34 -2.38 -0.01 2.40 16 30 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 31 H 0.06 1.58 7.51 -2.39 -0.02 1.56 16 32 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.06 1.34 7.51 -2.39 -0.02 1.33 16 34 H 0.06 1.79 7.08 -2.39 -0.02 1.78 16 35 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16 36 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 37 H 0.02 0.71 6.48 -2.39 -0.02 0.69 16 38 H 0.00 -0.05 7.70 -2.38 -0.02 -0.07 16 39 H 0.09 4.58 4.17 -2.39 -0.01 4.57 16 40 H 0.05 1.93 8.10 -2.39 -0.02 1.91 16 Total: -1.00 -55.59 284.38 2.57 -53.02 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: 0.99 Total: 11.48 kcal Atomic # 6 Polarization: -37.66 SS G_CDS: 3.39 Total: -34.28 kcal Atomic # 7 Polarization: -72.36 SS G_CDS: -3.83 Total: -76.19 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -55.59 2.57 -53.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260679794.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.281 kcal (2) G-P(sol) polarization free energy of solvation -55.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds