Wall clock time and date at job start Mon Mar 30 2020 02:38:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 C 1.52992 * 109.46797 * 2 1
4 4 H 1.08996 * 109.47876 * 304.08878 * 3 2 1
5 5 C 1.50706 * 109.47174 * 184.08678 * 3 2 1
6 6 H 1.07996 * 120.00365 * 239.99941 * 5 3 2
7 7 C 1.37881 * 119.99440 * 59.99919 * 5 3 2
8 8 N 1.31512 * 120.00323 * 0.02562 * 7 5 3
9 9 Si 1.86801 * 119.99608 * 179.97438 * 7 5 3
10 10 H 1.48495 * 109.47342 * 0.02562 * 9 7 5
11 11 H 1.48501 * 109.46802 * 120.00535 * 9 7 5
12 12 H 1.48498 * 109.47238 * 240.00189 * 9 7 5
13 13 C 1.52999 * 109.47281 * 64.09076 * 3 2 1
14 14 H 1.09001 * 108.66683 * 302.19635 * 13 3 2
15 15 C 1.45864 * 108.79278 * 60.49905 * 13 3 2
16 16 C 1.54507 * 111.59077 * 182.21615 * 15 13 3
17 17 C 1.50466 * 108.85571 * 282.80671 * 16 15 13
18 18 C 1.54290 * 113.03315 * 92.15240 * 17 16 15
19 19 C 1.54064 * 112.28774 * 318.30564 * 18 17 16
20 20 N 1.44275 * 111.98580 * 318.91437 * 19 18 17
21 21 C 1.46897 * 111.00018 * 219.30929 * 20 19 18
22 22 H 1.09001 * 109.46956 * 54.42403 * 1 2 3
23 23 H 1.09005 * 109.46755 * 174.41783 * 1 2 3
24 24 H 1.09000 * 109.46939 * 294.41638 * 1 2 3
25 25 H 1.09003 * 109.46940 * 240.00320 * 2 1 3
26 26 H 1.08999 * 109.47075 * 120.00102 * 2 1 3
27 27 H 0.96993 * 119.99843 * 180.02562 * 8 7 5
28 28 H 1.09000 * 109.05994 * 302.75900 * 15 13 3
29 29 H 1.09003 * 109.05699 * 61.74658 * 15 13 3
30 30 H 1.09001 * 109.57449 * 42.62182 * 16 15 13
31 31 H 1.09010 * 109.57318 * 162.86914 * 16 15 13
32 32 H 1.08997 * 108.77189 * 213.07123 * 17 16 15
33 33 H 1.09001 * 108.76749 * 331.23898 * 17 16 15
34 34 H 1.09007 * 108.91693 * 79.02877 * 18 17 16
35 35 H 1.09000 * 108.91806 * 197.67299 * 18 17 16
36 36 H 1.09002 * 108.98188 * 198.27073 * 19 18 17
37 37 H 1.09004 * 108.98353 * 79.56002 * 19 18 17
38 38 H 1.08999 * 109.47525 * 291.07998 * 21 20 19
39 39 H 1.09006 * 109.47384 * 51.07863 * 21 20 19
40 40 H 1.09003 * 109.47362 * 171.07860 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 1 1.6181 1.9771 -0.8510
5 6 3.5436 1.4438 -0.1013
6 1 4.1372 1.8925 0.6814
7 6 4.1614 0.8720 -1.1933
8 7 3.4386 0.3260 -2.1467
9 14 6.0252 0.8742 -1.3192
10 1 6.6011 1.5456 -0.1264
11 1 6.5184 -0.5249 -1.3856
12 1 6.4376 1.6032 -2.5454
13 6 1.6157 2.1334 1.2975
14 1 0.5294 2.0905 1.3765
15 6 2.1976 1.4139 2.4250
16 6 1.7640 2.0268 3.7754
17 6 2.5587 3.2812 4.0176
18 6 1.8553 4.5516 3.4962
19 6 1.1986 4.3327 2.1198
20 7 2.0335 3.5500 1.2413
21 6 1.9755 4.0618 -0.1344
22 1 -0.3633 0.5979 -0.8359
23 1 -0.3633 -1.0229 -0.1000
24 1 -0.3633 0.4248 0.9358
25 1 1.8934 -0.5138 -0.8900
26 1 1.8934 -0.5138 0.8900
27 1 3.8733 -0.0765 -2.9147
28 1 1.8762 0.3730 2.3871
29 1 3.2843 1.4536 2.3500
30 1 0.7015 2.2682 3.7425
31 1 1.9515 1.3128 4.5775
32 1 2.7271 3.3884 5.0892
33 1 3.5243 3.1860 3.5210
34 1 1.0877 4.8492 4.2107
35 1 2.5894 5.3530 3.4125
36 1 1.0099 5.3022 1.6587
37 1 0.2484 3.8169 2.2584
38 1 0.9867 3.8712 -0.5516
39 1 2.1679 5.1347 -0.1314
40 1 2.7288 3.5593 -0.7412
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260679801.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:38:41
Heat of formation + Delta-G solvation = -7.606714 kcal
Electronic energy + Delta-G solvation = -17313.034477 eV
Core-core repulsion = 14934.279992 eV
Total energy + Delta-G solvation = -2378.754486 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 225.179 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-39.18014 -35.04068 -33.69000 -31.90548 -30.62980 -27.29344 -27.08091 -24.15085
-23.44184 -22.50164 -20.71639 -19.04021 -18.35858 -16.10533 -15.38709 -14.84155
-14.49501 -13.99650 -13.90819 -13.14148 -12.95550 -12.71058 -12.39974 -12.16358
-11.72457 -11.60102 -11.46481 -11.12973 -10.83263 -10.61334 -10.54704 -10.40785
-10.24351 -10.07593 -10.02612 -9.83439 -9.47180 -9.24527 -8.78107 -8.64000
-8.19289 -7.34509 -5.88915 -3.91303 3.35161 3.44058 3.49387 4.52416
4.74915 5.31993 5.37671 5.41160 5.49484 5.74840 5.88675 5.95289
6.06028 6.12975 6.15490 6.24983 6.26130 6.28708 6.37804 6.42307
6.55402 6.57976 6.60685 6.78472 6.82472 6.89346 6.94377 7.08769
7.15449 7.27499 7.37482 7.45975 7.85378 7.93772 8.05225 8.12932
8.32100 8.59598 9.13866 9.71152 11.16623
Molecular weight = 225.18amu
Principal moments of inertia in cm(-1)
A = 0.024973 B = 0.010726 C = 0.009473
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1120.932634 B = 2609.775938 C = 2955.030818
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C -0.122 4.122
3 C 0.042 3.958
4 H 0.031 0.969
5 C -0.486 4.486
6 H 0.065 0.935
7 C 0.056 3.944
8 N -0.895 5.895
9 Si 0.884 3.116
10 H -0.273 1.273
11 H -0.288 1.288
12 H -0.288 1.288
13 C 0.097 3.903
14 H 0.015 0.985
15 C -0.104 4.104
16 C -0.119 4.119
17 C -0.106 4.106
18 C -0.105 4.105
19 C 0.053 3.947
20 N -0.516 5.516
21 C 0.030 3.970
22 H 0.041 0.959
23 H 0.031 0.969
24 H 0.034 0.966
25 H 0.093 0.907
26 H 0.037 0.963
27 H 0.256 0.744
28 H 0.061 0.939
29 H 0.080 0.920
30 H 0.048 0.952
31 H 0.049 0.951
32 H 0.040 0.960
33 H 0.069 0.931
34 H 0.047 0.953
35 H 0.055 0.945
36 H 0.051 0.949
37 H 0.028 0.972
38 H 0.011 0.989
39 H 0.041 0.959
40 H 0.102 0.898
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.237 4.482 7.722 9.883
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.205 4.205
2 C -0.160 4.160
3 C 0.023 3.977
4 H 0.049 0.951
5 C -0.524 4.524
6 H 0.083 0.917
7 C -0.144 4.144
8 N -0.535 5.535
9 Si 0.713 3.287
10 H -0.198 1.198
11 H -0.215 1.215
12 H -0.214 1.214
13 C -0.010 4.010
14 H 0.033 0.967
15 C -0.142 4.142
16 C -0.157 4.157
17 C -0.144 4.144
18 C -0.143 4.143
19 C -0.076 4.076
20 N -0.239 5.239
21 C -0.118 4.118
22 H 0.060 0.940
23 H 0.051 0.949
24 H 0.053 0.947
25 H 0.112 0.888
26 H 0.056 0.944
27 H 0.066 0.934
28 H 0.080 0.920
29 H 0.098 0.902
30 H 0.067 0.933
31 H 0.068 0.932
32 H 0.059 0.941
33 H 0.088 0.912
34 H 0.066 0.934
35 H 0.073 0.927
36 H 0.069 0.931
37 H 0.047 0.953
38 H 0.029 0.971
39 H 0.060 0.940
40 H 0.120 0.880
Dipole moment (debyes) X Y Z Total
from point charges -3.712 4.442 7.710 9.641
hybrid contribution 0.082 -0.070 -0.433 0.447
sum -3.630 4.371 7.277 9.232
Atomic orbital electron populations
1.21884 0.99859 0.99132 0.99632 1.21720 0.91107 1.00657 1.02539
1.19086 0.96222 0.91553 0.90794 0.95145 1.21236 0.91086 1.35038
1.05037 0.91684 1.24976 0.97486 0.95854 0.96073 1.69891 1.34432
1.39359 1.09812 0.86650 0.86801 0.77385 0.77854 1.19765 1.21463
1.21415 1.20602 0.94637 0.87177 0.98562 0.96676 1.20685 1.03039
0.98367 0.92080 1.21415 0.99225 0.96669 0.98351 1.21159 1.00507
0.94212 0.98493 1.21896 0.98992 0.97757 0.95667 1.21920 0.94346
0.97221 0.94147 1.61488 1.52469 1.02598 1.07357 1.22539 1.00816
0.98074 0.90362 0.94032 0.94938 0.94664 0.88834 0.94425 0.93404
0.92045 0.90171 0.93289 0.93185 0.94138 0.91249 0.93387 0.92658
0.93094 0.95330 0.97092 0.93974 0.87963
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.92 9.49 37.16 0.35 -2.57 16
2 C -0.12 -2.81 4.96 -26.73 -0.13 -2.94 16
3 C 0.04 0.99 1.05 -91.77 -0.10 0.89 16
4 H 0.03 0.79 6.06 -51.93 -0.31 0.48 16
5 C -0.49 -12.55 5.97 -34.44 -0.21 -12.75 16
6 H 0.07 1.73 6.57 -52.49 -0.35 1.39 16
7 C 0.06 1.50 5.29 -17.82 -0.09 1.40 16
8 N -0.89 -24.95 11.30 55.43 0.63 -24.33 16
9 Si 0.88 21.20 29.54 -169.99 -5.02 16.17 16
10 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16
11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16
12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16
13 C 0.10 1.98 1.22 -70.59 -0.09 1.89 16
14 H 0.02 0.32 5.60 -51.93 -0.29 0.02 16
15 C -0.10 -2.01 4.33 -29.32 -0.13 -2.13 16
16 C -0.12 -1.91 5.60 -27.21 -0.15 -2.07 16
17 C -0.11 -1.64 5.42 -27.32 -0.15 -1.79 16
18 C -0.10 -1.54 6.14 -25.50 -0.16 -1.70 16
19 C 0.05 0.88 5.17 -4.67 -0.02 0.85 16
20 N -0.52 -10.04 4.19 -239.73 -1.01 -11.04 16
21 C 0.03 0.59 8.00 60.06 0.48 1.07 16
22 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16
23 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16
24 H 0.03 0.64 6.76 -51.93 -0.35 0.29 16
25 H 0.09 2.45 5.97 -51.93 -0.31 2.14 16
26 H 0.04 0.85 6.12 -51.93 -0.32 0.53 16
27 H 0.26 6.91 8.31 -40.82 -0.34 6.58 16
28 H 0.06 1.19 5.96 -51.93 -0.31 0.89 16
29 H 0.08 1.71 5.82 -51.93 -0.30 1.41 16
30 H 0.05 0.77 7.15 -51.93 -0.37 0.40 16
31 H 0.05 0.73 8.14 -51.92 -0.42 0.31 16
32 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16
33 H 0.07 1.21 7.38 -51.93 -0.38 0.83 16
34 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16
35 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16
36 H 0.05 0.78 7.37 -51.93 -0.38 0.40 16
37 H 0.03 0.48 6.51 -51.93 -0.34 0.14 16
38 H 0.01 0.21 7.66 -51.93 -0.40 -0.19 16
39 H 0.04 0.73 7.80 -51.93 -0.41 0.32 16
40 H 0.10 2.33 5.66 -51.93 -0.29 2.04 16
LS Contribution 284.56 15.07 4.29 4.29
Total: -1.00 -26.45 284.56 -8.29 -34.73
By element:
Atomic # 1 Polarization: 6.79 SS G_CDS: -6.78 Total: 0.01 kcal
Atomic # 6 Polarization: -19.45 SS G_CDS: -0.39 Total: -19.84 kcal
Atomic # 7 Polarization: -34.99 SS G_CDS: -0.38 Total: -35.37 kcal
Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.17 kcal
Total LS contribution 4.29 Total: 4.29 kcal
Total: -26.45 -8.29 -34.73 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260679801.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 27.127 kcal
(2) G-P(sol) polarization free energy of solvation -26.447 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.680 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.286 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.733 kcal
(6) G-S(sol) free energy of system = (1) + (5) -7.607 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds