Wall clock time and date at job start Mon Mar 30 2020 02:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52992 * 109.46797 * 2 1 4 4 H 1.08996 * 109.47876 * 304.08878 * 3 2 1 5 5 C 1.50706 * 109.47174 * 184.08678 * 3 2 1 6 6 H 1.07996 * 120.00365 * 239.99941 * 5 3 2 7 7 C 1.37881 * 119.99440 * 59.99919 * 5 3 2 8 8 N 1.31512 * 120.00323 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99608 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47342 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46802 * 120.00535 * 9 7 5 12 12 H 1.48498 * 109.47238 * 240.00189 * 9 7 5 13 13 C 1.52999 * 109.47281 * 64.09076 * 3 2 1 14 14 H 1.09001 * 108.66683 * 302.19635 * 13 3 2 15 15 C 1.45864 * 108.79278 * 60.49905 * 13 3 2 16 16 C 1.54507 * 111.59077 * 182.21615 * 15 13 3 17 17 C 1.50466 * 108.85571 * 282.80671 * 16 15 13 18 18 C 1.54290 * 113.03315 * 92.15240 * 17 16 15 19 19 C 1.54064 * 112.28774 * 318.30564 * 18 17 16 20 20 N 1.44275 * 111.98580 * 318.91437 * 19 18 17 21 21 C 1.46897 * 111.00018 * 219.30929 * 20 19 18 22 22 H 1.09001 * 109.46956 * 54.42403 * 1 2 3 23 23 H 1.09005 * 109.46755 * 174.41783 * 1 2 3 24 24 H 1.09000 * 109.46939 * 294.41638 * 1 2 3 25 25 H 1.09003 * 109.46940 * 240.00320 * 2 1 3 26 26 H 1.08999 * 109.47075 * 120.00102 * 2 1 3 27 27 H 0.96993 * 119.99843 * 180.02562 * 8 7 5 28 28 H 1.09000 * 109.05994 * 302.75900 * 15 13 3 29 29 H 1.09003 * 109.05699 * 61.74658 * 15 13 3 30 30 H 1.09001 * 109.57449 * 42.62182 * 16 15 13 31 31 H 1.09010 * 109.57318 * 162.86914 * 16 15 13 32 32 H 1.08997 * 108.77189 * 213.07123 * 17 16 15 33 33 H 1.09001 * 108.76749 * 331.23898 * 17 16 15 34 34 H 1.09007 * 108.91693 * 79.02877 * 18 17 16 35 35 H 1.09000 * 108.91806 * 197.67299 * 18 17 16 36 36 H 1.09002 * 108.98188 * 198.27073 * 19 18 17 37 37 H 1.09004 * 108.98353 * 79.56002 * 19 18 17 38 38 H 1.08999 * 109.47525 * 291.07998 * 21 20 19 39 39 H 1.09006 * 109.47384 * 51.07863 * 21 20 19 40 40 H 1.09003 * 109.47362 * 171.07860 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6181 1.9771 -0.8510 5 6 3.5436 1.4438 -0.1013 6 1 4.1372 1.8925 0.6814 7 6 4.1614 0.8720 -1.1933 8 7 3.4386 0.3260 -2.1467 9 14 6.0252 0.8742 -1.3192 10 1 6.6011 1.5456 -0.1264 11 1 6.5184 -0.5249 -1.3856 12 1 6.4376 1.6032 -2.5454 13 6 1.6157 2.1334 1.2975 14 1 0.5294 2.0905 1.3765 15 6 2.1976 1.4139 2.4250 16 6 1.7640 2.0268 3.7754 17 6 2.5587 3.2812 4.0176 18 6 1.8553 4.5516 3.4962 19 6 1.1986 4.3327 2.1198 20 7 2.0335 3.5500 1.2413 21 6 1.9755 4.0618 -0.1344 22 1 -0.3633 0.5979 -0.8359 23 1 -0.3633 -1.0229 -0.1000 24 1 -0.3633 0.4248 0.9358 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 3.8733 -0.0765 -2.9147 28 1 1.8762 0.3730 2.3871 29 1 3.2843 1.4536 2.3500 30 1 0.7015 2.2682 3.7425 31 1 1.9515 1.3128 4.5775 32 1 2.7271 3.3884 5.0892 33 1 3.5243 3.1860 3.5210 34 1 1.0877 4.8492 4.2107 35 1 2.5894 5.3530 3.4125 36 1 1.0099 5.3022 1.6587 37 1 0.2484 3.8169 2.2584 38 1 0.9867 3.8712 -0.5516 39 1 2.1679 5.1347 -0.1314 40 1 2.7288 3.5593 -0.7412 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260679801.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:41 Heat of formation + Delta-G solvation = -7.606714 kcal Electronic energy + Delta-G solvation = -17313.034477 eV Core-core repulsion = 14934.279992 eV Total energy + Delta-G solvation = -2378.754486 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.18014 -35.04068 -33.69000 -31.90548 -30.62980 -27.29344 -27.08091 -24.15085 -23.44184 -22.50164 -20.71639 -19.04021 -18.35858 -16.10533 -15.38709 -14.84155 -14.49501 -13.99650 -13.90819 -13.14148 -12.95550 -12.71058 -12.39974 -12.16358 -11.72457 -11.60102 -11.46481 -11.12973 -10.83263 -10.61334 -10.54704 -10.40785 -10.24351 -10.07593 -10.02612 -9.83439 -9.47180 -9.24527 -8.78107 -8.64000 -8.19289 -7.34509 -5.88915 -3.91303 3.35161 3.44058 3.49387 4.52416 4.74915 5.31993 5.37671 5.41160 5.49484 5.74840 5.88675 5.95289 6.06028 6.12975 6.15490 6.24983 6.26130 6.28708 6.37804 6.42307 6.55402 6.57976 6.60685 6.78472 6.82472 6.89346 6.94377 7.08769 7.15449 7.27499 7.37482 7.45975 7.85378 7.93772 8.05225 8.12932 8.32100 8.59598 9.13866 9.71152 11.16623 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.024973 B = 0.010726 C = 0.009473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.932634 B = 2609.775938 C = 2955.030818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C 0.042 3.958 4 H 0.031 0.969 5 C -0.486 4.486 6 H 0.065 0.935 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.884 3.116 10 H -0.273 1.273 11 H -0.288 1.288 12 H -0.288 1.288 13 C 0.097 3.903 14 H 0.015 0.985 15 C -0.104 4.104 16 C -0.119 4.119 17 C -0.106 4.106 18 C -0.105 4.105 19 C 0.053 3.947 20 N -0.516 5.516 21 C 0.030 3.970 22 H 0.041 0.959 23 H 0.031 0.969 24 H 0.034 0.966 25 H 0.093 0.907 26 H 0.037 0.963 27 H 0.256 0.744 28 H 0.061 0.939 29 H 0.080 0.920 30 H 0.048 0.952 31 H 0.049 0.951 32 H 0.040 0.960 33 H 0.069 0.931 34 H 0.047 0.953 35 H 0.055 0.945 36 H 0.051 0.949 37 H 0.028 0.972 38 H 0.011 0.989 39 H 0.041 0.959 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.237 4.482 7.722 9.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.160 4.160 3 C 0.023 3.977 4 H 0.049 0.951 5 C -0.524 4.524 6 H 0.083 0.917 7 C -0.144 4.144 8 N -0.535 5.535 9 Si 0.713 3.287 10 H -0.198 1.198 11 H -0.215 1.215 12 H -0.214 1.214 13 C -0.010 4.010 14 H 0.033 0.967 15 C -0.142 4.142 16 C -0.157 4.157 17 C -0.144 4.144 18 C -0.143 4.143 19 C -0.076 4.076 20 N -0.239 5.239 21 C -0.118 4.118 22 H 0.060 0.940 23 H 0.051 0.949 24 H 0.053 0.947 25 H 0.112 0.888 26 H 0.056 0.944 27 H 0.066 0.934 28 H 0.080 0.920 29 H 0.098 0.902 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.088 0.912 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.047 0.953 38 H 0.029 0.971 39 H 0.060 0.940 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.712 4.442 7.710 9.641 hybrid contribution 0.082 -0.070 -0.433 0.447 sum -3.630 4.371 7.277 9.232 Atomic orbital electron populations 1.21884 0.99859 0.99132 0.99632 1.21720 0.91107 1.00657 1.02539 1.19086 0.96222 0.91553 0.90794 0.95145 1.21236 0.91086 1.35038 1.05037 0.91684 1.24976 0.97486 0.95854 0.96073 1.69891 1.34432 1.39359 1.09812 0.86650 0.86801 0.77385 0.77854 1.19765 1.21463 1.21415 1.20602 0.94637 0.87177 0.98562 0.96676 1.20685 1.03039 0.98367 0.92080 1.21415 0.99225 0.96669 0.98351 1.21159 1.00507 0.94212 0.98493 1.21896 0.98992 0.97757 0.95667 1.21920 0.94346 0.97221 0.94147 1.61488 1.52469 1.02598 1.07357 1.22539 1.00816 0.98074 0.90362 0.94032 0.94938 0.94664 0.88834 0.94425 0.93404 0.92045 0.90171 0.93289 0.93185 0.94138 0.91249 0.93387 0.92658 0.93094 0.95330 0.97092 0.93974 0.87963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 9.49 37.16 0.35 -2.57 16 2 C -0.12 -2.81 4.96 -26.73 -0.13 -2.94 16 3 C 0.04 0.99 1.05 -91.77 -0.10 0.89 16 4 H 0.03 0.79 6.06 -51.93 -0.31 0.48 16 5 C -0.49 -12.55 5.97 -34.44 -0.21 -12.75 16 6 H 0.07 1.73 6.57 -52.49 -0.35 1.39 16 7 C 0.06 1.50 5.29 -17.82 -0.09 1.40 16 8 N -0.89 -24.95 11.30 55.43 0.63 -24.33 16 9 Si 0.88 21.20 29.54 -169.99 -5.02 16.17 16 10 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 C 0.10 1.98 1.22 -70.59 -0.09 1.89 16 14 H 0.02 0.32 5.60 -51.93 -0.29 0.02 16 15 C -0.10 -2.01 4.33 -29.32 -0.13 -2.13 16 16 C -0.12 -1.91 5.60 -27.21 -0.15 -2.07 16 17 C -0.11 -1.64 5.42 -27.32 -0.15 -1.79 16 18 C -0.10 -1.54 6.14 -25.50 -0.16 -1.70 16 19 C 0.05 0.88 5.17 -4.67 -0.02 0.85 16 20 N -0.52 -10.04 4.19 -239.73 -1.01 -11.04 16 21 C 0.03 0.59 8.00 60.06 0.48 1.07 16 22 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 23 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.03 0.64 6.76 -51.93 -0.35 0.29 16 25 H 0.09 2.45 5.97 -51.93 -0.31 2.14 16 26 H 0.04 0.85 6.12 -51.93 -0.32 0.53 16 27 H 0.26 6.91 8.31 -40.82 -0.34 6.58 16 28 H 0.06 1.19 5.96 -51.93 -0.31 0.89 16 29 H 0.08 1.71 5.82 -51.93 -0.30 1.41 16 30 H 0.05 0.77 7.15 -51.93 -0.37 0.40 16 31 H 0.05 0.73 8.14 -51.92 -0.42 0.31 16 32 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 1.21 7.38 -51.93 -0.38 0.83 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.05 0.78 7.37 -51.93 -0.38 0.40 16 37 H 0.03 0.48 6.51 -51.93 -0.34 0.14 16 38 H 0.01 0.21 7.66 -51.93 -0.40 -0.19 16 39 H 0.04 0.73 7.80 -51.93 -0.41 0.32 16 40 H 0.10 2.33 5.66 -51.93 -0.29 2.04 16 LS Contribution 284.56 15.07 4.29 4.29 Total: -1.00 -26.45 284.56 -8.29 -34.73 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -6.78 Total: 0.01 kcal Atomic # 6 Polarization: -19.45 SS G_CDS: -0.39 Total: -19.84 kcal Atomic # 7 Polarization: -34.99 SS G_CDS: -0.38 Total: -35.37 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -26.45 -8.29 -34.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260679801.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.127 kcal (2) G-P(sol) polarization free energy of solvation -26.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds