Wall clock time and date at job start Mon Mar 30 2020 02:38:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52993 * 1
3 3 C 1.52995 * 109.47469 * 2 1
4 4 H 1.09001 * 109.47260 * 304.35105 * 3 2 1
5 5 C 1.50699 * 109.46974 * 64.34667 * 3 2 1
6 6 H 1.08002 * 120.00648 * 86.25183 * 5 3 2
7 7 C 1.37888 * 119.99977 * 266.25363 * 5 3 2
8 8 N 1.31514 * 119.99630 * 2.96385 * 7 5 3
9 9 Si 1.86799 * 119.99965 * 182.96735 * 7 5 3
10 10 H 1.48500 * 109.47197 * 59.99937 * 9 7 5
11 11 H 1.48495 * 109.47149 * 179.97438 * 9 7 5
12 12 H 1.48503 * 109.46912 * 299.99562 * 9 7 5
13 13 C 1.52999 * 109.47290 * 184.34302 * 3 2 1
14 14 H 1.08997 * 108.78212 * 301.16047 * 13 3 2
15 15 C 1.50510 * 108.76118 * 59.58828 * 13 3 2
16 16 C 1.54306 * 108.46058 * 214.61427 * 15 13 3
17 17 C 1.45882 * 112.11613 * 281.33668 * 16 15 13
18 18 C 1.54303 * 112.18171 * 61.16717 * 17 16 15
19 19 C 1.50448 * 108.49725 * 281.45748 * 18 17 16
20 20 N 1.48002 * 112.82308 * 93.73636 * 19 18 17
21 21 C 1.46899 * 111.00158 * 191.34486 * 20 19 18
22 22 H 1.09000 * 109.47158 * 182.20284 * 1 2 3
23 23 H 1.08994 * 109.47188 * 302.20673 * 1 2 3
24 24 H 1.09002 * 109.46950 * 62.20623 * 1 2 3
25 25 H 1.09003 * 109.47512 * 239.99666 * 2 1 3
26 26 H 1.09008 * 109.46951 * 120.00266 * 2 1 3
27 27 H 0.96998 * 119.99314 * 179.97438 * 8 7 5
28 28 H 1.08999 * 109.71908 * 94.88511 * 15 13 3
29 29 H 1.09006 * 109.58417 * 334.26577 * 15 13 3
30 30 H 1.09007 * 108.93856 * 160.68287 * 16 15 13
31 31 H 1.08998 * 108.93631 * 41.99183 * 16 15 13
32 32 H 1.09001 * 108.93831 * 181.85971 * 17 16 15
33 33 H 1.08995 * 108.93601 * 300.55862 * 17 16 15
34 34 H 1.08994 * 109.63817 * 41.16777 * 18 17 16
35 35 H 1.09005 * 109.62969 * 161.56551 * 18 17 16
36 36 H 1.09005 * 108.81168 * 214.59231 * 19 18 17
37 37 H 1.09000 * 108.81674 * 332.87355 * 19 18 17
38 38 H 1.09005 * 109.47340 * 68.24425 * 21 20 19
39 39 H 1.08996 * 109.46995 * 188.24528 * 21 20 19
40 40 H 1.08997 * 109.46884 * 308.24174 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 1 1.6145 1.9783 -0.8484
5 6 1.6275 2.1211 1.2808
6 1 2.2453 2.0324 2.1622
7 6 0.4613 2.8552 1.3274
8 7 -0.3205 2.9153 0.2716
9 14 -0.0080 3.7646 2.8901
10 1 1.0503 4.7507 3.2259
11 1 -1.2963 4.4733 2.6825
12 1 -0.1510 2.7931 4.0042
13 6 3.5661 1.4438 -0.1092
14 1 3.9787 0.8880 0.7327
15 6 3.9605 0.7540 -1.3875
16 6 5.2796 -0.0087 -1.1443
17 6 6.4390 0.8763 -1.1722
18 6 6.3722 1.9587 -0.0744
19 6 5.4313 3.0413 -0.5282
20 7 4.0482 2.8414 -0.0408
21 6 3.1152 3.7538 -0.7153
22 1 -0.3633 -1.0269 0.0395
23 1 -0.3633 0.5477 0.8695
24 1 -0.3633 0.4792 -0.9091
25 1 1.8933 -0.5139 -0.8900
26 1 1.8933 -0.5139 0.8900
27 1 -1.1411 3.4314 0.3045
28 1 4.1050 1.4936 -2.1750
29 1 3.1798 0.0516 -1.6796
30 1 5.3963 -0.7690 -1.9166
31 1 5.2312 -0.4978 -0.1714
32 1 7.3413 0.2820 -1.0285
33 1 6.4883 1.3641 -2.1456
34 1 6.0042 1.5183 0.8522
35 1 7.3655 2.3772 0.0881
36 1 5.7973 4.0010 -0.1631
37 1 5.4201 3.0634 -1.6179
38 1 3.0271 3.4728 -1.7648
39 1 2.1369 3.6906 -0.2389
40 1 3.4893 4.7750 -0.6427
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260679794.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:38:35
Heat of formation + Delta-G solvation = -21.739188 kcal
Electronic energy + Delta-G solvation = -17285.765919 eV
Core-core repulsion = 14906.398603 eV
Total energy + Delta-G solvation = -2379.367316 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 225.179 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-40.60620 -36.91072 -34.99282 -33.70148 -32.17292 -29.09139 -28.55185 -25.77996
-25.20692 -23.93574 -21.57519 -21.30034 -19.61649 -18.21625 -16.93419 -16.66421
-16.17753 -15.50364 -15.29804 -14.86256 -14.40666 -14.29186 -14.13664 -13.62499
-13.35571 -13.18792 -12.90244 -12.70439 -12.58891 -12.42438 -12.17374 -12.07313
-11.80289 -11.50794 -11.47674 -11.45083 -11.23964 -10.95699 -10.60595 -10.43455
-10.23575 -8.68445 -7.92708 -5.92911 1.45167 1.47518 1.53214 2.54880
3.23676 3.41536 3.86179 3.97240 4.15885 4.30412 4.45072 4.50970
4.63503 4.68204 4.73322 4.74310 4.80391 4.92782 4.94226 5.01769
5.10005 5.13923 5.23360 5.30681 5.32720 5.35752 5.47126 5.50435
5.56356 5.61573 5.66436 5.71587 5.94230 6.02525 6.09794 6.52507
6.57579 6.81048 7.13921 7.66011 9.13278
Molecular weight = 225.18amu
Principal moments of inertia in cm(-1)
A = 0.030349 B = 0.010235 C = 0.008605
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 922.393318 B = 2735.107838 C = 3253.093593
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.111 4.111
2 C -0.104 4.104
3 C 0.033 3.967
4 H 0.031 0.969
5 C -0.477 4.477
6 H 0.036 0.964
7 C 0.028 3.972
8 N -0.911 5.911
9 Si 0.925 3.075
10 H -0.280 1.280
11 H -0.291 1.291
12 H -0.280 1.280
13 C 0.110 3.890
14 H 0.051 0.949
15 C -0.145 4.145
16 C -0.112 4.112
17 C -0.113 4.113
18 C -0.116 4.116
19 C 0.060 3.940
20 N -0.546 5.546
21 C 0.032 3.968
22 H 0.034 0.966
23 H 0.043 0.957
24 H 0.030 0.970
25 H 0.047 0.953
26 H 0.037 0.963
27 H 0.254 0.746
28 H 0.045 0.955
29 H 0.069 0.931
30 H 0.068 0.932
31 H 0.056 0.944
32 H 0.077 0.923
33 H 0.057 0.943
34 H 0.058 0.942
35 H 0.086 0.914
36 H 0.063 0.937
37 H 0.022 0.978
38 H -0.001 1.001
39 H 0.090 0.910
40 H 0.048 0.952
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.578 -3.530 -3.435 11.669
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.169 4.169
2 C -0.142 4.142
3 C 0.014 3.986
4 H 0.049 0.951
5 C -0.516 4.516
6 H 0.054 0.946
7 C -0.170 4.170
8 N -0.552 5.552
9 Si 0.753 3.247
10 H -0.206 1.206
11 H -0.217 1.217
12 H -0.206 1.206
13 C 0.002 3.998
14 H 0.069 0.931
15 C -0.184 4.184
16 C -0.150 4.150
17 C -0.150 4.150
18 C -0.154 4.154
19 C -0.067 4.067
20 N -0.271 5.271
21 C -0.116 4.116
22 H 0.053 0.947
23 H 0.062 0.938
24 H 0.049 0.951
25 H 0.065 0.935
26 H 0.055 0.945
27 H 0.063 0.937
28 H 0.063 0.937
29 H 0.087 0.913
30 H 0.087 0.913
31 H 0.075 0.925
32 H 0.096 0.904
33 H 0.075 0.925
34 H 0.077 0.923
35 H 0.105 0.895
36 H 0.082 0.918
37 H 0.041 0.959
38 H 0.017 0.983
39 H 0.108 0.892
40 H 0.067 0.933
Dipole moment (debyes) X Y Z Total
from point charges 10.433 -3.324 -3.017 11.358
hybrid contribution -0.774 0.634 0.036 1.002
sum 9.659 -2.690 -2.981 10.460
Atomic orbital electron populations
1.21377 0.96577 0.97581 1.01350 1.21646 0.95738 0.98407 0.98423
1.19161 0.90098 0.92619 0.96734 0.95104 1.20992 1.04758 1.29118
0.96707 0.94554 1.25278 0.96820 0.97454 0.97466 1.70064 1.13115
1.42458 1.29537 0.86136 0.76923 0.79303 0.82303 1.20628 1.21687
1.20570 1.21340 0.96509 0.86990 0.94978 0.93076 1.22102 0.98350
0.99625 0.98339 1.20521 0.94146 0.98388 1.01911 1.20559 0.98500
0.97425 0.98558 1.21403 0.99041 0.96025 0.98909 1.21861 0.88657
0.99373 0.96837 1.61702 1.01198 1.06108 1.58077 1.22374 0.99651
0.94733 0.94859 0.94690 0.93830 0.95117 0.93508 0.94461 0.93695
0.93656 0.91253 0.91290 0.92501 0.90397 0.92451 0.92285 0.89530
0.91829 0.95942 0.98271 0.89186 0.93296
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -5.04 8.76 71.98 0.63 -4.41 16
2 C -0.10 -4.51 5.20 30.59 0.16 -4.35 16
3 C 0.03 1.54 0.89 -11.54 -0.01 1.53 16
4 H 0.03 1.64 5.84 -2.39 -0.01 1.62 16
5 C -0.48 -25.10 6.06 25.60 0.16 -24.94 16
6 H 0.04 2.00 7.81 -2.91 -0.02 1.98 16
7 C 0.03 1.47 3.50 84.66 0.30 1.77 16
8 N -0.91 -50.22 11.12 21.45 0.24 -49.98 16
9 Si 0.92 43.94 29.54 68.60 2.03 45.97 16
10 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16
11 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16
12 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16
13 C 0.11 4.44 1.36 43.90 0.06 4.50 16
14 H 0.05 2.16 6.58 -2.39 -0.02 2.14 16
15 C -0.15 -4.96 4.95 30.23 0.15 -4.81 16
16 C -0.11 -3.03 5.30 28.85 0.15 -2.87 16
17 C -0.11 -2.69 5.30 28.85 0.15 -2.54 16
18 C -0.12 -3.10 5.63 30.21 0.17 -2.93 16
19 C 0.06 1.92 4.97 85.27 0.42 2.35 16
20 N -0.55 -22.15 4.52 -900.97 -4.07 -26.21 16
21 C 0.03 1.38 8.18 127.69 1.04 2.43 16
22 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16
23 H 0.04 2.20 5.98 -2.39 -0.01 2.19 16
24 H 0.03 1.44 8.09 -2.39 -0.02 1.42 16
25 H 0.05 1.82 5.80 -2.39 -0.01 1.80 16
26 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16
27 H 0.25 13.73 8.31 -92.71 -0.77 12.96 16
28 H 0.04 1.59 6.62 -2.39 -0.02 1.58 16
29 H 0.07 2.42 5.34 -2.38 -0.01 2.40 16
30 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16
31 H 0.06 1.58 7.51 -2.39 -0.02 1.56 16
32 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16
33 H 0.06 1.34 7.51 -2.39 -0.02 1.33 16
34 H 0.06 1.79 7.08 -2.39 -0.02 1.78 16
35 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16
36 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16
37 H 0.02 0.71 6.48 -2.39 -0.02 0.69 16
38 H 0.00 -0.05 7.70 -2.38 -0.02 -0.07 16
39 H 0.09 4.58 4.17 -2.39 -0.01 4.57 16
40 H 0.05 1.93 8.10 -2.39 -0.02 1.91 16
Total: -1.00 -55.59 284.38 2.57 -53.02
By element:
Atomic # 1 Polarization: 10.50 SS G_CDS: 0.99 Total: 11.48 kcal
Atomic # 6 Polarization: -37.66 SS G_CDS: 3.39 Total: -34.28 kcal
Atomic # 7 Polarization: -72.36 SS G_CDS: -3.83 Total: -76.19 kcal
Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal
Total: -55.59 2.57 -53.02 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260679794.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 31.281 kcal
(2) G-P(sol) polarization free energy of solvation -55.591 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.310 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.571 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.020 kcal
(6) G-S(sol) free energy of system = (1) + (5) -21.739 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds